Pregenerated sensors for KRTAP28-13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000101315

Ensembl transcript IDs: ENSMUST00000188005.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GCTGGGGAGACAGCAGGGTATACTCAGACTAGGACAGAGGAAAGCCTTAGCAGCTTGCATCCACACTTCTaGTGGCAGCAGCACTTCTGC	+
Preference number: 4 (lower is better) Translates to: AGETAGYTQTRTEESLSSLHPHF*WQQHFC Trigger: GCAGAAGTGCTGCTGCCAGCAGAAGTGTGGATGCAA...GCTGCTAAGGCTTTCCTCTGTCCTAGTCTGAGTATACCCTGCTGTCTCCCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188005.2
CDS-3UTR CCA 90 bp	ACTTCAGAGTATTCAAATCAGGCAACAAAGTTTCAGAGTCCGGATTCTAGAGAGCATCCACACTTCTGCTaGCAGCAGCACTTCTGCTGG	+
Preference number: 4 (lower is better) Translates to: TSEYSNQATKFQSPDSREHPHFC*QQHFCW Trigger: CCAGCAGAAGTGCTGCTGCCAGCAGAAGTGTGGATG...CTCTCTAGAATCCGGACTCTGAAACTTTGTTGCCTGATTTGAATACTCTGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188005.2
3UTR CAA 72 bp	AGAAGGAAACACAATGGGGACCATTATACAATCTTATaGACATCAGTAACCAAGATGCCCTGCACCTTTGTC	+
Preference number: 4 (lower is better) Translates to: RRKHNGDHYTIL*TSVTKMPCTFV Trigger: GACAAAGGTGCAGGGCATCTTGGTTACTGATGTCAATAAGATTGTATAATGGTCCCCATTGTGTTTCCTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188005.2

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