Pregenerated sensors for KRTAP27-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090515Ensembl transcript IDs: ENSMUST00000165580.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCTCTGGAGTTCTGGGAACTTTGCACACAGGGGTCCACTTTGCACTaGTTCTGTCCACAATTGGCTGGTTGGCAGGTAGAAGTTTCACTG | + |
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Preference number: 5 (lower is better) Translates to: ALEFWELCTQGSTLH*FCPQLAGWQVEVSL Trigger: CAGTGAAACTTCTACCTGCCAACCAGCCAATTGTGGACAGAACCAGTGCAAAGTGGACCCCTGTGTGCAAAGTTCCCAGAACTCCAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CCA 90 bp | GCACTTGTGAACCACCAGTCACACAGCATGTTGGCTCATAAGTGTTaGAAGATTCCACAAGATGTAGCCCAGAGACAATACTGCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: ALVNHQSHSMLAHKC*KIPQDVAQRQYCWR Trigger: CCTCCAGCAGTATTGTCTCTGGGCTACATCTTGTGGAATCTTCCAACACTTATGAGCCAACATGCTGTGTGACTGGTGGTTCACAAGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CCA 90 bp | TTGCACACAGGGGTCCACTTTGCACTGGTTCTGTCCACAATTGGCTaGTTGGCAGGTAGAAGTTTCACTGTAGGTTTCTTGAAAGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: LHTGVHFALVLSTIG*LAGRSFTVGFLKVV Trigger: GACAACTTTCAAGAAACCTACAGTGAAACTTCTACCTGCCAACCAGCCAATTGTGGACAGAACCAGTGCAAAGTGGACCCCTGTGTGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS TCA 90 bp | AGGTTGGTAGCTCTGGGCTACAAAACCCACTTGCTTATAATTCCTTaGTTGGCAGGTTTGAGAAGCACTCTCTGGCACAGCTGGAGATAT | + |
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Preference number: 5 (lower is better) Translates to: RLVALGYKTHLLIIP*LAGLRSTLWHSWRY Trigger: ATATCTCCAGCTGTGCCAGAGAGTGCTTCTCAAACCTGCCAATCAAGGAATTATAAGCAAGTGGGTTTTGTAGCCCAGAGCTACCAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS TCA 72 bp | CTGCTGGAGGAATTACAGGACCTGGACTCAGAGACCTaGGAGCAGCATGGGCTGGATTCAAACTCCAACGTC | + |
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Preference number: 6 (lower is better) Translates to: LLEELQDLDSET*EQHGLDSNSNV Trigger: GACGTTGGAGTTTGAATCCAGCCCATGCTGCTCTCAGGTCTCTGAGTCCAGGTCCTGTAATTCCTCCAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CCA 72 bp | TTCTGGGAACTTTGCACACAGGGGTCCACTTTGCACTaGTTCTGTCCACAATTGGCTGGTTGGCAGGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: FWELCTQGSTLH*FCPQLAGWQVE Trigger: TTCTACCTGCCAACCAGCCAATTGTGGACAGAACCAGTGCAAAGTGGACCCCTGTGTGCAAAGTTCCCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CCA 72 bp | AGGACCTGGACTCAGAGACCTGAGAGCAGCATGGGCTaGATTCAAACTCCAACGTCTGGCAACTTTCAAATG | + |
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Preference number: 6 (lower is better) Translates to: RTWTQRPESSMG*IQTPTSGNFQM Trigger: CATTTGAAAGTTGCCAGACGTTGGAGTTTGAATCCAGCCCATGCTGCTCTCAGGTCTCTGAGTCCAGGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CCA 72 bp | ATTACAGGACCTGGACTCAGAGACCTGAGAGCAGCATaGGCTGGATTCAAACTCCAACGTCTGGCAACTTTC | + |
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Preference number: 6 (lower is better) Translates to: ITGPGLRDLRAA*AGFKLQRLATF Trigger: GAAAGTTGCCAGACGTTGGAGTTTGAATCCAGCCCATGCTGCTCTCAGGTCTCTGAGTCCAGGTCCTGTAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CCA 72 bp | GGGGTCCACTTTGCACTGGTTCTGTCCACAATTGGCTaGTTGGCAGGTAGAAGTTTCACTGTAGGTTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: GVHFALVLSTIG*LAGRSFTVGFL Trigger: CAAGAAACCTACAGTGAAACTTCTACCTGCCAACCAGCCAATTGTGGACAGAACCAGTGCAAAGTGGACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 90 bp | CACACAGGGGTCCACTTTGCACTGGTTCTGTCCACAATTGGCTGGTaGGCAGGTAGAAGTTTCACTGTAGGTTTCTTGAAAGTTGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: HTGVHFALVLSTIGW*AGRSFTVGFLKVVQ Trigger: CTGGACAACTTTCAAGAAACCTACAGTGAAACTTCTACCTGCCAACCAGCCAATTGTGGACAGAACCAGTGCAAAGTGGACCCCTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS TCA 72 bp | GCTCTGGGCTACAAAACCCACTTGCTTATAATTCCTTaGTTGGCAGGTTTGAGAAGCACTCTCTGGCACAGC | + |
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Preference number: 6 (lower is better) Translates to: ALGYKTHLLIIP*LAGLRSTLWHS Trigger: GCTGTGCCAGAGAGTGCTTCTCAAACCTGCCAATCAAGGAATTATAAGCAAGTGGGTTTTGTAGCCCAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS GCA 72 bp | CAAATTGTTTGTTCAGCTCTGGAGTTCTGGGAACTTTaGACACAGGGGTCCACTTTGCACTGGTTCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: QIVCSALEFWEL*TQGSTLHWFCP Trigger: TGGACAGAACCAGTGCAAAGTGGACCCCTGTGTGCAAAGTTCCCAGAACTCCAGAGCTGAACAAACAATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 72 bp | ACAAATTGTTTGTTCAGCTCTGGAGTTCTGGGAACTTaGCACACAGGGGTCCACTTTGCACTGGTTCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: TNCLFSSGVLGT*HTGVHFALVLS Trigger: GGACAGAACCAGTGCAAAGTGGACCCCTGTGTGCAAAGTTCCCAGAACTCCAGAGCTGAACAAACAATTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 90 bp | CAGGTTGGTAGCTCTGGGCTACAAAACCCACTTGCTTATAATTCCTaGATTGGCAGGTTTGAGAAGCACTCTCTGGCACAGCTGGAGATA | + |
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Preference number: 6 (lower is better) Translates to: QVGSSGLQNPLAYNS*IGRFEKHSLAQLEI Trigger: TATCTCCAGCTGTGCCAGAGAGTGCTTCTCAAACCTGCCAATCAAGGAATTATAAGCAAGTGGGTTTTGTAGCCCAGAGCTACCAACCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 72 bp | AGCTCTGGGCTACAAAACCCACTTGCTTATAATTCCTaGATTGGCAGGTTTGAGAAGCACTCTCTGGCACAG | + |
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Preference number: 6 (lower is better) Translates to: SSGLQNPLAYNS*IGRFEKHSLAQ Trigger: CTGTGCCAGAGAGTGCTTCTCAAACCTGCCAATCAAGGAATTATAAGCAAGTGGGTTTTGTAGCCCAGAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 72 bp | GTCCACTTTGCACTGGTTCTGTCCACAATTGGCTGGTaGGCAGGTAGAAGTTTCACTGTAGGTTTCTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: VHFALVLSTIGW*AGRSFTVGFLK Trigger: TTTCAAGAAACCTACAGTGAAACTTCTACCTGCCAACCAGCCAATTGTGGACAGAACCAGTGCAAAGTGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 72 bp | AAGACAATGCCATCTTCAAAGCTTTTAGGATTAGAGTaGTGTGTGATGGAAGACAGTGACGGAGCTTTACCC | + |
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Preference number: 6 (lower is better) Translates to: KTMPSSKLLGLE*CVMEDSDGALP Trigger: GGGTAAAGCTCCGTCACTGTCTTCCATCACACACAACTCTAATCCTAAAAGCTTTGAAGATGGCATTGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 72 bp | TGTTCTTTCACAGGTCTTGGAATTAGAACAAATTGTTaGTTCAGCTCTGGAGTTCTGGGAACTTTGCACACA | + |
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Preference number: 6 (lower is better) Translates to: CSFTGLGIRTNC*FSSGVLGTLHT Trigger: TGTGTGCAAAGTTCCCAGAACTCCAGAGCTGAACAAACAATTTGTTCTAATTCCAAGACCTGTGAAAGAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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| CDS CAA 72 bp | ACAGCTGGAGATATTTCTCTTGTTCTTTCACAGGTCTaGGAATTAGAACAAATTGTTTGTTCAGCTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: TAGDISLVLSQV*ELEQIVCSALE Trigger: CTCCAGAGCTGAACAAACAATTTGTTCTAATTCCAAGACCTGTGAAAGAACAAGAGAAATATCTCCAGCTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165580.3 |
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