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Pregenerated sensors for KRTAP13-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056350

Ensembl transcript IDs: ENSMUST00000060494.8

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAACCCACCAGCCAATATCTGAGGTTAGAGAGAAAGTGAAGAATTaGCAATCAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGGAAG +
Preference number: 1 (lower is better)
Translates to: ETHQPISEVREKVKN*QSGNERTILPSPRK
Trigger: CTTCCTTGGGCTGGGAAGAATTGTTCTCTCATTCCCTGATTGCCAATTCTTCACTTTCTCTCTAACCTCAGATATTGGCTGGTGGGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
3UTR TCA 90 bp TCTCAAAGGAAACCCACCAGCCAATATCTGAGGTTAGAGAGAAAGTaGAGAATTGGCAATCAGGGAATGAGAGAACAATTCTTCCCAGCC +
Preference number: 1 (lower is better)
Translates to: SQRKPTSQYLRLERK*RIGNQGMREQFFPA
Trigger: GGCTGGGAAGAATTGTTCTCTCATTCCCTGATTGCCAATTCTTCACTTTCTCTCTAACCTCAGATATTGGCTGGTGGGTTTCCTTTGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR GCA 90 bp CAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGGAAGACAACAAAGGCCAGGGCCTGAGAGTGGCAGCTaGTGGATCCAAAGCTCTGAG +
Preference number: 4 (lower is better)
Translates to: QGMREQFFPAQGRQQRPGPESGS*WIQSSE
Trigger: CTCAGAGCTTTGGATCCAGCAGCTGCCACTCTCAGG...CCCTGGCCTTTGTTGTCTTCCTTGGGCTGGGAAGAATTGTTCTCTCATTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR TCA 90 bp CAAGGAAGACAACAAAGGCCAGGGAACCAGGGGAGGATGATAATGGTCAACAAGTGGAAGCAGTTCTGCTaGCAGCCACTGTGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: QGRQQRPGNQGRMIMVNKWKQFC*QPLWRE
Trigger: CTCTCTCCACAGTGGCTGTCAGCAGAACTGCTTCCA...CTTGTTGACCATTATCATCCTCCCCTGGTTCCCTGGCCTTTGTTGTCTTCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR GCA 90 bp AATCAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGGAAGACAACAAAGGCCATGGTTCTGCAGGGACTaGAGACACTGGAGACTCTGG +
Preference number: 4 (lower is better)
Translates to: NQGMREQFFPAQGRQQRPWFCRD*RHWRLW
Trigger: CCAGAGTCTCCAGTGTCTGCAGTCCCTGCAGAACCA...TGGCCTTTGTTGTCTTCCTTGGGCTGGGAAGAATTGTTCTCTCATTCCCTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR GCA 90 bp AGACAACAAAGGCCAGGGAACCAGGGGAGGATGATAATGGTCAACAAGACTGGAAGAATCCAGATCCAGTaGCACAGCTTGGTCTGTAGC +
Preference number: 4 (lower is better)
Translates to: RQQRPGNQGRMIMVNKTGRIQIQ*HSLVCS
Trigger: GCTACAGACCAAGCTGTGGCACTGGATCTGGATTCT...TCCAGTCTTGTTGACCATTATCATCCTCCCCTGGTTCCCTGGCCTTTGTTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR CCA 90 bp GGAAGACAACAAAGGCCAGGGAACCAGGGGAGGATGATAATGGTCAACAAGACTGAGCTGTGTACCACATaGGAAGTCTGGCATCTGATG +
Preference number: 4 (lower is better)
Translates to: GRQQRPGNQGRMIMVNKTELCTT*EVWHLM
Trigger: CATCAGATGCCAGACTTCCCATGTGGTACACAGCTC...AGTCTTGTTGACCATTATCATCCTCCCCTGGTTCCCTGGCCTTTGTTGTCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR CCA 90 bp CAATCAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGGAAGACAACAAAGGCCGAGAGCCAGCATATGTaGTTCTGCAGGGACTGCAGA +
Preference number: 4 (lower is better)
Translates to: QSGNERTILPSPRKTTKAESQHM*FCRDCR
Trigger: TCTGCAGTCCCTGCAGAACCACATATGCTGGCTCTC...GGCCTTTGTTGTCTTCCTTGGGCTGGGAAGAATTGTTCTCTCATTCCCTGATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR CCA 90 bp CAATCAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGGAAGACAACAAAGGCCATAGGGCACATAGGATaGGTGGCAGAATCCAGATCC +
Preference number: 4 (lower is better)
Translates to: QSGNERTILPSPRKTTKAIGHIG*VAESRS
Trigger: GGATCTGGATTCTGCCACCCATCCTATGTGCCCTAT...GGCCTTTGTTGTCTTCCTTGGGCTGGGAAGAATTGTTCTCTCATTCCCTGATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR GCA 90 bp AAGAATTGGCAATCAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGGAAGACACAGCATATGTGGTTCTaGAGGGACTGCAGACACTGG +
Preference number: 4 (lower is better)
Translates to: KNWQSGNERTILPSPRKTQHMWF*RDCRHW
Trigger: CCAGTGTCTGCAGTCCCTGCAGAACCACATATGCTG...TGTCTTCCTTGGGCTGGGAAGAATTGTTCTCTCATTCCCTGATTGCCAATTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR CCA 90 bp AAGAATTGGCAATCAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGGAAGACATCTGGAGTAGGTGACTaGGGTAGGAAGAGCCACAAG +
Preference number: 4 (lower is better)
Translates to: KNWQSGNERTILPSPRKTSGVGD*GRKSHK
Trigger: CTTGTGGCTCTTCCTACCCCAGTCACCTACTCCAGA...TGTCTTCCTTGGGCTGGGAAGAATTGTTCTCTCATTCCCTGATTGCCAATTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR CCA 90 bp GAGAAAGTGAAGAATTGGCAATCAGGGAATGAGAGAACAATTCTTCCCAGCCCAAGAAGAGACCCTTTGTaGTCTAAAGCCACTGGACCC +
Preference number: 4 (lower is better)
Translates to: EKVKNWQSGNERTILPSPRRDPL*SKATGP
Trigger: GGGTCCAGTGGCTTTAGACCACAAAGGGTCTCTTCT...TGGGCTGGGAAGAATTGTTCTCTCATTCCCTGATTGCCAATTCTTCACTTTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS-3UTR CCA 90 bp ATATCTGAGGTTAGAGAGAAAGTGAAGAATTGGCAATCAGGGAATGAGAGAACATCCAGTGCCACAGCTTaGTCTGTAGCAAGGAGACTG +
Preference number: 4 (lower is better)
Translates to: ISEVREKVKNWQSGNERTSSATA*SVARRL
Trigger: CAGTCTCCTTGCTACAGACCAAGCTGTGGCACTGGA...TGTTCTCTCATTCCCTGATTGCCAATTCTTCACTTTCTCTCTAACCTCAGATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS TCA 90 bp AGGGCCGCTGGCAGGAGCTGTGTACCACATGGGAAGTCTGGCATCTaGTGGGCTGGAAGCAGTTCTGCTGACAGCCACTGTGGAGAGAGG +
Preference number: 5 (lower is better)
Translates to: RAAGRSCVPHGKSGI*WAGSSSADSHCGER
Trigger: CCTCTCTCCACAGTGGCTGTCAGCAGAACTGCTTCCAGCCCATCAGATGCCAGACTTCCCATGTGGTACACAGCTCCTGCCAGCGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8
CDS TCA 72 bp GGCAGGAGCTGTGTACCACATGGGAAGTCTGGCATCTaGTGGGCTGGAAGCAGTTCTGCTGACAGCCACTGT +
Preference number: 6 (lower is better)
Translates to: GRSCVPHGKSGI*WAGSSSADSHC
Trigger: ACAGTGGCTGTCAGCAGAACTGCTTCCAGCCCATCAGATGCCAGACTTCCCATGTGGTACACAGCTCCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060494.8