Pregenerated sensors for KRTAP19-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057650Ensembl transcript IDs: ENSMUST00000076186.4
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TATTGGCAATTGAACATAAATGCACTCTTAGTGCCCAAGCTTAGGGTGCAGAGATCTCAGAACAACTACTaGGGGTATCCAATGCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: YWQLNINALLVPKLRVQRSQNNY*GYPMLS Trigger: ACTCAGCATTGGATACCCTCAGTAGTTGTTCTGAGA...TCTCTGCACCCTAAGCTTGGGCACTAAGAGTGCATTTATGTTCAATTGCCAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| 3UTR-3UTR CCA 90 bp | TATTGGCAATTGAACATAAATGCACTCTTAGTGCCCAAGCTTAGGGTGCAGAGAACCACCAAAGCTTCTTaGCTAGGATTTCTCAGAACA | + |
|
Preference number: 2 (lower is better) Translates to: YWQLNINALLVPKLRVQRTTKAS*LGFLRT Trigger: TGTTCTGAGAAATCCTAGCCAAGAAGCTTTGGTGGT...TCTCTGCACCCTAAGCTTGGGCACTAAGAGTGCATTTATGTTCAATTGCCAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| 3UTR CCA 72 bp | GACATGTTCAGTTGGCTTAGTACCACCAAAGCTTCTTaGCTAGGATTTCTCAGAACAACTACTGAGGGTATC | + |
|
Preference number: 3 (lower is better) Translates to: DMFSWLSTTKAS*LGFLRTTTEGI Trigger: GATACCCTCAGTAGTTGTTCTGAGAAATCCTAGCCAAGAAGCTTTGGTGGTACTAAGCCAACTGAACATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| 3UTR CCA 72 bp | GGAGTTTTCATAATTGTAGAATTTGACATGTTCAGTTaGCTTAGTACCACCAAAGCTTCTTGGCTAGGATTT | + |
|
Preference number: 3 (lower is better) Translates to: GVFIIVEFDMFS*LSTTKASWLGF Trigger: AAATCCTAGCCAAGAAGCTTTGGTGGTACTAAGCCAACTGAACATGTCAAATTCTACAATTATGAAAACTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| CDS-3UTR TCA 90 bp | TTTGACATGTTCAGTTGGCTTAGTACCACCAAAGCTTCTTGGCTAGGATTTCTCATATCCTCCACAGCATaGAGAGCGGCGGCAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: FDMFSWLSTTKASWLGFLISSTA*RAAAAT Trigger: TGTGGCTGCCGCCGCTCTTCATGCTGTGGAGGATAT...GAGAAATCCTAGCCAAGAAGCTTTGGTGGTACTAAGCCAACTGAACATGTCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| CDS GCA 90 bp | GTCTGCGGATGCTGTTACATCCACAGCCCAGGCCTCCAAAGCTGCTaGCATAGCCGTAGCCCAGGCCTCCGGAGTAGCCGCTGTAGTAGC | + |
|
Preference number: 5 (lower is better) Translates to: VCGCCYIHSPGLQSC*HSRSPGLRSSRCSS Trigger: GCTACTACAGCGGCTACTCCGGAGGCCTGGGCTACGGCTATGGCAGCAGCTTTGGAGGCCTGGGCTGTGGATGTAACAGCATCCGCAGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| CDS GCA 90 bp | CCAGTCTGCGGATGCTGTTACATCCACAGCCCAGGCCTCCAAAGCTaGTGCCATAGCCGTAGCCCAGGCCTCCGGAGTAGCCGCTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: PVCGCCYIHSPGLQS*CHSRSPGLRSSRCS Trigger: ACTACAGCGGCTACTCCGGAGGCCTGGGCTACGGCTATGGCAGCAGCTTTGGAGGCCTGGGCTGTGGATGTAACAGCATCCGCAGACTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| CDS GCA 72 bp | AGCCTCCATAGCCAGAGCCACAGCCCAGTCTGCGGATaGTGTTACATCCACAGCCCAGGCCTCCAAAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SLHSQSHSPVCG*CYIHSPGLQSC Trigger: GCAGCTTTGGAGGCCTGGGCTGTGGATGTAACAGCATCCGCAGACTGGGCTGTGGCTCTGGCTATGGAGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| CDS GCA 72 bp | ATCCGAAGCCTCCATAGCCAGAGCCACAGCCCAGTCTaGGGATGCTGTTACATCCACAGCCCAGGCCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: IRSLHSQSHSPV*GCCYIHSPGLQ Trigger: TTGGAGGCCTGGGCTGTGGATGTAACAGCATCCGCAGACTGGGCTGTGGCTCTGGCTATGGAGGCTTCGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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| CDS TCA 72 bp | TCAGTAGAAACTGGAGAACCCATATCCTCCACAGCATaGAGAGCGGCGGCAGCCACATCCATAGCCTCTGAA | + |
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Preference number: 6 (lower is better) Translates to: SVETGEPISSTA*RAAAATSIASE Trigger: TTCAGAGGCTATGGATGTGGCTGCCGCCGCTCTTCATGCTGTGGAGGATATGGGTTCTCCAGTTTCTACTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076186.4 |
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