Pregenerated sensors for KRTAP19-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060469

Ensembl transcript IDs: ENSMUST00000075284.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	TATTGGCAATTGAACATAATCCCACTCTTAGTGCCCAAGCTTAGGATGCAGAGATTTGACGTGTTCAGTTaGCTTAGCACTATCAAAGCT	+
Preference number: 2 (lower is better) Translates to: YWQLNIIPLLVPKLRMQRFDVFS*LSTIKA Trigger: AGCTTTGATAGTGCTAAGCCAACTGAACACGTCAAA...TCTCTGCATCCTAAGCTTGGGCACTAAGAGTGGGATTATGTTCAATTGCCAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075284.4
3UTR-3UTR CCA 90 bp	TGGCAATTGAACATAATCCCACTCTTAGTGCCCAAGCTTAGGATGCAGAGACATACTATCAAAGCTTCATaGCTAGGATTTCTCAGAAAA	+
Preference number: 2 (lower is better) Translates to: WQLNIIPLLVPKLRMQRHTIKAS*LGFLRK Trigger: TTTTCTGAGAAATCCTAGCCATGAAGCTTTGATAGT...ATGTCTCTGCATCCTAAGCTTGGGCACTAAGAGTGGGATTATGTTCAATTGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075284.4
3UTR CCA 72 bp	GGAGTCTTTAAAACTGTAAAATTTGACGTGTTCAGTTaGCTTAGCACTATCAAAGCTTCATGGCTAGGATTT	+
Preference number: 3 (lower is better) Translates to: GVFKTVKFDVFS*LSTIKASWLGF Trigger: AAATCCTAGCCATGAAGCTTTGATAGTGCTAAGCCAACTGAACACGTCAAATTTTACAGTTTTAAAGACTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075284.4
CDS-3UTR TCA 90 bp	AATGGAGTCTTTAAAACTGTAAAATTTGACGTGTTCAGTTGGCTTAGCACTATCATATCCTCCACAGCATaGAGGGCGGCGGCAGCCACA	+
Preference number: 4 (lower is better) Translates to: NGVFKTVKFDVFSWLSTIISSTA*RAAAAT Trigger: TGTGGCTGCCGCCGCCCTTCATGCTGTGGAGGATAT...GATAGTGCTAAGCCAACTGAACACGTCAAATTTTACAGTTTTAAAGACTCCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075284.4
CDS GCA 72 bp	CTCCATAGCCAGAGCCAAAGCCCACCAGTCTGCGGATaGTGTTACATCCACAGCCCGGGCCTCCAAAGCTGC	+
Preference number: 6 (lower is better) Translates to: LHSQSQSPPVCG*CYIHSPGLQSC Trigger: GCAGCTTTGGAGGCCCGGGCTGTGGATGTAACAGCATCCGCAGACTGGTGGGCTTTGGCTCTGGCTATGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075284.4
CDS GCA 72 bp	CAAAGCCTCCATAGCCAGAGCCAAAGCCCACCAGTCTaGGGATGCTGTTACATCCACAGCCCGGGCCTCCAA	+
Preference number: 6 (lower is better) Translates to: QSLHSQSQSPPV*GCCYIHSPGLQ Trigger: TTGGAGGCCCGGGCTGTGGATGTAACAGCATCCGCAGACTGGTGGGCTTTGGCTCTGGCTATGGAGGCTTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075284.4

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