Pregenerated sensors for KRTAP12-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069583Ensembl transcript IDs: ENSMUST00000092370.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCACCTGGTGCGAACTCTAAACCTGAGGTCAAGTTGAACAGGTTGTaGGACAGCAAGTGTGTCCCATCTGTCAGGATCTGGTTTGGAGAG | + |
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Preference number: 1 (lower is better) Translates to: PPGANSKPEVKLNRL*DSKCVPSVRIWFGE Trigger: CTCTCCAAACCAGATCCTGACAGATGGGACACACTTGCTGTCTCACAACCTGTTCAACTTGACCTCAGGTTTAGAGTTCGCACCAGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| 3UTR-3UTR TCA 90 bp | AGGGTTAGAGAAGGTCCCTGCAGCCAGGACATCCATGAGAGATCAGCAGATACAAACCTGAGGTCAAGTTaGACAGGTTGTGAGACAGCA | + |
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Preference number: 2 (lower is better) Translates to: RVREGPCSQDIHERSADTNLRSS*TGCETA Trigger: TGCTGTCTCACAACCTGTTCAACTTGACCTCAGGTT...TGTATCTGCTGATCTCTCATGGATGTCCTGGCTGCAGGGACCTTCTCTAACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| 3UTR TCA 72 bp | GCGAACTCTAAACCTGAGGTCAAGTTGAACAGGTTGTaGGACAGCAAGTGTGTCCCATCTGTCAGGATCTGG | + |
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Preference number: 3 (lower is better) Translates to: ANSKPEVKLNRL*DSKCVPSVRIW Trigger: CCAGATCCTGACAGATGGGACACACTTGCTGTCTCACAACCTGTTCAACTTGACCTCAGGTTTAGAGTTCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| 3UTR GCA 72 bp | CTGGTTTATTTAGTACACAGGGTTAGAGAAGGTCCCTaGAGCCAGGACATCCATGAGAGATCAGCAGATACA | + |
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Preference number: 3 (lower is better) Translates to: LVYLVHRVREGP*SQDIHERSADT Trigger: TGTATCTGCTGATCTCTCATGGATGTCCTGGCTGCAGGGACCTTCTCTAACCCTGTGTACTAAATAAACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CCA 90 bp | GGTTGTGAGACAGCAAGTGTGTCCCATCTGTCAGGATCTGGTTTGGAGAGCCTGGTGGGGCAGGAGGGCTaGCAGCATCCAGATGACTGG | + |
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Preference number: 4 (lower is better) Translates to: GCETASVSHLSGSGLESLVGQEG*QHPDDW Trigger: CCAGTCATCTGGATGCTGCCAGCCCTCCTGCCCCAC...CAGGCTCTCCAAACCAGATCCTGACAGATGGGACACACTTGCTGTCTCACAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CCA 90 bp | GGTTGTGAGACAGCAAGTGTGTCCCATCTGTCAGGATCTGGTTTGGAGAGCCTGGAGCCATGCACACAGTaGGCCCACAGCTCACAGGCA | + |
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Preference number: 4 (lower is better) Translates to: GCETASVSHLSGSGLESLEPCTQ*AHSSQA Trigger: TGCCTGTGAGCTGTGGGCCCACTGTGTGCATGGCTC...CAGGCTCTCCAAACCAGATCCTGACAGATGGGACACACTTGCTGTCTCACAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR TCA 90 bp | TTAGAGAAGGTCCCTGCAGCCAGGACATCCATGAGAGATCAGCAGATACAGATCAGGCCTGCAGCATGCTaGCTGGCAGGAGCTGGACAC | + |
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Preference number: 4 (lower is better) Translates to: LEKVPAARTSMRDQQIQIRPAAC*LAGAGH Trigger: GTGTCCAGCTCCTGCCAGTCAGCATGCTGCAGGCCT...GATCTGTATCTGCTGATCTCTCATGGATGTCCTGGCTGCAGGGACCTTCTCTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CCA 90 bp | ACAGGGTTAGAGAAGGTCCCTGCAGCCAGGACATCCATGAGAGATCAGCAGATAACACAGCAGGATGGCTaGCACCCTGAAGAGCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: TGLEKVPAARTSMRDQQITQQDG*HPEEQL Trigger: CAGCTGCTCTTCAGGGTGCCAGCCATCCTGCTGTGT...TATCTGCTGATCTCTCATGGATGTCCTGGCTGCAGGGACCTTCTCTAACCCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CCA 90 bp | ACAGGGTTAGAGAAGGTCCCTGCAGCCAGGACATCCATGAGAGATCAGCAGATACAGCATCCAGATGACTaGCAGGAGGAGGTCACACAG | + |
|
Preference number: 4 (lower is better) Translates to: TGLEKVPAARTSMRDQQIQHPDD*QEEVTQ Trigger: CTGTGTGACCTCCTCCTGCCAGTCATCTGGATGCTG...TATCTGCTGATCTCTCATGGATGTCCTGGCTGCAGGGACCTTCTCTAACCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CCA 90 bp | GGTTGTGAGACAGCAAGTGTGTCCCATCTGTCAGGATCTGGTTTGGAGAGCCTGACAAAGCAGGATGCCTaGCAGGGACTAGACACACAA | + |
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Preference number: 4 (lower is better) Translates to: GCETASVSHLSGSGLESLTKQDA*QGLDTQ Trigger: TTGTGTGTCTAGTCCCTGCCAGGCATCCTGCTTTGT...CAGGCTCTCCAAACCAGATCCTGACAGATGGGACACACTTGCTGTCTCACAACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CCA 90 bp | CAGGTTGTGAGACAGCAAGTGTGTCCCATCTGTCAGGATCTGGTTTGGAGAGCCACACAGCAGGCTACCTaGTATCTAACAGGAATGCAT | + |
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Preference number: 4 (lower is better) Translates to: QVVRQQVCPICQDLVWRATQQAT*YLTGMH Trigger: ATGCATTCCTGTTAGATACCAGGTAGCCTGCTGTGT...GGCTCTCCAAACCAGATCCTGACAGATGGGACACACTTGCTGTCTCACAACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CAA 90 bp | GGTTGTGAGACAGCAAGTGTGTCCCATCTGTCAGGATCTGGTTTGGAGAGCCTGCTACAGGTGACAGGCTaGCAGACCAGAGTGGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: GCETASVSHLSGSGLESLLQVTG*QTRVGQ Trigger: CTGCCCCACTCTGGTCTGCAAGCCTGTCACCTGTAG...CAGGCTCTCCAAACCAGATCCTGACAGATGGGACACACTTGCTGTCTCACAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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| CDS-3UTR CAA 90 bp | ACAGGGTTAGAGAAGGTCCCTGCAGCCAGGACATCCATGAGAGATCAGCAGATACAACAGCAAGAGGGGTaGCTACAGGTGACAGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: TGLEKVPAARTSMRDQQIQQQEG*LQVTGL Trigger: CAAGCCTGTCACCTGTAGCAACCCCTCTTGCTGTTG...TATCTGCTGATCTCTCATGGATGTCCTGGCTGCAGGGACCTTCTCTAACCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092370.3 |
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