Pregenerated sensors for KRTAP10-10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000112223

Ensembl transcript IDs: ENSMUST00000218843.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	ATGCAGCTTAAGGACAGGGTCCCAGAGGAAGTAACTCATACCACGTaGAGCCTTTTCCCATGGGTGGCCAGATATTCTGGTGAGGCCTCA	+
Preference number: 1 (lower is better) Translates to: MQLKDRVPEEVTHTT*SLFPWVARYSGEAS Trigger: TGAGGCCTCACCAGAATATCTGGCCACCCATGGGAAAAGGCTTCACGTGGTATGAGTTACTTCCTCTGGGACCCTGTCCTTAAGCTGCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR TCA 90 bp	CGGCCTAACTGTGGCAACTGTCTAGTAGCCCAGAAAGTGTCTCCCTaGAGTCTGTTGGGTAGGGACTACTTCAGAAGAGCTGGTCACACA	+
Preference number: 1 (lower is better) Translates to: RPNCGNCLVAQKVSP*SLLGRDYFRRAGHT Trigger: TGTGTGACCAGCTCTTCTGAAGTAGTCCCTACCCAACAGACTTCAGGGAGACACTTTCTGGGCTACTAGACAGTTGCCACAGTTAGGCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR GCA 90 bp	TTTTCCCATGGGTGGCCAGATATTCTGGTGAGGCCTCAGAAGGTTTaGAGGACTCACAGCTTGTCAGCTGATCACAGGATAGTAGCCACC	+
Preference number: 1 (lower is better) Translates to: FSHGWPDILVRPQKV*RTHSLSADHRIVAT Trigger: GGTGGCTACTATCCTGTGATCAGCTGACAAGCTGTGAGTCCTGCAAACCTTCTGAGGCCTCACCAGAATATCTGGCCACCCATGGGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR CCA 90 bp	TTCAGAAGAGCTGGTCACACACAGAGAGGAGAACCAAATAGCCAGTaGAAAGGCAACATTGGATGCAGCTTAAGGACAGGGTCCCAGAGG	+
Preference number: 1 (lower is better) Translates to: FRRAGHTQRGEPNSQ*KGNIGCSLRTGSQR Trigger: CCTCTGGGACCCTGTCCTTAAGCTGCATCCAATGTTGCCTTTCCACTGGCTATTTGGTTCTCCTCTCTGTGTGTGACCAGCTCTTCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR CCA 90 bp	GCCTCAGCAGAGCCTGGCCGGCCTAACTGTGGCAACTGTCTAGTAGCCCAGAAAGTGGAAAGGCAACATTaGATGCAGCTTAAGGACAGG	+
Preference number: 2 (lower is better) Translates to: ASAEPGRPNCGNCLVAQKVERQH*MQLKDR Trigger: CCTGTCCTTAAGCTGCATCCAATGTTGCCTTTCCAC...TTTCTGGGCTACTAGACAGTTGCCACAGTTAGGCCGGCCAGGCTCTGCTGAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR CCA 90 bp	GCCTCAGCAGAGCCTGGCCGGCCTAACTGTGGCAACTGTCTAGTAGCCCAGAAACTCCCTGAAGTCTGTTaGGTAGGGACTACTTCAGAA	+
Preference number: 2 (lower is better) Translates to: ASAEPGRPNCGNCLVAQKLPEVC*VGTTSE Trigger: TTCTGAAGTAGTCCCTACCCAACAGACTTCAGGGAG...TTTCTGGGCTACTAGACAGTTGCCACAGTTAGGCCGGCCAGGCTCTGCTGAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR TCA 90 bp	GTGAGGCCTCAGAAGGTTTGCAGGACTCACAGCTTGTCAGCTGATCACAGGATATGGGAAACTCGGAGCTaGGCAGGGAAACATGGGTAT	+
Preference number: 2 (lower is better) Translates to: VRPQKVCRTHSLSADHRIWETRS*AGKHGY Trigger: ATACCCATGTTTCCCTGCTCAGCTCCGAGTTTCCCA...TATCCTGTGATCAGCTGACAAGCTGTGAGTCCTGCAAACCTTCTGAGGCCTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR TCA 90 bp	GTGAGGCCTCAGAAGGTTTGCAGGACTCACAGCTTGTCAGCTGATCACAGGATAAGCCACCATCAGACCTaGCAAAAAGGAGTGTGGGAA	+
Preference number: 2 (lower is better) Translates to: VRPQKVCRTHSLSADHRISHHQT*QKGVWE Trigger: TTCCCACACTCCTTTTTGTCAGGTCTGATGGTGGCT...TATCCTGTGATCAGCTGACAAGCTGTGAGTCCTGCAAACCTTCTGAGGCCTCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR TCA 90 bp	AAGTGTCTCCCTGAAGTCTGTTGGGTAGGGACTACTTCAGAAGAGCTGGTCACAGGCCAGATATTCTGGTaGGGCCTCAGAAGGTTTGCA	+
Preference number: 2 (lower is better) Translates to: KCLPEVCWVGTTSEELVTGQIFW*GLRRFA Trigger: TGCAAACCTTCTGAGGCCTCACCAGAATATCTGGCC...TGTGACCAGCTCTTCTGAAGTAGTCCCTACCCAACAGACTTCAGGGAGACACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR CCA 90 bp	GACTACTTCAGAAGAGCTGGTCACACACAGAGAGGAGAACCAAATAGCCAGTGGGCCTTTTCCCATGGGTaGCCAGATATTCTGGTGAGG	+
Preference number: 2 (lower is better) Translates to: DYFRRAGHTQRGEPNSQWAFSHG*PDILVR Trigger: CCTCACCAGAATATCTGGCCACCCATGGGAAAAGGC...CCACTGGCTATTTGGTTCTCCTCTCTGTGTGTGACCAGCTCTTCTGAAGTAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR CCA 90 bp	GTGAGGCCTCAGAAGGTTTGCAGGACTCACAGCTTGTCAGCTGATCACAGGATATATCAGACCTGCACCTaGGGAATTCTAAAGCATGGG	+
Preference number: 2 (lower is better) Translates to: VRPQKVCRTHSLSADHRIYQTCT*GILKHG Trigger: CCCATGCTTTAGAATTCCCCAGGTGCAGGTCTGATA...TATCCTGTGATCAGCTGACAAGCTGTGAGTCCTGCAAACCTTCTGAGGCCTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR-3UTR CAA 90 bp	GTAGGGACTACTTCAGAAGAGCTGGTCACACACAGAGAGGAGAACCAAATAGCCGAGGCCTCAGAAGGTTaGCAGGACTCACAGCTTGTC	+
Preference number: 3 (lower is better) Translates to: VGTTSEELVTHREENQIAEASEG*QDSQLV Trigger: GACAAGCTGTGAGTCCTGCAAACCTTCTGAGGCCTC...GGCTATTTGGTTCTCCTCTCTGTGTGTGACCAGCTCTTCTGAAGTAGTCCCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
3UTR TCA 72 bp	AAGGACAGGGTCCCAGAGGAAGTAACTCATACCACGTaGAGCCTTTTCCCATGGGTGGCCAGATATTCTGGT	+
Preference number: 3 (lower is better) Translates to: KDRVPEEVTHTT*SLFPWVARYSG Trigger: ACCAGAATATCTGGCCACCCATGGGAAAAGGCTTCACGTGGTATGAGTTACTTCCTCTGGGACCCTGTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
CDS-3UTR CCA 90 bp	GCTGAGCAGGGAAACATGGGTATGAGGCTGAACCCAGTTGTGGGAACAGGCCCGCACAGCAGGCCTGTTTaGAGCAGGCAGGGCGGCACA	+
Preference number: 4 (lower is better) Translates to: AEQGNMGMRLNPVVGTGPHSRPV*SRQGGT Trigger: TGTGCCGCCCTGCCTGCTCCAAACAGGCCTGCTGTG...CGGGCCTGTTCCCACAACTGGGTTCAGCCTCATACCCATGTTTCCCTGCTCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
CDS-3UTR GCA 90 bp	GCAGGGTGTCAGGCCTCAGCAGAGCCTGGCCGGCCTAACTGTGGCAACTGTCTATGCAGCAGACAGGTGTaGAACAAACAGGTACACAGC	+
Preference number: 4 (lower is better) Translates to: AGCQASAEPGRPNCGNCLCSRQV*NKQVHS Trigger: GCTGTGTACCTGTTTGTTGCACACCTGTCTGCTGCA...TAGACAGTTGCCACAGTTAGGCCGGCCAGGCTCTGCTGAGGCCTGACACCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
CDS-3UTR GCA 90 bp	GAGTGTGGGAAACTCGGAGCTGAGCAGGGAAACATGGGTATGAGGCTGAACCCATGCAGCAGACAGGTGTaGAGCAGACAGGTGTGCAAC	+
Preference number: 4 (lower is better) Translates to: ECGKLGAEQGNMGMRLNPCSRQV*SRQVCN Trigger: GTTGCACACCTGTCTGCTGCACACCTGTCTGCTGCA...TGGGTTCAGCCTCATACCCATGTTTCCCTGCTCAGCTCCGAGTTTCCCACACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
CDS-3UTR GCA 90 bp	GTAGGGACTACTTCAGAAGAGCTGGTCACACACAGAGAGGAGAACCAAATAGCCGCCAGGAGGAGTTGGTaGGAGCATCAGAGCAAACAG	+
Preference number: 4 (lower is better) Translates to: VGTTSEELVTHREENQIAARRSW*EHQSKQ Trigger: CTGTTTGCTCTGATGCTCGCACCAACTCCTCCTGGC...GGCTATTTGGTTCTCCTCTCTGTGTGTGACCAGCTCTTCTGAAGTAGTCCCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
CDS CCA 90 bp	CACAGCAGGCAGGTCTGCACACAGGGCGACACAGCAGGGACAGGCTaGAGCAGGGCTTGCAGCACACAGGAGCACAGCAGGAGGGCTGGC	+
Preference number: 5 (lower is better) Translates to: HSRQVCTQGDTAGTG*SRACSTQEHSRRAG Trigger: GCCAGCCCTCCTGCTGTGCTCCTGTGTGCTGCAAGCCCTGCTCCAGCCTGTCCCTGCTGTGTCGCCCTGTGTGCAGACCTGCCTGCTGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
CDS-3UTR CAA 90 bp	ATGAGGGAAGTCACAGAGGAGGAGACCCAAGGTCAACTTAGCTCTGAGGTCTGCCCACAGCAGGCCTGTTaGGAGCAGGCAGGGCGGCAC	+
Preference number: 5 (lower is better) Translates to: MREVTEEETQGQLSSEVCPQQAC*EQAGRH Trigger: GTGCCGCCCTGCCTGCTCCAAACAGGCCTGCTGTGG...GCAGACCTCAGAGCTAAGTTGACCTTGGGTCTCCTCCTCTGTGACTTCCCTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2
CDS-3UTR CAA 90 bp	GTAGGGACTACTTCAGAAGAGCTGGTCACACACAGAGAGGAGAACCAAATAGCCACCTGCCAGGAGGAGTaGGTGCGAGCATCAGAGCAA	+
Preference number: 5 (lower is better) Translates to: VGTTSEELVTHREENQIATCQEE*VRASEQ Trigger: TTGCTCTGATGCTCGCACCAACTCCTCCTGGCAGGT...GGCTATTTGGTTCTCCTCTCTGTGTGTGACCAGCTCTTCTGAAGTAGTCCCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218843.2