Pregenerated sensors for KRTAP3-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069722

Ensembl transcript IDs: ENSMUST00000092700.5

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CGGTCGGTAAATGTTGCATTACCAAAGACTCTGGTTTCTTTTTGTTaGGGTGGGAGAGGCCATTGTCATGACAATATCACTCAACTCCAA	+
Preference number: 1 (lower is better) Translates to: RSVNVALPKTLVSFC*GGRGHCHDNITQLQ Trigger: TTGGAGTTGAGTGATATTGTCATGACAATGGCCTCTCCCACCTCAACAAAAAGAAACCAGAGTCTTTGGTAATGCAACATTTACCGACCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092700.5
3UTR-3UTR GCA 90 bp	AGCATCAATAGTCCGAACTGCACACGGTCGGTAAATGTTGCATTACCAAAGACTGCTAATTGCAGGTTCTaGCAGGTAAGCCTAGAGCTC	+
Preference number: 2 (lower is better) Translates to: SINSPNCTRSVNVALPKTANCRF*QVSLEL Trigger: GAGCTCTAGGCTTACCTGGCAGAACCTGCAATTAGC...AGTCTTTGGTAATGCAACATTTACCGACCGTGTGCAGTTCGGACTATTGATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092700.5
3UTR-3UTR TCA 90 bp	AGTCCGAACTGCACACGGTCGGTAAATGTTGCATTACCAAAGACTCTGGTTTCTGAGAGGCCATTGTCATaGCAATATCACTCAACTCCA	+
Preference number: 2 (lower is better) Translates to: SPNCTRSVNVALPKTLVSERPLS*QYHSTP Trigger: TGGAGTTGAGTGATATTGTCATGACAATGGCCTCTC...AGAAACCAGAGTCTTTGGTAATGCAACATTTACCGACCGTGTGCAGTTCGGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092700.5
3UTR-3UTR TCA 90 bp	TGCTATGGCACAGACACAAAATTTATTAGGAAGATCATGAGAAAATTCCTCGATCTGGTTTCTTTTTGTTaGGGTGGGAGAGGCCATTGT	+
Preference number: 2 (lower is better) Translates to: CYGTDTKFIRKIMRKFLDLVSFC*GGRGHC Trigger: ACAATGGCCTCTCCCACCTCAACAAAAAGAAACCAG...ATCGAGGAATTTTCTCATGATCTTCCTAATAAATTTTGTGTCTGTGCCATAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000092700.5
3UTR TCA 72 bp	GGTTTCTTTTTGTTGAGGTGGGAGAGGCCATTGTCATaGCAATATCACTCAACTCCAACTTCTAAATCAGAA	+
Preference number: 3 (lower is better) Translates to: GFFLLRWERPLS*QYHSTPTSKSE Trigger: TTCTGATTTAGAAGTTGGAGTTGAGTGATATTGTCATGACAATGGCCTCTCCCACCTCAACAAAAAGAAACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092700.5
3UTR TCA 72 bp	AATGTTGCATTACCAAAGACTCTGGTTTCTTTTTGTTaGGGTGGGAGAGGCCATTGTCATGACAATATCACT	+
Preference number: 3 (lower is better) Translates to: NVALPKTLVSFC*GGRGHCHDNIT Trigger: AGTGATATTGTCATGACAATGGCCTCTCCCACCTCAACAAAAAGAAACCAGAGTCTTTGGTAATGCAACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092700.5
CDS-3UTR CCA 90 bp	CTTTTTGTTGAGGTGGGAGAGGCCATTGTCATGACAATATCACTCAACTCCAACGACAGTCAGCAGGTCTaGGGTTGGGTGGCAGGAGTT	+
Preference number: 4 (lower is better) Translates to: LFVEVGEAIVMTISLNSNDSQQV*GWVAGV Trigger: AACTCCTGCCACCCAACCCCAGACCTGCTGACTGTC...GTTGGAGTTGAGTGATATTGTCATGACAATGGCCTCTCCCACCTCAACAAAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092700.5
CDS-3UTR CCA 90 bp	CTGAAAACAGAAACCCCAAACACCCAAAGAAAGGCACACATTAAGATGAAGGAGGGGCTCCTCACAGCCTaGCTGCACATAGGTGGTGAG	+
Preference number: 4 (lower is better) Translates to: LKTETPNTQRKAHIKMKEGLLTA*LHIGGE Trigger: CTCACCACCTATGTGCAGCCAGGCTGTGAGGAGCCC...CTCCTTCATCTTAATGTGTGCCTTTCTTTGGGTGTTTGGGGTTTCTGTTTTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092700.5

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