Pregenerated sensors for KRTAP3-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069721Ensembl transcript IDs: ENSMUST00000092699.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGACTGATAACAAATCAGGAAGGCGAGCTAGCAAGCTCGCTCTGGTaGTGCCTTCATTTTGAACCTTCAATTAATAATAATAATAATAAT | + |
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Preference number: 1 (lower is better) Translates to: RLITNQEGELASSLW*CLHFEPSINNNNNN Trigger: ATTATTATTATTATTATTAATTGAAGGTTCAAAATGAAGGCAGCACCAGAGCGAGCTTGCTAGCTCGCCTTCCTGATTTGTTATCAGTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR GCA 90 bp | CTGATAACAAATCAGGAAGGCGAGCTAGCAAGCTCGCTCTGGTGCTaGCTTCATTTTGAACCTTCAATTAATAATAATAATAATAATAAT | + |
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Preference number: 1 (lower is better) Translates to: LITNQEGELASSLWC*LHFEPSINNNNNNN Trigger: ATTATTATTATTATTATTATTAATTGAAGGTTCAAAATGAAGGCAGCACCAGAGCGAGCTTGCTAGCTCGCCTTCCTGATTTGTTATCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR-3UTR CCA 90 bp | TGGACAGTAAAGACTGATAACAAATCAGGAAGGCGAGCTAGCAAGCTCGCTCTGATTGAGACAAGCAGGTaGTGGTTGGGCAGTTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: WTVKTDNKSGRRASKLALIETSR*WLGSSW Trigger: CCAGGAACTGCCCAACCACCACCTGCTTGTCTCAAT...CAGAGCGAGCTTGCTAGCTCGCCTTCCTGATTTGTTATCAGTCTTTACTGTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR-3UTR CCA 90 bp | CCATGGCTTAGGTCATCTGCCTATTTTAACATTGTGAAAACTATTGAGACAAGCTGGTTGGGCAGTTCCTaGGGTTTTCAGTATGAGGCG | + |
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Preference number: 2 (lower is better) Translates to: PWLRSSAYFNIVKTIETSWLGSS*GFQYEA Trigger: CGCCTCATACTGAAAACCCCAGGAACTGCCCAACCA...GCTTGTCTCAATAGTTTTCACAATGTTAAAATAGGCAGATGACCTAAGCCATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR TCA 72 bp | TTCCATGGCTTAGGTCATCTGCCTATTTTAACATTGTaGAAACTATTGAGACAAGCAGGTGGTGGTTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: FHGLGHLPILTL*KLLRQAGGGWA Trigger: TGCCCAACCACCACCTGCTTGTCTCAATAGTTTTCACAATGTTAAAATAGGCAGATGACCTAAGCCATGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR GCA 72 bp | ACAAATCAGGAAGGCGAGCTAGCAAGCTCGCTCTGGTaGTGCCTTCATTTTGAACCTTCAATTAATAATAAT | + |
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Preference number: 3 (lower is better) Translates to: TNQEGELASSLW*CLHFEPSINNN Trigger: ATTATTATTAATTGAAGGTTCAAAATGAAGGCAGCACCAGAGCGAGCTTGCTAGCTCGCCTTCCTGATTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR CCA 72 bp | ATAACAAATCAGGAAGGCGAGCTAGCAAGCTCGCTCTaGTGCTGCCTTCATTTTGAACCTTCAATTAATAAT | + |
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Preference number: 3 (lower is better) Translates to: ITNQEGELASSL*CCLHFEPSINN Trigger: ATTATTAATTGAAGGTTCAAAATGAAGGCAGCACCAGAGCGAGCTTGCTAGCTCGCCTTCCTGATTTGTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR TCA 72 bp | GATCCCAGAAGCAACATGGCCCAAACCCCCATAGTTTaGAATCTTAAAGATTTCAATAGCACTTTCATAATG | + |
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Preference number: 3 (lower is better) Translates to: DPRSNMAQTPIV*NLKDFNSTFIM Trigger: CATTATGAAAGTGCTATTGAAATCTTTAAGATTTCAAACTATGGGGGTTTGGGCCATGTTGCTTCTGGGATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| CDS-3UTR GCA 90 bp | ATTGAGACAAGCAGGTGGTGGTTGGGCAGTTCCTGGGGTTTTCAGTATGAGGCGGGCCGGTGGGGACACTaGAGCAGCGGGCAACACAGC | + |
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Preference number: 4 (lower is better) Translates to: IETSRWWLGSSWGFQYEAGRWGH*SSGQHS Trigger: GCTGTGTTGCCCGCTGCTGCAGTGTCCCCACCGGCC...CGCCTCATACTGAAAACCCCAGGAACTGCCCAACCACCACCTGCTTGTCTCAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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| 3UTR CAA 72 bp | TTCAATAGCACTTTCATAATGGAAGATGTTCACCTGTaGAAATCAGTCAAATGGCTATTCATCCGGATCACA | + |
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Preference number: 4 (lower is better) Translates to: FNSTFIMEDVHL*KSVKWLFIRIT Trigger: TGTGATCCGGATGAATAGCCATTTGACTGATTTCAACAGGTGAACATCTTCCATTATGAAAGTGCTATTGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092699.3 |
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