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Pregenerated sensors for KRTAP24-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050239

Ensembl transcript IDs: ENSMUST00000052512.4

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAATACTTTCTGGCTTCACTCAGTCCTGAGTATTTCTCCCAAGGGTaGAGGCTAAGAGTCAGCTGTCAATCAACCCTCTGCTTTCTGTCT +
Preference number: 1 (lower is better)
Translates to: KYFLASLSPEYFSQG*RLRVSCQSTLCFLS
Trigger: AGACAGAAAGCAGAGGGTTGATTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAAATACTCAGGACTGAGTGAAGCCAGAAAGTATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR TCA 90 bp CGTTTGTCTTTCTCTTCTCAAATACTTTCTGGCTTCACTCAGTCCTaGGTATTTCTCCCAAGGGTGGAGGCTAAGAGTCAGCTGTCAATC +
Preference number: 1 (lower is better)
Translates to: RLSFSSQILSGFTQS*VFLPRVEAKSQLSI
Trigger: GATTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAAATACTCAGGACTGAGTGAAGCCAGAAAGTATTTGAGAAGAGAAAGACAAACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR GCA 90 bp TTCTCCCAAGGGTGGAGGCTAAGAGTCAGCTGTCAATCAACCCTCTaGTTTCTGTCTTCTTTGAAAGAGACAATTGCTGAGGTTTTCTCT +
Preference number: 1 (lower is better)
Translates to: FSQGWRLRVSCQSTL*FLSSLKETIAEVFS
Trigger: AGAGAAAACCTCAGCAATTGTCTCTTTCAAAGAAGACAGAAAGCAGAGGGTTGATTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR TCA 90 bp AGCTATGACTACCCTCATAATCAGACTAACAGAAGAATAAACTACTaGATGGTTAATTGGGTCTACAGTTACACTTGTGGCTGGTGTGAC +
Preference number: 1 (lower is better)
Translates to: SYDYPHNQTNRRINY*MVNWVYSYTCGWCD
Trigger: GTCACACCAGCCACAAGTGTAACTGTAGACCCAATTAACCATTCAGTAGTTTATTCTTCTGTTAGTCTGATTATGAGGGTAGTCATAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR-3UTR TCA 90 bp TCACTCAGTCCTGAGTATTTCTCCCAAGGGTGGAGGCTAAGAGTCAGCTGTCAACACTTGTGGCTGGTGTaGCGACCTTCTGAGATGACT +
Preference number: 2 (lower is better)
Translates to: SLSPEYFSQGWRLRVSCQHLWLV*RPSEMT
Trigger: AGTCATCTCAGAAGGTCGTCACACCAGCCACAAGTG...TTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAAATACTCAGGACTGAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR-3UTR TCA 90 bp GAGGAATCTAGAACACAGATGAATTCTAGGAGTCACGGAGAATCTACAACAGCGAAGAAACCACAGACCTaGGTAAGACTTGCGATCCTC +
Preference number: 2 (lower is better)
Translates to: EESRTQMNSRSHGESTTAKKPQT*VRLAIL
Trigger: GAGGATCGCAAGTCTTACTCAGGTCTGTGGTTTCTT...CGCTGTTGTAGATTCTCCGTGACTCCTAGAATTCATCTGTGTTCTAGATTCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR-3UTR TCA 90 bp GAGGAATCTAGAACACAGATGAATTCTAGGAGTCACGGAGAATCTACAACAGCGGAAAGAGACAATTGCTaGGGTTTTCTCTTTAGTAGC +
Preference number: 2 (lower is better)
Translates to: EESRTQMNSRSHGESTTAERDNC*GFLFSS
Trigger: GCTACTAAAGAGAAAACCTCAGCAATTGTCTCTTTC...CGCTGTTGTAGATTCTCCGTGACTCCTAGAATTCATCTGTGTTCTAGATTCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR CAA 90 bp AGAGAAAGGATCACAACCCAAGTGACGAGCAGAGTAAGGAAGATGTaGATGATTTTCCTTCATATGGAATCTCTTCAAGTGAGTTCGTTC +
Preference number: 2 (lower is better)
Translates to: RERITTQVTSRVRKM*MIFLHMESLQVSSF
Trigger: GAACGAACTCACTTGAAGAGATTCCATATGAAGGAAAATCATCAACATCTTCCTTACTCTGCTCGTCACTTGGGTTGTGATCCTTTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR CAA 90 bp AGGCTAAGAGTCAGCTGTCAATCAACCCTCTGCTTTCTGTCTTCTTaGAAAGAGACAATTGCTGAGGTTTTCTCTTTAGTAGCTATGGTT +
Preference number: 2 (lower is better)
Translates to: RLRVSCQSTLCFLSS*KETIAEVFSLVAMV
Trigger: AACCATAGCTACTAAAGAGAAAACCTCAGCAATTGTCTCTTTCAAAGAAGACAGAAAGCAGAGGGTTGATTGACAGCTGACTCTTAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR CCA 72 bp CTGGCTTCACTCAGTCCTGAGTATTTCTCCCAAGGGTaGAGGCTAAGAGTCAGCTGTCAATCAACCCTCTGC +
Preference number: 3 (lower is better)
Translates to: LASLSPEYFSQG*RLRVSCQSTLC
Trigger: GCAGAGGGTTGATTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAAATACTCAGGACTGAGTGAAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR TCA 72 bp AGTTACACTTGTGGCTGGTGTGACGACCTTCTGAGATaGCTAGATCAATTTAGCAAAATAATAAGAAACCAC +
Preference number: 3 (lower is better)
Translates to: SYTCGWCDDLLR*LDQFSKIIRNH
Trigger: GTGGTTTCTTATTATTTTGCTAAATTGATCTAGTCATCTCAGAAGGTCGTCACACCAGCCACAAGTGTAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR TCA 72 bp TACCCTCATAATCAGACTAACAGAAGAATAAACTACTaGATGGTTAATTGGGTCTACAGTTACACTTGTGGC +
Preference number: 3 (lower is better)
Translates to: YPHNQTNRRINY*MVNWVYSYTCG
Trigger: GCCACAAGTGTAACTGTAGACCCAATTAACCATTCAGTAGTTTATTCTTCTGTTAGTCTGATTATGAGGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR TCA 90 bp TCACTCAGTCCTGAGTATTTCTCCCAAGGGTGGAGGCTAAGAGTCAGCTGTCAATTGGAGCACAAGTCTTaGGCACACAGCTGGGAGAGT +
Preference number: 4 (lower is better)
Translates to: SLSPEYFSQGWRLRVSCQLEHKS*AHSWES
Trigger: ACTCTCCCAGCTGTGTGCTCAAGACTTGTGCTCCAA...TTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAAATACTCAGGACTGAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CCA 90 bp TCACTCAGTCCTGAGTATTTCTCCCAAGGGTGGAGGCTAAGAGTCAGCTGTCAACGTGGGATCACAACTTaGAGCACAAGTCTTGAGCAC +
Preference number: 4 (lower is better)
Translates to: SLSPEYFSQGWRLRVSCQRGITT*STSLEH
Trigger: GTGCTCAAGACTTGTGCTCCAAGTTGTGATCCCACG...TTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAAATACTCAGGACTGAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CCA 90 bp AGACTTGCGATCCTCCATCAGCCTCTTTGGAGCTCTTTTAGGAGCTATGAATCGTGCCTTGGTAGCTGCTaGGTAAGTAAGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: RLAILHQPLWSSFRSYESCLGSC*VSKVQR
Trigger: CCTTTGGACCTTACTTACCCAGCAGCTACCAAGGCA...CGATTCATAGCTCCTAAAAGAGCTCCAAAGAGGCTGATGGAGGATCGCAAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR GCA 90 bp GAGGAATCTAGAACACAGATGAATTCTAGGAGTCACGGAGAATCTACAACAGCGTTGCAGACAGGGAATTaGAAGGCACACAGGAGTCCG +
Preference number: 4 (lower is better)
Translates to: EESRTQMNSRSHGESTTALQTGN*KAHRSP
Trigger: CGGACTCCTGTGTGCCTTGCAATTCCCTGTCTGCAA...CGCTGTTGTAGATTCTCCGTGACTCCTAGAATTCATCTGTGTTCTAGATTCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR GCA 90 bp ATGGTTAATTGGGTCTACAGTTACACTTGTGGCTGGTGTGACGACCTTCTGAGAGGGAAGGAATTAAATTaGCCTATGAAGCCGGAGCCA +
Preference number: 4 (lower is better)
Translates to: MVNWVYSYTCGWCDDLLRGKELN*PMKPEP
Trigger: TGGCTCCGGCTTCATAGGGCAATTTAATTCCTTCCC...TCTCAGAAGGTCGTCACACCAGCCACAAGTGTAACTGTAGACCCAATTAACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR TCA 90 bp CTGTCTTCTTTGAAAGAGACAATTGCTGAGGTTTTCTCTTTAGTAGCTATGGTTCATCTGAGCAGACTGTaGTGGAAGGCGTCACGGGGA +
Preference number: 4 (lower is better)
Translates to: LSSLKETIAEVFSLVAMVHLSRL*WKASRG
Trigger: TCCCCGTGACGCCTTCCATCACAGTCTGCTCAGATG...AACCATAGCTACTAAAGAGAAAACCTCAGCAATTGTCTCTTTCAAAGAAGACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR GCA 90 bp GAGGAATCTAGAACACAGATGAATTCTAGGAGTCACGGAGAATCTACAACAGCGGAGGTCTGTTACTGCTaGATAAGTATCTCAGAGGTG +
Preference number: 4 (lower is better)
Translates to: EESRTQMNSRSHGESTTAEVCYC*ISISEV
Trigger: CACCTCTGAGATACTTATGCAGCAGTAACAGACCTC...CGCTGTTGTAGATTCTCCGTGACTCCTAGAATTCATCTGTGTTCTAGATTCCTC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR GCA 90 bp GAGGAATCTAGAACACAGATGAATTCTAGGAGTCACGGAGAATCTACAACAGCGACTAACAACTTGATTTaGAGACAGGGAATTGCAAGG +
Preference number: 4 (lower is better)
Translates to: EESRTQMNSRSHGESTTATNNLI*RQGIAR
Trigger: CCTTGCAATTCCCTGTCTGCAAATCAAGTTGTTAGT...CGCTGTTGTAGATTCTCCGTGACTCCTAGAATTCATCTGTGTTCTAGATTCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR TCA 90 bp ACAACCCAAGTGACGAGCAGAGTAAGGAAGATGTTGATGATTTTCCTTCATATGCAGTCACTAACAACTTaGTTTGCAGACAGGGAATTG +
Preference number: 4 (lower is better)
Translates to: TTQVTSRVRKMLMIFLHMQSLTT*FADREL
Trigger: CAATTCCCTGTCTGCAAATCAAGTTGTTAGTGACTG...CATATGAAGGAAAATCATCAACATCTTCCTTACTCTGCTCGTCACTTGGGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
3UTR CAA 72 bp GTCAGCTGTCAATCAACCCTCTGCTTTCTGTCTTCTTaGAAAGAGACAATTGCTGAGGTTTTCTCTTTAGTA +
Preference number: 4 (lower is better)
Translates to: VSCQSTLCFLSS*KETIAEVFSLV
Trigger: TACTAAAGAGAAAACCTCAGCAATTGTCTCTTTCAAAGAAGACAGAAAGCAGAGGGTTGATTGACAGCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CCA 90 bp CTGTCTTCTTTGAAAGAGACAATTGCTGAGGTTTTCTCTTTAGTAGCTATGGTTGATAGTATAGCAAGATaGAGAGAAGCCATTGGTGAT +
Preference number: 4 (lower is better)
Translates to: LSSLKETIAEVFSLVAMVDSIAR*REAIGD
Trigger: ATCACCAATGGCTTCTCTCCATCTTGCTATACTATC...AACCATAGCTACTAAAGAGAAAACCTCAGCAATTGTCTCTTTCAAAGAAGACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS TCA 90 bp AAGGCACACAGGAGTCCGTGGGATCACAACTTGGAGCACAAGTCTTaGGCACACAGCTGGGAGAGTCACAGAAGGATGCTTCACAGTAGG +
Preference number: 5 (lower is better)
Translates to: KAHRSPWDHNLEHKS*AHSWESHRRMLHSR
Trigger: CCTACTGTGAAGCATCCTTCTGTGACTCTCCCAGCTGTGTGCTCAAGACTTGTGCTCCAAGTTGTGATCCCACGGACTCCTGTGTGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CAA 90 bp TCACTCAGTCCTGAGTATTTCTCCCAAGGGTGGAGGCTAAGAGTCAGCTGTCAACTTGGAGCACAAGTCTaGAGCACACAGCTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: SLSPEYFSQGWRLRVSCQLGAQV*STQLGE
Trigger: CTCTCCCAGCTGTGTGCTCAAGACTTGTGCTCCAAG...TTGACAGCTGACTCTTAGCCTCCACCCTTGGGAGAAATACTCAGGACTGAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS TCA 90 bp CTGGGTCTGGCTCTGATCTTGGTAGTTTCGCAGTCACTAACAACTTaGTTTGCAGACAGGGAATTGCAAGGCACACAGGAGTCCGTGGGA +
Preference number: 5 (lower is better)
Translates to: LGLALILVVSQSLTT*FADRELQGTQESVG
Trigger: TCCCACGGACTCCTGTGTGCCTTGCAATTCCCTGTCTGCAAATCAAGTTGTTAGTGACTGCGAAACTACCAAGATCAGAGCCAGACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS GCA 90 bp TCTGGCTCTGATCTTGGTAGTTTCGCAGTCACTAACAACTTGATTTaGAGACAGGGAATTGCAAGGCACACAGGAGTCCGTGGGATCACA +
Preference number: 5 (lower is better)
Translates to: SGSDLGSFAVTNNLI*RQGIARHTGVRGIT
Trigger: TGTGATCCCACGGACTCCTGTGTGCCTTGCAATTCCCTGTCTGCAAATCAAGTTGTTAGTGACTGCGAAACTACCAAGATCAGAGCCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CAA 90 bp ATGGTTAATTGGGTCTACAGTTACACTTGTGGCTGGTGTGACGACCTTCTGAGAGAAGCCGGAGCCATTTaGAAGAGTCTGACAGGCTTT +
Preference number: 5 (lower is better)
Translates to: MVNWVYSYTCGWCDDLLREAGAI*KSLTGF
Trigger: AAAGCCTGTCAGACTCTTCAAAATGGCTCCGGCTTC...TCTCAGAAGGTCGTCACACCAGCCACAAGTGTAACTGTAGACCCAATTAACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CAA 90 bp ATGGTTAATTGGGTCTACAGTTACACTTGTGGCTGGTGTGACGACCTTCTGAGAAGGGAAGGAATTAAATaGCCCTATGAAGCCGGAGCC +
Preference number: 5 (lower is better)
Translates to: MVNWVYSYTCGWCDDLLRREGIK*PYEAGA
Trigger: GGCTCCGGCTTCATAGGGCAATTTAATTCCTTCCCT...TCTCAGAAGGTCGTCACACCAGCCACAAGTGTAACTGTAGACCCAATTAACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CAA 90 bp GAGGAATCTAGAACACAGATGAATTCTAGGAGTCACGGAGAATCTACAACAGCGGGTCTGGCTCTGATCTaGGTAGTTTCGCAGTCACTA +
Preference number: 5 (lower is better)
Translates to: EESRTQMNSRSHGESTTAGLALI*VVSQSL
Trigger: TAGTGACTGCGAAACTACCAAGATCAGAGCCAGACC...CGCTGTTGTAGATTCTCCGTGACTCCTAGAATTCATCTGTGTTCTAGATTCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CAA 90 bp CAGAGCAAAATGACAGAGGAATCTAGAACACAGATGAATTCTAGGAGTCACGGACTTCTATATCCATTGTaGCCCAGAATACAGTGGTGC +
Preference number: 5 (lower is better)
Translates to: QSKMTEESRTQMNSRSHGLLYPL*PRIQWC
Trigger: GCACCACTGTATTCTGGGCAACAATGGATATAGAAG...TCCGTGACTCCTAGAATTCATCTGTGTTCTAGATTCCTCTGTCATTTTGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS-3UTR CAA 90 bp ACAACCCAAGTGACGAGCAGAGTAAGGAAGATGTTGATGATTTTCCTTCATATGGATGGAGAGAAGCCATaGGTGATGAATCCAAAATTT +
Preference number: 5 (lower is better)
Translates to: TTQVTSRVRKMLMIFLHMDGEKP*VMNPKF
Trigger: AAATTTTGGATTCATCACCAATGGCTTCTCTCCATC...CATATGAAGGAAAATCATCAACATCTTCCTTACTCTGCTCGTCACTTGGGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS CAA 90 bp CACACAGCTGGGAGAGTCACAGAAGGATGCTTCACAGTAGGAGTCTaGGCAATGGTCCAGAAGCCAGAGATTGCCTTGGTAGCTGCTGGG +
Preference number: 6 (lower is better)
Translates to: HTAGRVTEGCFTVGV*AMVQKPEIALVAAG
Trigger: CCCAGCAGCTACCAAGGCAATCTCTGGCTTCTGGACCATTGCCAAGACTCCTACTGTGAAGCATCCTTCTGTGACTCTCCCAGCTGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS TCA 72 bp AGGAGTCCGTGGGATCACAACTTGGAGCACAAGTCTTaGGCACACAGCTGGGAGAGTCACAGAAGGATGCTT +
Preference number: 6 (lower is better)
Translates to: RSPWDHNLEHKS*AHSWESHRRML
Trigger: AAGCATCCTTCTGTGACTCTCCCAGCTGTGTGCTCAAGACTTGTGCTCCAAGTTGTGATCCCACGGACTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS CAA 90 bp GCTGGGTCTGGCTCTGATCTTGGTAGTTTCGCAGTCACTAACAACTaGATTTGCAGACAGGGAATTGCAAGGCACACAGGAGTCCGTGGG +
Preference number: 6 (lower is better)
Translates to: AGSGSDLGSFAVTNN*ICRQGIARHTGVRG
Trigger: CCCACGGACTCCTGTGTGCCTTGCAATTCCCTGTCTGCAAATCAAGTTGTTAGTGACTGCGAAACTACCAAGATCAGAGCCAGACCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS CAA 72 bp GGGAGAGTCACAGAAGGATGCTTCACAGTAGGAGTCTaGGCAATGGTCCAGAAGCCAGAGATTGCCTTGGTA +
Preference number: 6 (lower is better)
Translates to: GRVTEGCFTVGV*AMVQKPEIALV
Trigger: TACCAAGGCAATCTCTGGCTTCTGGACCATTGCCAAGACTCCTACTGTGAAGCATCCTTCTGTGACTCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS CAA 72 bp GTGCGGGGCCTGAAGATTCTTAGGGAAGGAATTAAATaGCCCTATGAAGCCGGAGCCATTTTGAAGAGTCTG +
Preference number: 6 (lower is better)
Translates to: VRGLKILREGIK*PYEAGAILKSL
Trigger: CAGACTCTTCAAAATGGCTCCGGCTTCATAGGGCAATTTAATTCCTTCCCTAAGAATCTTCAGGCCCCGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS TCA 72 bp GCTCTGATCTTGGTAGTTTCGCAGTCACTAACAACTTaGTTTGCAGACAGGGAATTGCAAGGCACACAGGAG +
Preference number: 6 (lower is better)
Translates to: ALILVVSQSLTT*FADRELQGTQE
Trigger: CTCCTGTGTGCCTTGCAATTCCCTGTCTGCAAATCAAGTTGTTAGTGACTGCGAAACTACCAAGATCAGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS GCA 72 bp GATCTTGGTAGTTTCGCAGTCACTAACAACTTGATTTaGAGACAGGGAATTGCAAGGCACACAGGAGTCCGT +
Preference number: 6 (lower is better)
Translates to: DLGSFAVTNNLI*RQGIARHTGVR
Trigger: ACGGACTCCTGTGTGCCTTGCAATTCCCTGTCTGCAAATCAAGTTGTTAGTGACTGCGAAACTACCAAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4
CDS CCA 72 bp ACTGCGGGGATGGTAGCTACTGATAGTATAGCAAGATaGAGAGAAGCCATTGGTGATGAATCCAAAATTTCC +
Preference number: 6 (lower is better)
Translates to: TAGMVATDSIAR*REAIGDESKIS
Trigger: GGAAATTTTGGATTCATCACCAATGGCTTCTCTCCATCTTGCTATACTATCAGTAGCTACCATCCCCGCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052512.4