Pregenerated sensors for KRTAP4-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063251

Ensembl transcript IDs: ENSMUST00000081007.7

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	ATAGACCCAGCCCCTCAGGTCTGGGGTTGTAAAGTCAATGCTAAGACAAAGGCTTTTGGAGAACTAGGATaGATTCTTAGCTCACAACTT	+
Preference number: 2 (lower is better) Translates to: IDPAPQVWGCKVNAKTKAFGELG*ILSSQL Trigger: AAGTTGTGAGCTAAGAATTCATCCTAGTTCTCCAAA...AGCCTTTGTCTTAGCATTGACTTTACAACCCCAGACCTGAGGGGCTGGGTCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000081007.7
3UTR-3UTR CCA 90 bp	GCCCCTCAGGTCTGGGGTTGTAAAGTCAATGCTAAGACAAAGGCTGTAGAAAGTGTTCACATGCAAGAATaGTACATATCTGTACGTGGA	+
Preference number: 2 (lower is better) Translates to: APQVWGCKVNAKTKAVESVHMQE*YISVRG Trigger: TCCACGTACAGATATGTACCATTCTTGCATGTGAAC...ACTTTCTACAGCCTTTGTCTTAGCATTGACTTTACAACCCCAGACCTGAGGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081007.7
3UTR-3UTR CCA 90 bp	ACTGGGAAGAATAATTTAGAGCTACAAAGTCAATCCATTTGGAGAACTAGGATGTTCTGCGGAAGATGGTaGCTCACAAGAATTGTGTGG	+
Preference number: 2 (lower is better) Translates to: TGKNNLELQSQSIWRTRMFCGRW*LTRIVW Trigger: CCACACAATTCTTGTGAGCCACCATCTTCCGCAGAA...CATCCTAGTTCTCCAAATGGATTGACTTTGTAGCTCTAAATTATTCTTCCCAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081007.7
3UTR GCA 72 bp	ATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATaGAAGAATGGTACATATCTGTACGTGGAGATGTGC	+
Preference number: 3 (lower is better) Translates to: MPNRFHVSYGFT*KNGTYLYVEMC Trigger: GCACATCTCCACGTACAGATATGTACCATTCTTGCATGTGAACCCGTAGGACACGTGGAATCTGTTTGGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081007.7
CDS-3UTR GCA 90 bp	GCCCCTCAGGTCTGGGGTTGTAAAGTCAATGCTAAGACAAAGGCTGTAGAAAGTGGCGGCAGCAGGGGCTaGAGCAAGGGCTGCAGCAGG	+
Preference number: 4 (lower is better) Translates to: APQVWGCKVNAKTKAVESGGSRG*SKGCSR Trigger: CCTGCTGCAGCCCTTGCTGCAGCCCCTGCTGCCGCC...ACTTTCTACAGCCTTTGTCTTAGCATTGACTTTACAACCCCAGACCTGAGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000081007.7
CDS-3UTR CCA 90 bp	CCAGCCCCTCAGGTCTGGGGTTGTAAAGTCAATGCTAAGACAAAGGCTGTAGAAAGCAGCAGCAGGGTGTaGCACAGCACATGGGGCGGG	+
Preference number: 4 (lower is better) Translates to: PAPQVWGCKVNAKTKAVESSSRV*HSTWGG Trigger: CCCGCCCCATGTGCTGTGCCACACCCTGCTGCTGCT...TTCTACAGCCTTTGTCTTAGCATTGACTTTACAACCCCAGACCTGAGGGGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000081007.7
CDS-3UTR GCA 90 bp	GAGATTAATTTCAGCACAGTGCAAACATTAGAAAGACATGGTAGCAAACAAGAGGGCTGCAGCAAGGGCTaGAGCAGGGGCGGCAGCAGG	+
Preference number: 4 (lower is better) Translates to: EINFSTVQTLERHGSKQEGCSKG*SRGGSR Trigger: CCTGCTGCCGCCCCTGCTGCAGCCCTTGCTGCAGCC...CTCTTGTTTGCTACCATGTCTTTCTAATGTTTGCACTGTGCTGAAATTAATCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081007.7
CDS-3UTR CAA 90 bp	CCTCAGGTCTGGGGTTGTAAAGTCAATGCTAAGACAAAGGCTGTAGAAAGTGTCGCGGTAGCAAGTGGTTaGGCAGCAGACCTGACCACA	+
Preference number: 5 (lower is better) Translates to: PQVWGCKVNAKTKAVESVAVASG*AADLTT Trigger: TGTGGTCAGGTCTGCTGCCAAACCACTTGCTACCGC...GACACTTTCTACAGCCTTTGTCTTAGCATTGACTTTACAACCCCAGACCTGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081007.7

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