Pregenerated sensors for KRTAP17-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078252

Ensembl transcript IDs: ENSMUST00000105049.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	ACTGGGATGGACCAAGAGGTCCAAAGAGTAAGAGAATGCCTCATAGCTGCGAGGGAGGAGGTCTCCATCTaGAGTGGACTGGACGGAGGC	+
Preference number: 2 (lower is better) Translates to: TGMDQEVQRVRECLIAAREEVSI*SGLDGG Trigger: GCCTCCGTCCAGTCCACTCCAGATGGAGACCTCCTC...CCTCGCAGCTATGAGGCATTCTCTTACTCTTTGGACCTCTTGGTCCATCCCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
3UTR CAA 90 bp	CCTCATTGGAACCCAGCTTTTAATTTCTTGCCAGGAAATGGCTCTTaGGCCCTGAGTGCCTTAGACCCCAGGGCAAGCTCTCCTATCAGA	+
Preference number: 2 (lower is better) Translates to: PHWNPAFNFLPGNGS*ALSALDPRASSPIR Trigger: TCTGATAGGAGAGCTTGCCCTGGGGTCTAAGGCACTCAGGGCCAAAGAGCCATTTCCTGGCAAGAAATTAAAAGCTGGGTTCCAATGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
3UTR-3UTR TCA 90 bp	CAAGAGGTCCAAAGAGTAAGAGAATGCCTCATAGCTGCGAGGCGTGTAACTTCAAAACGAGTCAGGAGATaGGGAGGTCTCCATCTGGAG	+
Preference number: 2 (lower is better) Translates to: QEVQRVRECLIAARRVTSKRVRR*GGLHLE Trigger: CTCCAGATGGAGACCTCCTCATCTCCTGACTCGTTT...TGAAGTTACACGCCTCGCAGCTATGAGGCATTCTCTTACTCTTTGGACCTCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
3UTR-3UTR CCA 90 bp	GAGCAGAAAACTGGGATGGACCAAGAGGTCCAAAGAGTAAGAGAATGCCTCATATTTCTTGCCAGGAAATaGCTCTTTGGCCCTGAGTGC	+
Preference number: 2 (lower is better) Translates to: EQKTGMDQEVQRVRECLIFLARK*LFGPEC Trigger: GCACTCAGGGCCAAAGAGCCATTTCCTGGCAAGAAA...TATGAGGCATTCTCTTACTCTTTGGACCTCTTGGTCCATCCCAGTTTTCTGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
3UTR-3UTR GCA 90 bp	GATGGACCAAGAGGTCCAAAGAGTAAGAGAATGCCTCATAGCTGCGAGGCGTGTCAGCTTTTAATTTCTTaGCAGGAAATGGCTCTTTGG	+
Preference number: 2 (lower is better) Translates to: DGPRGPKSKRMPHSCEACQLLIS*QEMALW Trigger: CCAAAGAGCCATTTCCTGGCAAGAAATTAAAAGCTG...ACACGCCTCGCAGCTATGAGGCATTCTCTTACTCTTTGGACCTCTTGGTCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
3UTR TCA 72 bp	ATGTCGCTGTCTTGGAGGTGCAAACGAGTCAGGAGATaGGGAGGTCTCCATCTGGAGTGGACTGGACGGAGG	+
Preference number: 3 (lower is better) Translates to: MSLSWRCKRVRR*GGLHLEWTGRR Trigger: CCTCCGTCCAGTCCACTCCAGATGGAGACCTCCTCATCTCCTGACTCGTTTGCACCTCCAAGACAGCGACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
3UTR CCA 72 bp	AGTCAGGAGATGAGGAGGTCTCCATCTGGAGTGGACTaGACGGAGGCTGTCCCCAACACTGTCTCAGTTAGA	+
Preference number: 3 (lower is better) Translates to: SQEMRRSPSGVD*TEAVPNTVSVR Trigger: TCTAACTGAGACAGTGTTGGGGACAGCCTCCGTCCAGTCCACTCCAGATGGAGACCTCCTCATCTCCTGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
CDS-3UTR TCA 90 bp	ACGAGTCAGGAGATGAGGAGGTCTCCATCTGGAGTGGACTGGACGGAGGCTGTCCACACAGGTGTGGGCTaGCAGCACACTGGACCACAG	+
Preference number: 4 (lower is better) Translates to: TSQEMRRSPSGVDWTEAVHTGVG*QHTGPQ Trigger: CTGTGGTCCAGTGTGCTGTCAGCCCACACCTGTGTG...GACAGCCTCCGTCCAGTCCACTCCAGATGGAGACCTCCTCATCTCCTGACTCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
CDS-3UTR GCA 90 bp	CATGTCGCTGTCTTGGAGGTGCAAACGAGTCAGGAGATGAGGAGGTCTCCATCTCAGCCGCAGCAGCCCTaGTGGCAGCAACACTCCTCA	+
Preference number: 4 (lower is better) Translates to: HVAVLEVQTSQEMRRSPSQPQQP*WQQHSS Trigger: TGAGGAGTGTTGCTGCCAGCAGGGCTGCTGCGGCTG...AGATGGAGACCTCCTCATCTCCTGACTCGTTTGCACCTCCAAGACAGCGACATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
CDS-3UTR CCA 90 bp	ACGAGTCAGGAGATGAGGAGGTCTCCATCTGGAGTGGACTGGACGGAGGCTGTCTCTCACACACAGGTGTaGGCTGACAGCACACTGGAC	+
Preference number: 4 (lower is better) Translates to: TSQEMRRSPSGVDWTEAVSHTQV*ADSTLD Trigger: GTCCAGTGTGCTGTCAGCCCACACCTGTGTGTGAGA...GACAGCCTCCGTCCAGTCCACTCCAGATGGAGACCTCCTCATCTCCTGACTCGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
CDS-3UTR CCA 90 bp	GAGCAGAAAACTGGGATGGACCAAGAGGTCCAAAGAGTAAGAGAATGCCTCATAGGGCTGACAGCACACTaGACCACAGCACCCGCCGCC	+
Preference number: 4 (lower is better) Translates to: EQKTGMDQEVQRVRECLIGLTAH*TTAPAA Trigger: GGCGGCGGGTGCTGTGGTCCAGTGTGCTGTCAGCCC...TATGAGGCATTCTCTTACTCTTTGGACCTCTTGGTCCATCCCAGTTTTCTGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
CDS-3UTR CCA 90 bp	GATGGACCAAGAGGTCCAAAGAGTAAGAGAATGCCTCATAGCTGCGAGGCGTGTCAGCAGTCCTGTTCCTaGGAGCAGCAATTGAGGCAG	+
Preference number: 4 (lower is better) Translates to: DGPRGPKSKRMPHSCEACQQSCS*EQQLRQ Trigger: CTGCCTCAATTGCTGCTCCCAGGAACAGGACTGCTG...ACACGCCTCGCAGCTATGAGGCATTCTCTTACTCTTTGGACCTCTTGGTCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
CDS-3UTR CCA 90 bp	GAGCAGAAAACTGGGATGGACCAAGAGGTCCAAAGAGTAAGAGAATGCCTCATACCGCAGCAGCCCTGCTaGCAGCAACACTCCTCACAG	+
Preference number: 4 (lower is better) Translates to: EQKTGMDQEVQRVRECLIPQQPC*QQHSSQ Trigger: CTGTGAGGAGTGTTGCTGCCAGCAGGGCTGCTGCGG...TATGAGGCATTCTCTTACTCTTTGGACCTCTTGGTCCATCCCAGTTTTCTGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105049.2
CDS-3UTR CAA 90 bp	ACGAGTCAGGAGATGAGGAGGTCTCCATCTGGAGTGGACTGGACGGAGGCTGTCTCCTGGGAGCAGCAATaGAGGCAGTCTCCCGGGCAG	+
Preference number: 5 (lower is better) Translates to: TSQEMRRSPSGVDWTEAVSWEQQ*RQSPGQ Trigger: CTGCCCGGGAGACTGCCTCAATTGCTGCTCCCAGGA...GACAGCCTCCGTCCAGTCCACTCCAGATGGAGACCTCCTCATCTCCTGACTCGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105049.2