Pregenerated sensors for KRTAP1-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078131

Ensembl transcript IDs: ENSMUST00000104930.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	TCTTCGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAGCCTTGGAAAATAAAGGCCAAGTATTTGTaGCCCAAACACAAGCCATAT	+
Preference number: 2 (lower is better) Translates to: SSCRRIFHGLDSTKPWKIKAKYL*PKHKPY Trigger: ATATGGCTTGTGTTTGGGGCACAAATACTTGGCCTT...TATTTTCCAAGGCTTGGTGCTGTCAAGGCCATGGAAGATTCTTCTACACGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
3UTR-3UTR CCA 90 bp	AAGAATGAAAACTATCTTCGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAAATTCAAGATCCTTTaGGAATCAGCAACCTGGGTC	+
Preference number: 2 (lower is better) Translates to: KNENYLRVEESSMALTAPKFKIL*ESATWV Trigger: GACCCAGGTTGCTGATTCCCAAAGGATCTTGAATTT...TGGTGCTGTCAAGGCCATGGAAGATTCTTCTACACGAAGATAGTTTTCATTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
CDS-3UTR CCA 90 bp	TATCTTCGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAGCCTTGGAAAACCACTGCCACCCTCCTaGCCACTGCCAGTTCCACAG	+
Preference number: 4 (lower is better) Translates to: YLRVEESSMALTAPSLGKPLPPS*PLPVPQ Trigger: CTGTGGAACTGGCAGTGGCCAGGAGGGTGGCAGTGG...TTTTCCAAGGCTTGGTGCTGTCAAGGCCATGGAAGATTCTTCTACACGAAGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
CDS-3UTR GCA 90 bp	CTATCTTCGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAGCCTTGGAAAAGCTGGAGCCACAGGTaGCACCAGTGGAACATGTGG	+
Preference number: 4 (lower is better) Translates to: LSSCRRIFHGLDSTKPWKSWSHR*HQWNMW Trigger: CCACATGTTCCACTGGTGGCACCTGTGGCTCCAGCT...TTTCCAAGGCTTGGTGCTGTCAAGGCCATGGAAGATTCTTCTACACGAAGATAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
CDS-3UTR GCA 90 bp	AAGGCCAAGTATTTGTGCCCCAAACACAAGCCATATCAAAATTCAAGATCCTTTAGCTCACGGCTCCACTaGCACCCTCCTGGCCACTGC	+
Preference number: 4 (lower is better) Translates to: KAKYLCPKHKPYQNSRSFSSRLH*HPPGHC Trigger: GCAGTGGCCAGGAGGGTGGCAGTGGAGCCGTGAGCT...AAAGGATCTTGAATTTTGATATGGCTTGTGTTTGGGGCACAAATACTTGGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
CDS-3UTR CCA 90 bp	TATCTTCGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAGCCTTGGAAAATGGCAACAGCTGGTCTaGGAGCAGCAAGGTTGGCAG	+
Preference number: 4 (lower is better) Translates to: YLRVEESSMALTAPSLGKWQQLV*EQQGWQ Trigger: CTGCCAACCTTGCTGCTCCCAGACCAGCTGTTGCCA...TTTTCCAAGGCTTGGTGCTGTCAAGGCCATGGAAGATTCTTCTACACGAAGATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
CDS-3UTR CCA 90 bp	TATCTTCGTGTAGAAGAATCTTCCATGGCCTTGACAGCACCAAGCCTTGGAAAACACAGGTGCCACCAGTaGAACATGTGGGAAAGCCAC	+
Preference number: 4 (lower is better) Translates to: YLRVEESSMALTAPSLGKHRCHQ*NMWESH Trigger: GTGGCTTTCCCACATGTTCCACTGGTGGCACCTGTG...TTTTCCAAGGCTTGGTGCTGTCAAGGCCATGGAAGATTCTTCTACACGAAGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
CDS CCA 90 bp	TGGCCACTGCCAGTTCCACAGCAGCTGGGCTGGCAGCAGCTGGGCTaGCAACAGCTGGTCTGGGAGCAGCAAGGTTGGCAGCAACTGGAT	+
Preference number: 5 (lower is better) Translates to: WPLPVPQQLGWQQLG*QQLVWEQQGWQQLD Trigger: ATCCAGTTGCTGCCAACCTTGCTGCTCCCAGACCAGCTGTTGCCAGCCCAGCTGCTGCCAGCCCAGCTGCTGTGGAACTGGCAGTGGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104930.2
CDS CCA 72 bp	CTAGGCTGGCAGCAGCTGGGCTGGCAGCAGCTGGGCTaGCAGCAGCTGGAGCCACAGGTGCCACCAGTGGAA	+
Preference number: 6 (lower is better) Translates to: LGWQQLGWQQLG*QQLEPQVPPVE Trigger: TTCCACTGGTGGCACCTGTGGCTCCAGCTGCTGCCAGCCCAGCTGCTGCCAGCCCAGCTGCTGCCAGCCTAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104930.2