Pregenerated sensors for KRTAP2-4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060756Ensembl transcript IDs: ENSMUST00000074926.6
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAACTTGATAGGCCTTTACGGTTGGGTGAACTGGGGAAGTACAGATaGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGACG | + |
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Preference number: 1 (lower is better) Translates to: ELDRPLRLGELGKYR*AAKVVSLCSIRSRT Trigger: CGTCCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTACTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| 3UTR CCA 90 bp | AATATATATATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTaGGGAAGTACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCA | + |
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Preference number: 1 (lower is better) Translates to: NIYMENLIGLYGWVN*GSTDGLQKWCLSAP Trigger: TGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTACTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| 3UTR CCA 72 bp | AGGCCTTTACGGTTGGGTGAACTGGGGAAGTACAGATaGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGG | + |
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Preference number: 3 (lower is better) Translates to: RPLRLGELGKYR*AAKVVSLCSIR Trigger: CCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTACTTCCCCAGTTCACCCAACCGTAAAGGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| 3UTR CCA 72 bp | ATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTaGGGAAGTACAGATGGGCTGCAAAAGTGGTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: MENLIGLYGWVN*GSTDGLQKWCL Trigger: GAGACACCACTTTTGCAGCCCATCTGTACTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| 3UTR CCA 72 bp | AATATATATATGGAGAACTTGATAGGCCTTTACGGTTaGGTGAACTGGGGAAGTACAGATGGGCTGCAAAAG | + |
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Preference number: 3 (lower is better) Translates to: NIYMENLIGLYG*VNWGSTDGLQK Trigger: CTTTTGCAGCCCATCTGTACTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR GCA 90 bp | GGGAAGTACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGGGGCGACAGCAGCCCTaGTGCAGGCTGCAGGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: GKYRWAAKVVSLCSIRSRGRQQP*CRLQGS Trigger: TGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCGCCC...CCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTACTTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR TCA 90 bp | TACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGACGAGTGCAGGGAGCCTGCACTaGGATGGGCTGGCAGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: YRWAAKVVSLCSIRSRTSAGSLH*DGLAAG Trigger: ACCTGCTGCCAGCCCATCTCAGTGCAGGCTCCCTGC...ACTCGTCCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR GCA 90 bp | TACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGACGAGTCGACAGCAGCCCTGCTaGAGGCTGCAGGGGTCACAG | + |
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Preference number: 4 (lower is better) Translates to: YRWAAKVVSLCSIRSRTSRQQPC*RLQGSQ Trigger: CTGTGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCG...ACTCGTCCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR GCA 90 bp | TACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGACGAGTAGGTCCTGCAGGTGGTaGGACAGGGAGCAGGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: YRWAAKVVSLCSIRSRTSRSCRW*DREQAG Trigger: GCCAGCCTGCTCCCTGTCGCACCACCTGCAGGACCT...ACTCGTCCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR CCA 90 bp | GGGAAGTACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGATGGGCCTGGTGCAGTaGGGCACACAGGTCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: GKYRWAAKVVSLCSIRSRMGLVQ*GTQVTG Trigger: CCCTGTGACCTGTGTGCCCCACTGCACCAGGCCCAT...CCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTACTTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR CCA 90 bp | GGGAAGTACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGGCTCACAGATGGGCCTaGTGCAGTGGGGCACACAGG | + |
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Preference number: 4 (lower is better) Translates to: GKYRWAAKVVSLCSIRSRAHRWA*CSGAHR Trigger: CCTGTGTGCCCCACTGCACCAGGCCCATCTGTGAGC...CCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTACTTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR CCA 90 bp | TACAGATGGGCTGCAAAAGTGGTGTCTCTCTGCTCCATCAGGAGTAGGACGAGTCCTCCTCCACAGCTCTaGGAGGAGAAGGATCCACAG | + |
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Preference number: 4 (lower is better) Translates to: YRWAAKVVSLCSIRSRTSPPPQL*EEKDPQ Trigger: CTGTGGATCCTTCTCCTCCCAGAGCTGTGGAGGAGG...ACTCGTCCTACTCCTGATGGAGCAGAGAGACACCACTTTTGCAGCCCATCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR CCA 90 bp | GCTGAATATATATATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTGGGGGGGAGGTCCTGCAGGTaGTGCGACAGGGAGCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: AEYIYGELDRPLRLGELGGRSCR*CDREQA Trigger: AGCCTGCTCCCTGTCGCACCACCTGCAGGACCTCCC...CCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATTCAGC 53% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR GCA 90 bp | GCTGAATATATATATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTGGGGTGCAGACCACAGCTGTaGAAGAGGTGGGGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: AEYIYGELDRPLRLGELGCRPQL*KRWGSR Trigger: CCTGCTGCCCCACCTCTTGCACAGCTGTGGTCTGCA...CCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR CCA 90 bp | GAATATATATATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTGGGGAAGCGACACACTGTGGTCTaGCAGGACACTGGGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: EYIYGELDRPLRLGELGKRHTVV*QDTGRQ Trigger: CTGCCGCCCAGTGTCCTGCCAGACCACAGTGTGTCG...CTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| CDS-3UTR GCA 90 bp | AATATATATATGGAGAACTTGATAGGCCTTTACGGTTGGGTGAACTGGGGAAGTCACAGATGGGCCTGGTaGAGTGGGGCACACAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: NIYMENLIGLYGWVNWGSHRWAW*SGAHRS Trigger: TGACCTGTGTGCCCCACTGCACCAGGCCCATCTGTG...ACTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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| 3UTR CAA 72 bp | GAATATATATATGGAGAACTTGATAGGCCTTTACGGTaGGGTGAACTGGGGAAGTACAGATGGGCTGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: EYIYGELDRPLR*GELGKYRWAAK Trigger: TTTTGCAGCCCATCTGTACTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074926.6 |
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