Pregenerated sensors for KRTAP19-9B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057174Ensembl transcript IDs: ENSMUST00000077715.6
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GCGGAAATGTCACAGAAGACAAAAGTCAGAAGCCAACACATCATAATCAGGAGTAGCACCATAGCATGGTaGTACCTTCTTCAGAAAATC | + |
|
Preference number: 2 (lower is better) Translates to: AEMSQKTKVRSQHIIIRSSTIAW*YLLQKI Trigger: GATTTTCTGAAGAAGGTACCACCATGCTATGGTGCT...ACTCCTGATTATGATGTGTTGGCTTCTGACTTTTGTCTTCTGTGACATTTCCGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077715.6 |
||
| CDS-3UTR CCA 90 bp | AACTTTATTTTTGAAATAACGCGGAAATGTCACAGAAGACAAAAGTCAGAAGCCCCCCAAGGCCATAGCTaGAACCATAGCCATATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: NFIFEITRKCHRRQKSEAPQGHS*NHSHIP Trigger: TGGGATATGGCTATGGTTCCAGCTATGGCCTTGGGG...GGCTTCTGACTTTTGTCTTCTGTGACATTTCCGCGTTATTTCAAAAATAAAGTT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000077715.6 |
||
| CDS-3UTR TCA 90 bp | AACTTTATTTTTGAAATAACGCGGAAATGTCACAGAAGACAAAAGTCAGAAGCCCATAGAAAGAGGGACTaGAGTAGCCATAGCCACCAT | + |
|
Preference number: 4 (lower is better) Translates to: NFIFEITRKCHRRQKSEAHRKRD*SSHSHH Trigger: ATGGTGGCTATGGCTACTTCAGTCCCTCTTTCTATG...GGCTTCTGACTTTTGTCTTCTGTGACATTTCCGCGTTATTTCAAAAATAAAGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077715.6 |
||
| CDS TCA 72 bp | ACCCAGAAGACAAATATCCTCCATAGAAAGAGGGACTaGAGTAGCCATAGCCACCATAGCCCCCAAGGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: TQKTNILHRKRD*SSHSHHSPQGH Trigger: ATGGCCTTGGGGGCTATGGTGGCTATGGCTACTTCAGTCCCTCTTTCTATGGAGGATATTTGTCTTCTGGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077715.6 |
||