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Pregenerated sensors for KRTAP10-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069582

Ensembl transcript IDs: ENSMUST00000092369.4

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GGCCTCCTAGGAAGCAGGAGGAGAGATCAAGTCACAAGGGACAAGTTGGGAGGCTCAGACTGGAAAAGCTaGGAGGAGCCCCAGGACCTA +
Preference number: 2 (lower is better)
Translates to: GLLGSRRRDQVTRDKLGGSDWKS*EEPQDL
Trigger: TAGGTCCTGGGGCTCCTCTCAGCTTTTCCAGTCTGA...GCCTCCCAACTTGTCCCTTGTGACTTGATCTCTCCTCCTGCTTCCTAGGAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR CAA 90 bp GGCCTCCTAGGAAGCAGGAGGAGAGATCAAGTCACAAGGGACAAGTaGGGAGGCTACATCTTGGGGGTGGATTTTCTATCCCAGGTCAGA +
Preference number: 2 (lower is better)
Translates to: GLLGSRRRDQVTRDK*GGYILGVDFLSQVR
Trigger: TCTGACCTGGGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTGTCCCTTGTGACTTGATCTCTCCTCCTGCTTCCTAGGAGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR-3UTR CCA 90 bp GCAGGCCTCCTAGGAAGCAGGAGGAGAGATCAAGTCACAAGGGACAAGTTGGGAGCTACATCTTGGGGGTaGATTTTCTATCCCAGGTCA +
Preference number: 2 (lower is better)
Translates to: AGLLGSRRRDQVTRDKLGATSWG*IFYPRS
Trigger: TGACCTGGGATAGAAAATCCACCCCCAAGATGTAGC...TCCCAACTTGTCCCTTGTGACTTGATCTCTCCTCCTGCTTCCTAGGAGGCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR CCA 72 bp GAAGCAGGAGGAGAGATCAAGTCACAAGGGACAAGTTaGGAGGCTACATCTTGGGGGTGGATTTTCTATCCC +
Preference number: 3 (lower is better)
Translates to: EAGGEIKSQGTS*EATSWGWIFYP
Trigger: GGGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTGTCCCTTGTGACTTGATCTCTCCTCCTGCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR CCA 72 bp TCACAAGGGACAAGTTGGGAGGCTACATCTTGGGGGTaGATTTTCTATCCCAGGTCAGAGTCAGACTGGAAA +
Preference number: 3 (lower is better)
Translates to: SQGTSWEATSWG*IFYPRSESDWK
Trigger: TTTCCAGTCTGACTCTGACCTGGGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTGTCCCTTGTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR CCA 72 bp ATCAAGTCACAAGGGACAAGTTGGGAGGCTACATCTTaGGGGTGGATTTTCTATCCCAGGTCAGAGTCAGAC +
Preference number: 3 (lower is better)
Translates to: IKSQGTSWEATS*GWIFYPRSESD
Trigger: GTCTGACTCTGACCTGGGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTGTCCCTTGTGACTTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS-3UTR CCA 90 bp TCCCAGGTCAGAGTCAGACTGGAAAAGCTGAGAGGAGCCCCAGGACCTAAGTCACACAGCAGGCCTGTCTaGAGCAGGCAGGGCGGCACA +
Preference number: 4 (lower is better)
Translates to: SQVRVRLEKLRGAPGPKSHSRPV*SRQGGT
Trigger: TGTGCCGCCCTGCCTGCTCCAGACAGGCCTGCTGTG...TGACTTAGGTCCTGGGGCTCCTCTCAGCTTTTCCAGTCTGACTCTGACCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS-3UTR GCA 90 bp CTGCTGACAGGCTGGCGTTGGGGGCAAGCAACCAGAAGAAAGGGACAGGAAAGGTGCAGCAGACAGGTGTaGAGCAGACAGGAGTGCAGC +
Preference number: 4 (lower is better)
Translates to: LLTGWRWGQATRRKGQERCSRQV*SRQECS
Trigger: GCTGCACTCCTGTCTGCTGCACACCTGTCTGCTGCA...CCTTTCCTGTCCCTTTCTTCTGGTTGCTTGCCCCCAACGCCAGCCTGTCAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS-3UTR CCA 90 bp AAGGGACAGGAAAGGCAGAGTCCCAGAGGATCAGCAGGCCTCCTAGGAAGCAGGGTGCAGCAGGAAGATTaGCAGCAGGGGCTGGACACA +
Preference number: 4 (lower is better)
Translates to: KGQERQSPRGSAGLLGSRVQQED*QQGLDT
Trigger: TGTGTCCAGCCCCTGCTGCCAATCTTCCTGCTGCAC...CCTGCTTCCTAGGAGGCCTGCTGATCCTCTGGGACTCTGCCTTTCCTGTCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS-3UTR CCA 90 bp GCAGGCCTCCTAGGAAGCAGGAGGAGAGATCAAGTCACAAGGGACAAGTTGGGAGGCAGGTCTGCACACTaGGCGACACAGCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: AGLLGSRRRDQVTRDKLGGRSAH*ATQQGQ
Trigger: CTGTCCCTGCTGTGTCGCCCAGTGTGCAGACCTGCC...TCCCAACTTGTCCCTTGTGACTTGATCTCTCCTCCTGCTTCCTAGGAGGCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS-3UTR CCA 90 bp CAAGTTGGGAGGCTACATCTTGGGGGTGGATTTTCTATCCCAGGTCAGAGTCAGTGGGGGCACAGCAACTaGGGACACAGCAGCTTGGCT +
Preference number: 4 (lower is better)
Translates to: QVGRLHLGGGFSIPGQSQWGHSN*GHSSLA
Trigger: AGCCAAGCTGCTGTGTCCCCAGTTGCTGTGCCCCCA...CTGACTCTGACCTGGGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR CAA 72 bp CGTTTATTGAAGCCATGGGCTGCTGACAGGCTGGCGTaGGGGGCAAGCAACCAGAAGAAAGGGACAGGAAAG +
Preference number: 4 (lower is better)
Translates to: RLLKPWAADRLA*GASNQKKGTGK
Trigger: CTTTCCTGTCCCTTTCTTCTGGTTGCTTGCCCCCAACGCCAGCCTGTCAGCAGCCCATGGCTTCAATAAACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR CAA 72 bp GGAAGCAGGAGGAGAGATCAAGTCACAAGGGACAAGTaGGGAGGCTACATCTTGGGGGTGGATTTTCTATCC +
Preference number: 4 (lower is better)
Translates to: GSRRRDQVTRDK*GGYILGVDFLS
Trigger: GGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTGTCCCTTGTGACTTGATCTCTCCTCCTGCTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
3UTR CAA 72 bp GATCAAGTCACAAGGGACAAGTTGGGAGGCTACATCTaGGGGGTGGATTTTCTATCCCAGGTCAGAGTCAGA +
Preference number: 4 (lower is better)
Translates to: DQVTRDKLGGYI*GVDFLSQVRVR
Trigger: TCTGACTCTGACCTGGGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTGTCCCTTGTGACTTGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS CCA 90 bp GGCCACAGCAGCTGGGCTGGCAGGAGGAGGCACAGCAGGAGGAGGTaGGCACACAGCAGGCAGGTCTGCACACTGGGCGACACAGCAGGG +
Preference number: 5 (lower is better)
Translates to: GHSSWAGRRRHSRRR*AHSRQVCTLGDTAG
Trigger: CCCTGCTGTGTCGCCCAGTGTGCAGACCTGCCTGCTGTGTGCCCACCTCCTCCTGCTGTGCCTCCTCCTGCCAGCCCAGCTGCTGTGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS-3UTR CAA 90 bp CAAGTTGGGAGGCTACATCTTGGGGGTGGATTTTCTATCCCAGGTCAGAGTCAGACCTGCCAGGAGGAGTaGGTGCGAGCGTCAGAACAG +
Preference number: 5 (lower is better)
Translates to: QVGRLHLGGGFSIPGQSQTCQEE*VRASEQ
Trigger: CTGTTCTGACGCTCGCACCAACTCCTCCTGGCAGGT...CTGACTCTGACCTGGGATAGAAAATCCACCCCCAAGATGTAGCCTCCCAACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS CCA 72 bp AGCTGGGCTGGCAGGAGGAGGCACAGCAGGAGGAGGTaGGCACACAGCAGGCAGGTCTGCACACTGGGCGAC +
Preference number: 6 (lower is better)
Translates to: SWAGRRRHSRRR*AHSRQVCTLGD
Trigger: GTCGCCCAGTGTGCAGACCTGCCTGCTGTGTGCCCACCTCCTCCTGCTGTGCCTCCTCCTGCCAGCCCAGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4
CDS CAA 90 bp GGTCTGCACACTGGGCGACACAGCAGGGACAGGCTGGAGCAGGGCTaGCAGCACACAGGAGCACAGCAGGAGGGCTGGCAGCAGGAGGAG +
Preference number: 6 (lower is better)
Translates to: GLHTGRHSRDRLEQG*QHTGAQQEGWQQEE
Trigger: CTCCTCCTGCTGCCAGCCCTCCTGCTGTGCTCCTGTGTGCTGCAAGCCCTGCTCCAGCCTGTCCCTGCTGTGTCGCCCAGTGTGCAGACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092369.4