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Pregenerated sensors for KRTAP1-5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047253

Ensembl transcript IDs: ENSMUST00000054532.5

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCCAGAAGTTGGTTAAGGAACTTCCATTTTTCTCTGATGACATCTaGAGAATGTCTCTCAGCTGTGGGCTGGTGTCTTTGATGTTAGAA +
Preference number: 1 (lower is better)
Translates to: SQKLVKELPFFSDDI*RMSLSCGLVSLMLE
Trigger: TTCTAACATCAAAGACACCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTTCCTTAACCAACTTCTGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR CCA 90 bp AAGACAACGAAGCAAAGGTTGGAGAACTTGTTACTGCTCCAGAGTTaGTTAAGGAGATGCACAATTCAAGAATACCATGATCTGGGCAAT +
Preference number: 1 (lower is better)
Translates to: KTTKQRLENLLLLQS*LRRCTIQEYHDLGN
Trigger: ATTGCCCAGATCATGGTATTCTTGAATTGTGCATCTCCTTAACCAACTCTGGAGCAGTAACAAGTTCTCCAACCTTTGCTTCGTTGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR GCA 90 bp ATTCTTCAAGATTTTGACAATTTTCAATTCTGCAAGAGTTTCAGATaGAATACATCCAGAACAATTTGGTGGTCAGCCTGTGGGTTCTCA +
Preference number: 1 (lower is better)
Translates to: ILQDFDNFQFCKSFR*NTSRTIWWSACGFS
Trigger: TGAGAACCCACAGGCTGACCACCAAATTGTTCTGGATGTATTGCATCTGAAACTCTTGCAGAATTGAAAATTGTCAAAATCTTGAAGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR GCA 90 bp TTTGCCCAGGATATAAGCTTTATTAAGAAACATCAGAAGTCACAATaGTACAGATATAATGGAATGGCCAGCAGGCAAACGAATTATGAT +
Preference number: 1 (lower is better)
Translates to: FAQDISFIKKHQKSQ*YRYNGMASRQTNYD
Trigger: ATCATAATTCGTTTGCCTGCTGGCCATTCCATTATATCTGTAGCATTGTGACTTCTGATGTTTCTTAATAAAGCTTATATCCTGGGCAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR-3UTR CCA 90 bp AACTTCCATTTTTCTCTGATGACATCTGAAGAATGTCTCTCAGCTGTGGGCTGGACATCCAGAACAATTTaGTGGTCAGCCTGTGGGTTC +
Preference number: 2 (lower is better)
Translates to: NFHFSLMTSEECLSAVGWTSRTI*WSACGF
Trigger: GAACCCACAGGCTGACCACCAAATTGTTCTGGATGT...CCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR-3UTR CCA 90 bp AACTTCCATTTTTCTCTGATGACATCTGAAGAATGTCTCTCAGCTGTGGGCTGGCAACGAAGCAAAGGTTaGAGAACTTGTTACTGCTCC +
Preference number: 2 (lower is better)
Translates to: NFHFSLMTSEECLSAVGWQRSKG*RTCYCS
Trigger: GGAGCAGTAACAAGTTCTCCAACCTTTGCTTCGTTG...CCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR-3UTR CCA 90 bp AACTTCCATTTTTCTCTGATGACATCTGAAGAATGTCTCTCAGCTGTGGGCTGGTTACTGCTCCAGAGTTaGTTAAGGAGATGCACAATT +
Preference number: 2 (lower is better)
Translates to: NFHFSLMTSEECLSAVGWLLLQS*LRRCTI
Trigger: AATTGTGCATCTCCTTAACCAACTCTGGAGCAGTAA...CCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR-3UTR GCA 90 bp AACTTCCATTTTTCTCTGATGACATCTGAAGAATGTCTCTCAGCTGTGGGCTGGAGTTGGTTAAGGAGATaGACAATTCAAGAATACCAT +
Preference number: 2 (lower is better)
Translates to: NFHFSLMTSEECLSAVGWSWLRR*TIQEYH
Trigger: ATGGTATTCTTGAATTGTGCATCTCCTTAACCAACT...CCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR-3UTR CCA 90 bp CAATGCTACAGATATAATGGAATGGCCAGCAGGCAAACGAATTATGATCCAAAAACAGAAGATAAAAGTTaGTCACCAAGCAGGAAGAAT +
Preference number: 2 (lower is better)
Translates to: QCYRYNGMASRQTNYDPKTEDKS*SPSRKN
Trigger: ATTCTTCCTGCTTGGTGACCAACTTTTATCTTCTGT...TTTTGGATCATAATTCGTTTGCCTGCTGGCCATTCCATTATATCTGTAGCATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR-3UTR CAA 90 bp CCAGAACAATTTGGTGGTCAGCCTGTGGGTTCTCAGCATTTCTGGATCCACTGTCAAAGGTTGGAGAACTaGTTACTGCTCCAGAGTTGG +
Preference number: 3 (lower is better)
Translates to: PEQFGGQPVGSQHFWIHCQRLEN*LLLQSW
Trigger: CCAACTCTGGAGCAGTAACAAGTTCTCCAACCTTTG...ACAGTGGATCCAGAAATGCTGAGAACCCACAGGCTGACCACCAAATTGTTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR-3UTR CAA 90 bp AAGGAAAGGATCCAGTGGAAAAGTGTAGAATGGTCTGGCCTATTTCTTAGCAGCACAACGAAGCAAAGGTaGGAGAACTTGTTACTGCTC +
Preference number: 3 (lower is better)
Translates to: KERIQWKSVEWSGLFLSSTTKQR*ENLLLL
Trigger: GAGCAGTAACAAGTTCTCCAACCTTTGCTTCGTTGT...GCTGCTAAGAAATAGGCCAGACCATTCTACACTTTTCCACTGGATCCTTTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR CCA 72 bp AAGAGTTTCAGATGCAATACATCCAGAACAATTTGGTaGTCAGCCTGTGGGTTCTCAGCATTTCTGGATCCA +
Preference number: 3 (lower is better)
Translates to: KSFRCNTSRTIW*SACGFSAFLDP
Trigger: TGGATCCAGAAATGCTGAGAACCCACAGGCTGACCACCAAATTGTTCTGGATGTATTGCATCTGAAACTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR CCA 72 bp TGCAAGAGTTTCAGATGCAATACATCCAGAACAATTTaGTGGTCAGCCTGTGGGTTCTCAGCATTTCTGGAT +
Preference number: 3 (lower is better)
Translates to: CKSFRCNTSRTI*WSACGFSAFLD
Trigger: ATCCAGAAATGCTGAGAACCCACAGGCTGACCACCAAATTGTTCTGGATGTATTGCATCTGAAACTCTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR TCA 72 bp TTGGTTAAGGAACTTCCATTTTTCTCTGATGACATCTaGAGAATGTCTCTCAGCTGTGGGCTGGTGTCTTTG +
Preference number: 3 (lower is better)
Translates to: LVKELPFFSDDI*RMSLSCGLVSL
Trigger: CAAAGACACCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTTCCTTAACCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR GCA 72 bp GAGAACTTGTTACTGCTCCAGAGTTGGTTAAGGAGATaGACAATTCAAGAATACCATGATCTGGGCAATCAA +
Preference number: 3 (lower is better)
Translates to: ENLLLLQSWLRR*TIQEYHDLGNQ
Trigger: TTGATTGCCCAGATCATGGTATTCTTGAATTGTGCATCTCCTTAACCAACTCTGGAGCAGTAACAAGTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR CCA 72 bp AAGCAAAGGTTGGAGAACTTGTTACTGCTCCAGAGTTaGTTAAGGAGATGCACAATTCAAGAATACCATGAT +
Preference number: 3 (lower is better)
Translates to: KQRLENLLLLQS*LRRCTIQEYHD
Trigger: ATCATGGTATTCTTGAATTGTGCATCTCCTTAACCAACTCTGGAGCAGTAACAAGTTCTCCAACCTTTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR GCA 72 bp GATTTTGACAATTTTCAATTCTGCAAGAGTTTCAGATaGAATACATCCAGAACAATTTGGTGGTCAGCCTGT +
Preference number: 3 (lower is better)
Translates to: DFDNFQFCKSFR*NTSRTIWWSAC
Trigger: ACAGGCTGACCACCAAATTGTTCTGGATGTATTGCATCTGAAACTCTTGCAGAATTGAAAATTGTCAAAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
CDS-3UTR GCA 90 bp CCAGAACAATTTGGTGGTCAGCCTGTGGGTTCTCAGCATTTCTGGATCCACTGTAGCTGGAGCCACAGGTaGCACCAGTGGAGCAAGTGG +
Preference number: 4 (lower is better)
Translates to: PEQFGGQPVGSQHFWIHCSWSHR*HQWSKW
Trigger: CCACTTGCTCCACTGGTGGCACCTGTGGCTCCAGCT...ACAGTGGATCCAGAAATGCTGAGAACCCACAGGCTGACCACCAAATTGTTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
CDS-3UTR CCA 90 bp AAGACAACGAAGCAAAGGTTGGAGAACTTGTTACTGCTCCAGAGTTGGTTAAGGCACAGGTGCCACCAGTaGAGCAAGTGGGAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: KTTKQRLENLLLLQSWLRHRCHQ*SKWESH
Trigger: GTGGCTTTCCCACTTGCTCCACTGGTGGCACCTGTG...CCTTAACCAACTCTGGAGCAGTAACAAGTTCTCCAACCTTTGCTTCGTTGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
CDS-3UTR GCA 90 bp AAGACAACGAAGCAAAGGTTGGAGAACTTGTTACTGCTCCAGAGTTGGTTAAGGCAATTCCACCCCCAATaGCATAGCCTGTCCCACAGC +
Preference number: 4 (lower is better)
Translates to: KTTKQRLENLLLLQSWLRQFHPQ*HSLSHS
Trigger: GCTGTGGGACAGGCTATGGCATTGGGGGTGGAATTG...CCTTAACCAACTCTGGAGCAGTAACAAGTTCTCCAACCTTTGCTTCGTTGTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
CDS-3UTR CCA 90 bp AACTTCCATTTTTCTCTGATGACATCTGAAGAATGTCTCTCAGCTGTGGGCTGGTTGGCTGGAAGCAGCTaGTCTCACAACAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: NFHFSLMTSEECLSAVGWLAGSS*SHNSWA
Trigger: AGCCCAGCTGTTGTGAGACCAGCTGCTTCCAGCCAA...CCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
CDS-3UTR CCA 90 bp TTCTTAGCAGCCAGAAGTTGGTTAAGGAACTTCCATTTTTCTCTGATGACATCTCCAAAGCCACCCTCCTaGCCACAGCCAATTCCACCC +
Preference number: 4 (lower is better)
Translates to: FLAARSWLRNFHFSLMTSPKPPS*PQPIPP
Trigger: GGGTGGAATTGGCTGTGGCCAGGAGGGTGGCTTTGG...AGATGTCATCAGAGAAAAATGGAAGTTCCTTAACCAACTTCTGGCTGCTAAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR CAA 72 bp CTGCAAGAGTTTCAGATGCAATACATCCAGAACAATTaGGTGGTCAGCCTGTGGGTTCTCAGCATTTCTGGA +
Preference number: 4 (lower is better)
Translates to: LQEFQMQYIQNN*VVSLWVLSISG
Trigger: TCCAGAAATGCTGAGAACCCACAGGCTGACCACCAAATTGTTCTGGATGTATTGCATCTGAAACTCTTGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5
3UTR CAA 72 bp GTAGAATGGTCTGGCCTATTTCTTAGCAGCCAGAAGTaGGTTAAGGAACTTCCATTTTTCTCTGATGACATC +
Preference number: 4 (lower is better)
Translates to: VEWSGLFLSSQK*VKELPFFSDDI
Trigger: GATGTCATCAGAGAAAAATGGAAGTTCCTTAACCAACTTCTGGCTGCTAAGAAATAGGCCAGACCATTCTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054532.5