Pregenerated sensors for KRT86 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067614Ensembl transcript IDs: ENSMUST00000088049.5
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAAGCAAGAACTCTAGGAACAAGTTGCTAGGGAAAGCTACAGATTaGAATAAAGGCGCCGAGGCCACTGTCCCGCTGTGCTGTCCCTTC | + |
|
Preference number: 1 (lower is better) Translates to: ESKNSRNKLLGKATD*NKGAEATVPLCCPF Trigger: GAAGGGACAGCACAGCGGGACAGTGGCCTCGGCGCCTTTATTTCAATCTGTAGCTTTCCCTAGCAACTTGTTCCTAGAGTTCTTGCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR-3UTR GCA 90 bp | AGCCCCTCGTTTGGGGGAGCTGCTGCCAGGCAGACCCGGAAGAAGATGCTCTGGGGGCAGGGTAGCCCGTaGCAGTGGCTTGCAGCATTG | + |
|
Preference number: 2 (lower is better) Translates to: SPSFGGAAARQTRKKMLWGQGSP*QWLAAL Trigger: CAATGCTGCAAGCCACTGGCACGGGCTACCCTGCCC...CCAGAGCATCTTCTTCCGGGTCTGCCTGGCAGCAGCTCCCCCAAACGAGGGGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR-3UTR GCA 90 bp | GGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAAGAGCCACTGTCCCGCTGTaGTGTCCCTTCGGGCAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: GKVRQRGSWGSGSSKILRATVPL*CPFGQG Trigger: ACCCTGCCCGAAGGGACAGCACAGCGGGACAGTGGC...TCTTAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACTTTACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR-3UTR TCA 90 bp | AGGACCCGGGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGAGGGAAAGCTACAGATTaGAATAAAGGCGCCGAGGCC | + |
|
Preference number: 2 (lower is better) Translates to: RTRVKSDKEDPGAADPPRGKATD*NKGAEA Trigger: GGCCTCGGCGCCTTTATTTCAATCTGTAGCTTTCCC...TCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACTTTACCCGGGTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR TCA 72 bp | AACGCAAAGAGAGACAAAGCCCAAGGAACAGGCAGCTaGGCCCCTCGTTTGGGGGAGCTGCTGCCAGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: NAKRDKAQGTGS*APRLGELLPGR Trigger: TCTGCCTGGCAGCAGCTCCCCCAAACGAGGGGCTCAGCTGCCTGTTCCTTGGGCTTTGTCTCTCTTTGCGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR CCA 72 bp | GGAGCTGCTGCCAGGCAGACCCGGAAGAAGATGCTCTaGGTCACGTGGTTTCTAGCGGAGTGTCAGGAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: GAAARQTRKKML*VTWFLAECQES Trigger: GCTTTCCTGACACTCCGCTAGAAACCACGTGACCCAGAGCATCTTCTTCCGGGTCTGCCTGGCAGCAGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR CCA 72 bp | GCCAGGCAGACCCGGAAGAAGATGCTCTGGGTCACGTaGTTTCTAGCGGAGTGTCAGGAAAGCAGGCAACCA | + |
|
Preference number: 3 (lower is better) Translates to: ARQTRKKMLWVT*FLAECQESRQP Trigger: TGGTTGCCTGCTTTCCTGACACTCCGCTAGAAACCACGTGACCCAGAGCATCTTCTTCCGGGTCTGCCTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR TCA 72 bp | AACTCTAGGAACAAGTTGCTAGGGAAAGCTACAGATTaGAATAAAGGCGCCGAGGCCACTGTCCCGCTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: NSRNKLLGKATD*NKGAEATVPLC Trigger: GCACAGCGGGACAGTGGCCTCGGCGCCTTTATTTCAATCTGTAGCTTTCCCTAGCAACTTGTTCCTAGAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR TCA 90 bp | GCTGAGCCCCTCGTTTGGGGGAGCTGCTGCCAGGCAGACCCGGAAGAAGATGCTTTCTGTTCAGCTCATTaGTCTCCTCTCTGGTGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: AEPLVWGSCCQADPEEDAFCSAH*SPLWCG Trigger: GCCGCACCAGAGAGGAGATCAATGAGCTGAACAGAA...AGCATCTTCTTCCGGGTCTGCCTGGCAGCAGCTCCCCCAAACGAGGGGCTCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR GCA 90 bp | AGGACCCGGGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGACCCTCACACAACCTCTaGTCCTCGCCCTCCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RTRVKSDKEDPGAADPPRPSHNL*SSPSSR Trigger: CCTGCTGGAGGGCGAGGAGCAGAGGTTGTGTGAGGG...TCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACTTTACCCGGGTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CCA 90 bp | AGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAAGACCAATGAATCCAGCAAGGGGGCGCAGGCATTaGGGGTGCCCACCACCACGT | + |
|
Preference number: 4 (lower is better) Translates to: RGSWGSGSSKILRPMNPARGRRH*GCPPPR Trigger: ACGTGGTGGTGGGCACCCCCAATGCCTGCGCCCCCT...TGCTGGATTCATTGGTCTTAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR GCA 90 bp | CCGGGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTACGCCACCGCGGGAGCTaGTCACACACACATTCACGG | + |
|
Preference number: 4 (lower is better) Translates to: PGKVRQRGSWGSGSSKILRHRGS*SHTHSR Trigger: CCGTGAATGTGTGTGTGAGCAGCTCCCGCGGTGGCG...TAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACTTTACCCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CCA 90 bp | GCTGAGCCCCTCGTTTGGGGGAGCTGCTGCCAGGCAGACCCGGAAGAAGATGCTTCAGCAGTCAGCCTCTaGATCATTCTGTTCAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: AEPLVWGSCCQADPEEDASAVSL*IILFSS Trigger: TGAGCTGAACAGAATGATCCAGAGGCTGACTGCTGA...AGCATCTTCTTCCGGGTCTGCCTGGCAGCAGCTCCCCCAAACGAGGGGCTCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR GCA 90 bp | GTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAAGACCAATGCCCTCCATGGACTCCTaGGCATGGTTGAGCTCGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VRQRGSWGSGSSKILRPMPSMDS*AWLSSA Trigger: AGCCGAGCTCAACCATGCGCAGGAGTCCATGGAGGG...CATTGGTCTTAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CCA 90 bp | CCGGGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAAGGAAGTCGGTCTCCTaGGTCAGTGCCTCTGCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: PGKVRQRGSWGSGSSKILRKSVS*VSASAL Trigger: CAACGCAGAGGCACTGACCCAGGAGACCGACTTCCT...TAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACTTTACCCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CCA 90 bp | CAAAAGCGTGCTAAGGACCCGGGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCCGGCAGCCTCCAGCTTaGTGTTCTGGCACTTGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: QKRAKDPGKVRQRGSWGSRQPPA*CSGTWH Trigger: ATGCCAAGTGCCAGAACACCAAGCTGGAGGCTGCCG...GCTGCCCCAGGATCCTCTTTGTCTGACTTTACCCGGGTCCTTAGCACGCTTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR GCA 90 bp | AGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAAGACCAATAGGGCAGCCTCTCCCTaGTGCTCAGATTGGGTCACG | + |
|
Preference number: 4 (lower is better) Translates to: SQTKRILGQRILQDPKTNRAASP*CSDWVT Trigger: CGTGACCCAATCTGAGCAGCAGGGAGAGGCTGCCCT...ATTGGTCTTAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| 3UTR CAA 72 bp | TCAGGAAAGCAGGCAACCATGTGGATCCATGTCTCCTaGCCCAGGCAAAAGCGTGCTAAGGACCCGGGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: SGKQATMWIHVS*PRQKRAKDPGK Trigger: TTTACCCGGGTCCTTAGCACGCTTTTGCCTGGGCAAGGAGACATGGATCCACATGGTTGCCTGCTTTCCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CCA 90 bp | AGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAAGACCAATGAATCCAGCATCCAGCTTGGTGTTCTaGCACTTGGCATTCTCGATC | + |
|
Preference number: 4 (lower is better) Translates to: RGSWGSGSSKILRPMNPASSLVF*HLAFSI Trigger: GATCGAGAATGCCAAGTGCCAGAACACCAAGCTGGA...TGCTGGATTCATTGGTCTTAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR TCA 90 bp | CGGATCCTCCAAGATCCTAAGACCAATGAATCCAGCAAAAAGGCAGAAAGGGAAGACGATGGAGGTGTCTaGGATGTGGGAATGGAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: RILQDPKTNESSKKAEREDDGGV*DVGMED Trigger: ATCCTCCATTCCCACATCTCAGACACCTCCATCGTC...TTCCCTTTCTGCCTTTTTGCTGGATTCATTGGTCTTAGGATCTTGGAGGATCCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CAA 90 bp | AGCCCCTCGTTTGGGGGAGCTGCTGCCAGGCAGACCCGGAAGAAGATGCTCTGGCAGGGGGCGCAGGCATaGGGGGTGCCCACCACCACG | + |
|
Preference number: 5 (lower is better) Translates to: SPSFGGAAARQTRKKMLWQGAQA*GVPTTT Trigger: CGTGGTGGTGGGCACCCCCAATGCCTGCGCCCCCTG...CCAGAGCATCTTCTTCCGGGTCTGCCTGGCAGCAGCTCCCCCAAACGAGGGGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CAA 90 bp | CAGGCAGCTGAGCCCCTCGTTTGGGGGAGCTGCTGCCAGGCAGACCCGGAAGAACTGCACACTCTTGTGTaGACAGCAGGGGCAGTACCA | + |
|
Preference number: 5 (lower is better) Translates to: QAAEPLVWGSCCQADPEELHTLV*TAGAVP Trigger: TGGTACTGCCCCTGCTGTCAACACAAGAGTGTGCAG...TTCTTCCGGGTCTGCCTGGCAGCAGCTCCCCCAAACGAGGGGCTCAGCTGCCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CAA 90 bp | CCGGGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAGACTCCTGCGCATGGTaGAGCTCGGCTGCCAGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: PGKVRQRGSWGSGSSKILDSCAW*SSAASL Trigger: GAGGCTGGCAGCCGAGCTCAACCATGCGCAGGAGTC...TAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACTTTACCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CAA 90 bp | AGGACCCGGGTAAAGTCAGACAAAGAGGATCCTGGGGCAGCGGATCCTCCAAGAACGGCAGCCTCCAGCTaGGTGTTCTGGCACTTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: RTRVKSDKEDPGAADPPRTAASS*VFWHLA Trigger: TGCCAAGTGCCAGAACACCAAGCTGGAGGCTGCCGT...TCTTGGAGGATCCGCTGCCCCAGGATCCTCTTTGTCTGACTTTACCCGGGTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS-3UTR CAA 90 bp | AGAGGATCCTGGGGCAGCGGATCCTCCAAGATCCTAAGACCAATGAATCCAGCAGTGAGCAGGCTCTCATaGACAGAGACTGTGGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: RGSWGSGSSKILRPMNPAVSRLS*TETVVM Trigger: CATCACCACAGTCTCTGTCAATGAGAGCCTGCTCAC...TGCTGGATTCATTGGTCTTAGGATCTTGGAGGATCCGCTGCCCCAGGATCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS GCA 72 bp | TGGGCCCGCAGATGCCTCCAGAGCGGTACCCGAAGCTaGGTCCACAGGAGCCAGAGCGGAAGGCCCCACAGA | + |
|
Preference number: 6 (lower is better) Translates to: WARRCLQSGTRS*VHRSQSGRPHR Trigger: TCTGTGGGGCCTTCCGCTCTGGCTCCTGTGGACGCAGCTTCGGGTACCGCTCTGGAGGCATCTGCGGGCCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||
| CDS GCA 72 bp | CGCAGAGATCGCCACAGACGACGCCACCGCGGGAGCTaGTCACACACACATTCACGGAGCCAACGCCCTCAC | + |
|
Preference number: 6 (lower is better) Translates to: RRDRHRRRHRGS*SHTHSRSQRPH Trigger: GTGAGGGCGTTGGCTCCGTGAATGTGTGTGTGAGCAGCTCCCGCGGTGGCGTCGTCTGTGGCGATCTCTGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088049.5 |
||