Pregenerated sensors for KRTAP13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050224Ensembl transcript IDs: ENSMUST00000053149.4
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AGACAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGAGCTTCGGGCAGGGGCTaGGCACCACACAGGACCTCT | + |
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Preference number: 4 (lower is better) Translates to: RQFYYRICIQYWHWRLNRASGRG*APHRTS Trigger: AGAGGTCCTGTGTGGTGCCCAGCCCCTGCCCGAAGC...TCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR GCA 90 bp | AGACAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGAGGCAGGGTGTGGAGCTaGTGGGGTAGTAGCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RQFYYRICIQYWHWRLNRGRVWS*WGSSRA Trigger: AGCCCTGCTACTACCCCAGCAGCTCCACACCCTGCC...TCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR GCA 90 bp | CAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGATTATCTCCTGGCAGCCACTaGGCACAGAGGAGCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: QFYYRICIQYWHWRLNRLSPGSH*AQRSSA Trigger: AGCTGAGCTCCTCTGTGCGCAGTGGCTGCCAGGAGA...TAATCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR CCA 90 bp | CAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGATTAAGGGTGTGGAGCTGCTaGGGTAGTAGCAGGGCTTCG | + |
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Preference number: 4 (lower is better) Translates to: QFYYRICIQYWHWRLNRLRVWSC*GSSRAS Trigger: CGAAGCCCTGCTACTACCCCAGCAGCTCCACACCCT...TAATCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR CCA 90 bp | CAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGATTACCAGCATATGTCCCCTaGCAGGGTGTGGAGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: QFYYRICIQYWHWRLNRLPAYVP*QGVELL Trigger: CAGCAGCTCCACACCCTGCCAGGGGACATATGCTGG...TAATCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR CCA 90 bp | CAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGATTATCAATGCAGCTCTCCTaGCAGCCACTGCGCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: QFYYRICIQYWHWRLNRLSMQLS*QPLRTE Trigger: CTCTGTGCGCAGTGGCTGCCAGGAGAGCTGCATTGA...TAATCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR CCA 90 bp | CAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGATTAACCACACAGGACCTCTaGCAGCTAATGGGCTCAATG | + |
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Preference number: 4 (lower is better) Translates to: QFYYRICIQYWHWRLNRLTTQDL*QLMGSM Trigger: CATTGAGCCCATTAGCTGCCAGAGGTCCTGTGTGGT...TAATCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR TCA 90 bp | AGACAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGACAGACAACAGATCTGTaGTATCTGGTAGGAAAGCTA | + |
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Preference number: 4 (lower is better) Translates to: RQFYYRICIQYWHWRLNRQTTDL*YLVGKL Trigger: TAGCTTTCCTACCAGATATCACAGATCTGTTGTCTG...TCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR TCA 90 bp | CAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGATTAATCCCTAGAAGGGAATaGAAGTGGAGTACAGACAAC | + |
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Preference number: 4 (lower is better) Translates to: QFYYRICIQYWHWRLNRLIPRRE*KWSTDN Trigger: GTTGTCTGTACTCCACTTTCATTCCCTTCTAGGGAT...TAATCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS-3UTR CCA 90 bp | AGACAATTTTACTACAGAATCTGCATTCAGTATTGGCACTGGAGACTCAACAGAGCGAGATGTGTAGAGTaGCTGATAACAAGAATAGAA | + |
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Preference number: 4 (lower is better) Translates to: RQFYYRICIQYWHWRLNRARCVE*LITRIE Trigger: TTCTATTCTTGTTATCAGCCACTCTACACATCTCGC...TCTGTTGAGTCTCCAGTGCCAATACTGAATGCAGATTCTGTAGTAAAATTGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS CCA 90 bp | TCTCCTGACAGCGGATGGGCTCAATGCAGGTCTCCTGGCAGCGGATaGGCTCAATGCAGCTCTCCTGGCAGCGGATGGGCTCAATGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SPDSGWAQCRSPGSG*AQCSSPGSGWAQCS Trigger: GCTGCATTGAGCCCATCCGCTGCCAGGAGAGCTGCATTGAGCCCATCCGCTGCCAGGAGACCTGCATTGAGCCCATCCGCTGTCAGGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS TCA 90 bp | ACCACACAGGACCTCTGGCAGCTAATGGGCTCAATGCAGGTCTCCTaGCAGCGGATGGGCTCAATGCAGGTCTCCTGGCAGCGGATGGGC | + |
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Preference number: 5 (lower is better) Translates to: TTQDLWQLMGSMQVS*QRMGSMQVSWQRMG Trigger: GCCCATCCGCTGCCAGGAGACCTGCATTGAGCCCATCCGCTGTCAGGAGACCTGCATTGAGCCCATTAGCTGCCAGAGGTCCTGTGTGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS CCA 72 bp | CTCTCCTGGCAGCGGATGGGCTCAATGCAGCTCTCCTaGCAGCCACTGCGCACAGAGGAGCTCAGCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: LSWQRMGSMQLS*QPLRTEELSWQ Trigger: CTGCCAGCTGAGCTCCTCTGTGCGCAGTGGCTGCCAGGAGAGCTGCATTGAGCCCATCCGCTGCCAGGAGAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS CCA 72 bp | AGCGGATGGGCTCAATGCAGCTCTCCTGGCAGCGGATaGGCTCAATGCAGCTCTCCTGGCAGCCACTGCGCA | + |
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Preference number: 6 (lower is better) Translates to: SGWAQCSSPGSG*AQCSSPGSHCA Trigger: TGCGCAGTGGCTGCCAGGAGAGCTGCATTGAGCCCATCCGCTGCCAGGAGAGCTGCATTGAGCCCATCCGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS CCA 72 bp | AGCGGATGGGCTCAATGCAGGTCTCCTGGCAGCGGATaGGCTCAATGCAGCTCTCCTGGCAGCGGATGGGCT | + |
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Preference number: 6 (lower is better) Translates to: SGWAQCRSPGSG*AQCSSPGSGWA Trigger: AGCCCATCCGCTGCCAGGAGAGCTGCATTGAGCCCATCCGCTGCCAGGAGACCTGCATTGAGCCCATCCGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS GCA 72 bp | GCTCAATGCAGGTCTCCTGACAGCGGATGGGCTCAATaGAGGTCTCCTGGCAGCGGATGGGCTCAATGCAGC | + |
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Preference number: 6 (lower is better) Translates to: AQCRSPDSGWAQ*RSPGSGWAQCS Trigger: GCTGCATTGAGCCCATCCGCTGCCAGGAGACCTGCATTGAGCCCATCCGCTGTCAGGAGACCTGCATTGAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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| CDS TCA 72 bp | GACCTCTGGCAGCTAATGGGCTCAATGCAGGTCTCCTaGCAGCGGATGGGCTCAATGCAGGTCTCCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: DLWQLMGSMQVS*QRMGSMQVSWQ Trigger: CTGCCAGGAGACCTGCATTGAGCCCATCCGCTGTCAGGAGACCTGCATTGAGCCCATTAGCTGCCAGAGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053149.4 |
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