Pregenerated sensors for KRT88 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063971Ensembl transcript IDs: ENSMUST00000023781.9
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AGGGAGAAGAGGGCCAGCTCTGTGGGCAAGGGAATCTaGGACAAGAGGACCAAGTCTTTGGGCAGAAGCGCC | + |
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Preference number: 3 (lower is better) Translates to: REKRASSVGKGI*DKRTKSLGRSA Trigger: GGCGCTTCTGCCCAAAGACTTGGTCCTCTTGTCTCAGATTCCCTTGCCCACAGAGCTGGCCCTCTTCTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| 3UTR CCA 72 bp | GGGCAAAAGGGGGAAGGGAGAAGAGGGCCAGCTCTGTaGGCAAGGGAATCTGAGACAAGAGGACCAAGTCTT | + |
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Preference number: 3 (lower is better) Translates to: GQKGEGRRGPAL*ARESETRGPSL Trigger: AAGACTTGGTCCTCTTGTCTCAGATTCCCTTGCCCACAGAGCTGGCCCTCTTCTCCCTTCCCCCTTTTGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| 3UTR GCA 72 bp | AAGAGAGAGAGAATAGAGCCAGTCAGAGGGGCAGAATaGAAGGTTCAGGTAAGCCACAGGCCATGTCTACAA | + |
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Preference number: 3 (lower is better) Translates to: KRERIEPVRGAE*KVQVSHRPCLQ Trigger: TTGTAGACATGGCCTGTGGCTTACCTGAACCTTGCATTCTGCCCCTCTGACTGGCTCTATTCTCTCTCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| 3UTR TCA 72 bp | TTAGCCACCACAGAATGTTTTATTAAAGGGCAAGCCTaGAAAAGAGAGAGAGAGAAAGAGAGAGAGAATAGA | + |
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Preference number: 3 (lower is better) Translates to: LATTECFIKGQA*KREREKERENR Trigger: TCTATTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCAGGCTTGCCCTTTAATAAAACATTCTGTGGTGGCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR GCA 90 bp | GGGGAAGGGAGAAGAGGGCCAGCTCTGTGGGCAAGGGAATCTGAGACAAGAGGAGGGAGCCACACTCCCTaGCCCAAGTCCCAGACCAAG | + |
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Preference number: 4 (lower is better) Translates to: GEGRRGPALWARESETRGGSHTP*PKSQTK Trigger: CTTGGTCTGGGACTTGGGGCAGGGAGTGTGGCTCCC...TCCTCTTGTCTCAGATTCCCTTGCCCACAGAGCTGGCCCTCTTCTCCCTTCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR TCA 90 bp | TCTGAGACAAGAGGACCAAGTCTTTGGGCAGAAGCGCCAGTTTCTAGTCTTCTCTCAGGCCACAGGAACTaGCTCCGGGTGCCCTTAGGG | + |
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Preference number: 4 (lower is better) Translates to: SETRGPSLWAEAPVSSLLSGHRN*LRVPLG Trigger: CCCTAAGGGCACCCGGAGTCAGTTCCTGTGGCCTGA...GAGAAGACTAGAAACTGGCGCTTCTGCCCAAAGACTTGGTCCTCTTGTCTCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR GCA 90 bp | AGAATAGAGCCAGTCAGAGGGGCAGAATGCAAGGTTCAGGTAAGCCACAGGCCAAGGGCCTCCTTGCTGTaGCTAGGGGTCTGCACACAT | + |
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Preference number: 4 (lower is better) Translates to: RIEPVRGAECKVQVSHRPRASLL*LGVCTH Trigger: ATGTGTGCAGACCCCTAGGCACAGCAAGGAGGCCCT...TGGCCTGTGGCTTACCTGAACCTTGCATTCTGCCCCTCTGACTGGCTCTATTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR GCA 90 bp | CAAGGGAATCTGAGACAAGAGGACCAAGTCTTTGGGCAGAAGCGCCAGTTTCTACCCAGACCAAGCCTCTaGTCCTCACCCTCCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: QGNLRQEDQVFGQKRQFLPRPSL*SSPSSS Trigger: GCTGCTGGAGGGTGAGGAGCAGAGGCTTGGTCTGGG...TAGAAACTGGCGCTTCTGCCCAAAGACTTGGTCCTCTTGTCTCAGATTCCCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR CCA 90 bp | AGGGGGAAGGGAGAAGAGGGCCAGCTCTGTGGGCAAGGGAATCTGAGACAAGAGTCCATCTTCAGCTGCTaGATAGCCTGGTTGAGCCTA | + |
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Preference number: 4 (lower is better) Translates to: RGKGEEGQLCGQGNLRQESIFSC*IAWLSL Trigger: TAGGCTCAACCAGGCTATCCAGCAGCTGAAGATGGA...CTCTTGTCTCAGATTCCCTTGCCCACAGAGCTGGCCCTCTTCTCCCTTCCCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR CCA 90 bp | GGGCAAAAGGGGGAAGGGAGAAGAGGGCCAGCTCTGTGGGCAAGGGAATCTGAGCACATTTCTGCACAGTaGCCTTCATCTTCTCACACA | + |
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Preference number: 4 (lower is better) Translates to: GQKGEGRRGPALWARESEHISAQ*PSSSHT Trigger: TGTGTGAGAAGATGAAGGCCACTGTGCAGAAATGTG...CTCAGATTCCCTTGCCCACAGAGCTGGCCCTCTTCTCCCTTCCCCCTTTTGCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR GCA 90 bp | AGTCAGAGGGGCAGAATGCAAGGTTCAGGTAAGCCACAGGCCATGTCTACAAGAGTCTGCACACATTTCTaGACAGTGGCCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: SQRGRMQGSGKPQAMSTRVCTHF*TVAFIF Trigger: GAAGATGAAGGCCACTGTGCAGAAATGTGTGCAGAC...TCTTGTAGACATGGCCTGTGGCTTACCTGAACCTTGCATTCTGCCCCTCTGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR CCA 90 bp | CAGAATGTTTTATTAAAGGGCAAGCCTGAAAAAGAGAGAGAGAGAAAGAGAGAGAGCGCAGCCACCACTTaGGGCGCTCATGTTCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: QNVLLKGKPEKERERKRESAATT*GAHVQA Trigger: GGCCTGAACATGAGCGCCCCAAGTGGTGGCTGCGCT...CTCTCTCTTTCTCTCTCTCTCTTTTTCAGGCTTGCCCTTTAATAAAACATTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS-3UTR CCA 90 bp | AAGGTTCAGGTAAGCCACAGGCCATGTCTACAAGATGACACACCAGAGTCCCGTATGGCCTCCAAGTCTTaGCTTTTCTGTAGTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: KVQVSHRPCLQDDTPESRMASKS*LFCSSQ Trigger: TTGTGAACTACAGAAAAGCCAAGACTTGGAGGCCAT...ACGGGACTCTGGTGTGTCATCTTGTAGACATGGCCTGTGGCTTACCTGAACCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS GCA 90 bp | GGAGGACCTGTCTCCAGTGACGTCACCGCCGGGAGCCACACTCCCTaGCCCAAGTCCCAGACCAAGCCTCTGCTCCTCACCCTCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: GGPVSSDVTAGSHTP*PKSQTKPLLLTLQQ Trigger: CTGCTGGAGGGTGAGGAGCAGAGGCTTGGTCTGGGACTTGGGGCAGGGAGTGTGGCTCCCGGCGGTGACGTCACTGGAGACAGGTCCTCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS GCA 90 bp | CACGGGAGCCAAGGCAGCCAAAGCCTCCAACACAGCCCGCAGAGCTaGAGAGAGCGCAGCCACCACTTGGGGCGCTCATGTTCAGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: HGSQGSQSLQHSPQS*RERSHHLGRSCSGH Trigger: GTGGCCTGAACATGAGCGCCCCAAGTGGTGGCTGCGCTCTCTGCAGCTCTGCGGGCTGTGTTGGAGGCTTTGGCTGCCTTGGCTCCCGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS CCA 90 bp | GCCTCCAACACAGCCCGCAGAGCTGCAGAGAGCGCAGCCACCACTTaGGGCGCTCATGTTCAGGCCACAGGAACTGACTCCGGGTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: ASNTARRAAESAATT*GAHVQATGTDSGCP Trigger: AGGGCACCCGGAGTCAGTTCCTGTGGCCTGAACATGAGCGCCCCAAGTGGTGGCTGCGCTCTCTGCAGCTCTGCGGGCTGTGTTGGAGGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS CCA 90 bp | CCCTTAGCGCTGCCTGAGGCCGCATCCGGCATGGCCTCCAAGTCTTaGCTTTTCTGTAGTTCACAAGGCTCCATCTTCAGCTGCTGGATA | + |
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Preference number: 5 (lower is better) Translates to: PLALPEAASGMASKS*LFCSSQGSIFSCWI Trigger: TATCCAGCAGCTGAAGATGGAGCCTTGTGAACTACAGAAAAGCCAAGACTTGGAGGCCATGCCGGATGCGGCCTCAGGCAGCGCTAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS GCA 90 bp | AGCTGCTGGATAGCCTGGTTGAGCCTATTCAGGGCCTCCTTGCTGTaGCTAGGGGTCTGCACACATTTCTGCACAGTGGCCTTCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: SCWIAWLSLFRASLL*LGVCTHFCTVAFIF Trigger: GAAGATGAAGGCCACTGTGCAGAAATGTGTGCAGACCCCTAGGCACAGCAAGGAGGCCCTGAATAGGCTCAACCAGGCTATCCAGCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS GCA 90 bp | TCCAAGTCTTGGCTTTTCTGTAGTTCACAAGGCTCCATCTTCAGCTaGTGGATAGCCTGGTTGAGCCTATTCAGGGCCTCCTTGCTGTGC | + |
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Preference number: 5 (lower is better) Translates to: SKSWLFCSSQGSIFS*WIAWLSLFRASLLC Trigger: GCACAGCAAGGAGGCCCTGAATAGGCTCAACCAGGCTATCCAGCAGCTGAAGATGGAGCCTTGTGAACTACAGAAAAGCCAAGACTTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS CCA 90 bp | AAGTCTTGGCTTTTCTGTAGTTCACAAGGCTCCATCTTCAGCTGCTaGATAGCCTGGTTGAGCCTATTCAGGGCCTCCTTGCTGTGCCTA | + |
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Preference number: 5 (lower is better) Translates to: KSWLFCSSQGSIFSC*IAWLSLFRASLLCL Trigger: TAGGCACAGCAAGGAGGCCCTGAATAGGCTCAACCAGGCTATCCAGCAGCTGAAGATGGAGCCTTGTGAACTACAGAAAAGCCAAGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS CCA 72 bp | ACAGCCCGCAGAGCTGCAGAGAGCGCAGCCACCACTTaGGGCGCTCATGTTCAGGCCACAGGAACTGACTCC | + |
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Preference number: 6 (lower is better) Translates to: TARRAAESAATT*GAHVQATGTDS Trigger: GGAGTCAGTTCCTGTGGCCTGAACATGAGCGCCCCAAGTGGTGGCTGCGCTCTCTGCAGCTCTGCGGGCTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS TCA 72 bp | CACCACTTGGGGCGCTCATGTTCAGGCCACAGGAACTaGCTCCGGGTGCCCTTAGGGAGGACCTGTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: HHLGRSCSGHRN*LRVPLGRTCLQ Trigger: CTGGAGACAGGTCCTCCCTAAGGGCACCCGGAGTCAGTTCCTGTGGCCTGAACATGAGCGCCCCAAGTGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS GCA 72 bp | ATAGCCTGGTTGAGCCTATTCAGGGCCTCCTTGCTGTaGCTAGGGGTCTGCACACATTTCTGCACAGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: IAWLSLFRASLL*LGVCTHFCTVA Trigger: GGCCACTGTGCAGAAATGTGTGCAGACCCCTAGGCACAGCAAGGAGGCCCTGAATAGGCTCAACCAGGCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS CAA 90 bp | ATCTTCAGCTGCTGGATAGCCTGGTTGAGCCTATTCAGGGCCTCCTaGCTGTGCCTAGGGGTCTGCACACATTTCTGCACAGTGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: IFSCWIAWLSLFRAS*LCLGVCTHFCTVAF Trigger: GAAGGCCACTGTGCAGAAATGTGTGCAGACCCCTAGGCACAGCAAGGAGGCCCTGAATAGGCTCAACCAGGCTATCCAGCAGCTGAAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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| CDS CCA 72 bp | CTTTTCTGTAGTTCACAAGGCTCCATCTTCAGCTGCTaGATAGCCTGGTTGAGCCTATTCAGGGCCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: LFCSSQGSIFSC*IAWLSLFRASL Trigger: CAAGGAGGCCCTGAATAGGCTCAACCAGGCTATCCAGCAGCTGAAGATGGAGCCTTGTGAACTACAGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023781.9 |
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