Pregenerated sensors for KRT83 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067613Ensembl transcript IDs: ENSMUST00000023718.9
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCAGAGGCACAGGAAACAGCACTGGGTATTCCCAGGGCTGCAGCTaGGGCAGGAGGCTGATCTATCAGCAGCAAGCCCCTTGCCAGCAG | + |
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Preference number: 1 (lower is better) Translates to: ARGTGNSTGYSQGCS*GRRLIYQQQAPCQQ Trigger: CTGCTGGCAAGGGGCTTGCTGCTGATAGATCAGCCTCCTGCCTCAGCTGCAGCCCTGGGAATACCCAGTGCTGTTTCCTGTGCCTCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| 3UTR CCA 90 bp | GCCCCTTGCCAGCAGGTAGCTGAATGGAGTGGCAGCTGCTGGGGATaGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTTGAAGCT | + |
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Preference number: 1 (lower is better) Translates to: APCQQVAEWSGSCWG*GMYSQNTRAADLEA Trigger: AGCTTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCCACTCCATTCAGCTACCTGCTGGCAAGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| 3UTR CCA 90 bp | CAGCAAGCCCCTTGCCAGCAGGTAGCTGAATGGAGTGGCAGCTGCTaGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTT | + |
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Preference number: 1 (lower is better) Translates to: QQAPCQQVAEWSGSC*GWGMYSQNTRAADL Trigger: AAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCCACTCCATTCAGCTACCTGCTGGCAAGGGGCTTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| 3UTR-3UTR TCA 90 bp | CCAGAGGCACAGGAAACAGCACTGGGTATTCCCAGGGCTGCAGCTGAGGCAGGATTGCCAGCAGGTAGCTaGATGGAGTGGCAGCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: PEAQETALGIPRAAAEAGLPAGS*MEWQLL Trigger: CAGCAGCTGCCACTCCATTCAGCTACCTGCTGGCAA...TCCTGCCTCAGCTGCAGCCCTGGGAATACCCAGTGCTGTTTCCTGTGCCTCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| 3UTR-3UTR CCA 90 bp | CCAGAGGCACAGGAAACAGCACTGGGTATTCCCAGGGCTGCAGCTGAGGCAGGAGGCAGCTGCTGGGGATaGGGAATGTATTCTCAGAAC | + |
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Preference number: 2 (lower is better) Translates to: PEAQETALGIPRAAAEAGGSCWG*GMYSQN Trigger: GTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCC...TCCTGCCTCAGCTGCAGCCCTGGGAATACCCAGTGCTGTTTCCTGTGCCTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| 3UTR CCA 72 bp | CCTTGCCAGCAGGTAGCTGAATGGAGTGGCAGCTGCTaGGGATGGGGAATGTATTCTCAGAACACAAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: PCQQVAEWSGSC*GWGMYSQNTRA Trigger: TGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCCACTCCATTCAGCTACCTGCTGGCAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR TCA 90 bp | AGGAGGCTGATCTATCAGCAGCAAGCCCCTTGCCAGCAGGTAGCTGAATGGAGTCCGGGGCCCGCAGGCTaGGGCGCAGCTGAAGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: RRLIYQQQAPCQQVAEWSPGPAG*GAAEVS Trigger: GGAAACTTCAGCTGCGCCTCAGCCTGCGGGCCCCGG...ACTCCATTCAGCTACCTGCTGGCAAGGGGCTTGCTGCTGATAGATCAGCCTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR TCA 90 bp | GCACAACAGGGCCTAGAGGCCAGAGGCACAGGAAACAGCACTGGGTATTCCCAGACTCCTGCGCATGGTTaGGCTCAGCAGCCAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: AQQGLEARGTGNSTGYSQTPAHG*AQQPAS Trigger: GGAGGCTGGCTGCTGAGCTCAACCATGCGCAGGAGT...CTGGGAATACCCAGTGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCCTGTTGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | ACAGGGCCTAGAGGCCAGAGGCACAGGAAACAGCACTGGGTATTCCCAGGGCTGCTGCCACATTCCCGCTaGATGGGGCACTGCAGACAC | + |
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Preference number: 4 (lower is better) Translates to: TGPRGQRHRKQHWVFPGLLPHSR*MGHCRH Trigger: GTGTCTGCAGTGCCCCATGCAGCGGGAATGTGGCAG...CAGCCCTGGGAATACCCAGTGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | GCTGCTGGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTTGAAGGCCCCTGTAGGGAGCTaGAGAGATGCAGCAGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: AAGDGECILRTQGQQTLKAPVGS*RDAAAA Trigger: GGCCGCTGCTGCATCTCTGCAGCTCCCTACAGGGGC...CTTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | CCTTGCCAGCAGGTAGCTGAATGGAGTGGCAGCTGCTGGGGATGGGGAATGTATCCCTCCATGGACTCCTaGGCATGGTTGAGCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PCQQVAEWSGSCWGWGMYPSMDS*AWLSSA Trigger: TGCTGAGCTCAACCATGCGCAGGAGTCCATGGAGGG...ATACATTCCCCATCCCCAGCAGCTGCCACTCCATTCAGCTACCTGCTGGCAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | CCTTGCCAGCAGGTAGCTGAATGGAGTGGCAGCTGCTGGGGATGGGGAATGTATAGGGCAGCCTCTCCCTaGTGCTCAGATTGGGTCACA | + |
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Preference number: 4 (lower is better) Translates to: PCQQVAEWSGSCWGWGMYRAASP*CSDWVT Trigger: TGTGACCCAATCTGAGCAGCAGGGAGAGGCTGCCCT...ATACATTCCCCATCCCCAGCAGCTGCCACTCCATTCAGCTACCTGCTGGCAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | GCTGGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTTGAAGCTACCTTCACACAGCCTCTaGTCCTCGCCCTCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: AGDGECILRTQGQQTLKLPSHSL*SSPSSR Trigger: CCTGCTGGAGGGCGAGGAGCAGAGGCTGTGTGAAGG...TAGCTTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR CCA 90 bp | GACCTTGAAGCTACCATGCTTAGCCTTGTAGTCCAGGCCACTTCCTGGCTCCCTATGGACTCCTGCGCATaGTTGAGCTCAGCAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: DLEATMLSLVVQATSWLPMDSCA*LSSAAS Trigger: GCTGGCTGCTGAGCTCAACCATGCGCAGGAGTCCAT...AGGGAGCCAGGAAGTGGCCTGGACTACAAGGCTAAGCATGGTAGCTTCAAGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | ACAGTTTATTGCACAACAGGGCCTAGAGGCCAGAGGCACAGGAAACAGCACTGGCGCAGAGTCTCTCCATaGCGGATCACTGTGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TVYCTTGPRGQRHRKQHWRRVSP*RITVAF Trigger: GAAGGCCACAGTGATCCGGCATGGAGAGACTCTGCG...CCAGTGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCCTGTTGTGCAATAAACTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | AGCTGCTGGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTTGAACGCTGCATGGGGCACTaGAGACACTGCCTGTCACAG | + |
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Preference number: 4 (lower is better) Translates to: SCWGWGMYSQNTRAADLERCMGH*RHCLSQ Trigger: CTGTGACAGGCAGTGTCTGCAGTGCCCCATGCAGCG...TTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR CCA 90 bp | CAGTTTATTGCACAACAGGGCCTAGAGGCCAGAGGCACAGGAAACAGCACTGGGAGGAAGTCGGTCTCTTaGGTCAGAGCCTCTGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: QFIAQQGLEARGTGNSTGRKSVS*VRASAL Trigger: CAACGCAGAGGCTCTGACCCAAGAGACCGACTTCCT...CCCAGTGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCCTGTTGTGCAATAAACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | AGTGGCAGCTGCTGGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACTGCTGTGGCCCGGAGTaGAACTTCTTCTTCATACCT | + |
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Preference number: 4 (lower is better) Translates to: SGSCWGWGMYSQNTRAADCCGPE*NFFFIP Trigger: AGGTATGAAGAAGAAGTTGCACTCCGGGCCACAGCA...GTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR CCA 90 bp | TGGCAGCTGCTGGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTACTCATTCTCTGCTGTaGCCCGGAGTGCAACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: WQLLGMGNVFSEHKGSRPTHSLL*PGVQLL Trigger: AAGAAGTTGCACTCCGGGCCACAGCAGAGAATGAGT...AGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | AGCTGCTGGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTTGAACACAAACTCATTCTCTaGTGTGGCCCGGAGTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: SCWGWGMYSQNTRAADLEHKLIL*CGPECN Trigger: GTTGCACTCCGGGCCACAGCAGAGAATGAGTTTGTG...TTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR TCA 90 bp | TGCTGGGGATGGGGAATGTATTCTCAGAACACAAGGGCAGCAGACCTTGAAGCTGATGACAGATGTGTCTaGGATGTGGGAATGGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: CWGWGMYSQNTRAADLEADDRCV*DVGMED Trigger: ATCCTCCATTCCCACATCTCAGACACATCTGTCATC...AGCTTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTCCCCATCCCCAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR GCA 90 bp | GAATGTATTCTCAGAACACAAGGGCAGCAGACCTTGAAGCTACCATGCTTAGCCACAGAGGCTCCATGTTaGTCTCACAGCACTTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: ECILRTQGQQTLKLPCLATEAPC*SHSTCG Trigger: ACCGCAAGTGCTGTGAGAGCAACATGGAGCCTCTGT...GGCTAAGCATGGTAGCTTCAAGGTCTGCTGCCCTTGTGTTCTGAGAATACATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS GCA 90 bp | CACACAGGCCAGTGCTTACTGCCACATTCCCGCTGCATGGGGCACTaGAGACACTGCCTGTCACAGGCCGTGAGCCAGACACACAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: HTGQCLLPHSRCMGH*RHCLSQAVSQTHRG Trigger: ACCTCTGTGTGTCTGGCTCACGGCCTGTGACAGGCAGTGTCTGCAGTGCCCCATGCAGCGGGAATGTGGCAGTAAGCACTGGCCTGTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR CAA 90 bp | GGGCCTAGAGGCCAGAGGCACAGGAAACAGCACTGGGTATTCCCAGGGCTGCAGTTCATCTCCTCACACTaGGTGCGGTACCAGGACTCG | + |
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Preference number: 5 (lower is better) Translates to: GPRGQRHRKQHWVFPGLQFISSH*VRYQDS Trigger: CGAGTCCTGGTACCGCACCAAGTGTGAGGAGATGAA...CTGCAGCCCTGGGAATACCCAGTGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS-3UTR CAA 90 bp | CAGTTTATTGCACAACAGGGCCTAGAGGCCAGAGGCACAGGAAACAGCACTGGGGTCAGAGCCTCTGCGTaGGCCTCCAGATCTGACTTG | + |
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Preference number: 5 (lower is better) Translates to: QFIAQQGLEARGTGNSTGVRASA*ASRSDL Trigger: CAAGTCAGATCTGGAGGCCAACGCAGAGGCTCTGAC...CCCAGTGCTGTTTCCTGTGCCTCTGGCCTCTAGGCCCTGTTGTGCAATAAACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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| CDS GCA 72 bp | CAGTGCTTACTGCCACATTCCCGCTGCATGGGGCACTaGAGACACTGCCTGTCACAGGCCGTGAGCCAGACA | + |
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Preference number: 6 (lower is better) Translates to: QCLLPHSRCMGH*RHCLSQAVSQT Trigger: TGTCTGGCTCACGGCCTGTGACAGGCAGTGTCTGCAGTGCCCCATGCAGCGGGAATGTGGCAGTAAGCACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023718.9 |
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