Pregenerated sensors for KRT81 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067615Ensembl transcript IDs: ENSMUST00000061185.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGCTCACAGTTAAGGCAGGATAGGTGGTGTTCTAGCCCTGCCCCCAGACTCCCCGCCAGTATTCACTTCTaGGAACAAGGGCGTGGTCTA | + |
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Preference number: 2 (lower is better) Translates to: GSQLRQDRWCSSPAPRLPASIHF*EQGRGL Trigger: TAGACCACGCCCTTGTTCTCAGAAGTGAATACTGGC...GGGGAGTCTGGGGGCAGGGCTAGAACACCACCTATCCTGCCTTAACTGTGAGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| 3UTR CCA 72 bp | TCTCTAGCTACTGGCTCACAGTTAAGGCAGGATAGGTaGTGTTCTAGCCCTGCCCCCAGACTCCCCACCCTG | + |
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Preference number: 3 (lower is better) Translates to: SLATGSQLRQDR*CSSPAPRLPTL Trigger: CAGGGTGGGGAGTCTGGGGGCAGGGCTAGAACACCACCTATCCTGCCTTAACTGTGAGCCAGTAGCTAGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR GCA 90 bp | GGCTCACAGTTAAGGCAGGATAGGTGGTGTTCTAGCCCTGCCCCCAGACTCCCCAGGGAGCTGCAGAGATaGAGCAGCGGCCGGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GSQLRQDRWCSSPAPRLPRELQR*SSGRAW Trigger: CCAGGCCCGGCCGCTGCTGCATCTCTGCAGCTCCCT...GGGGAGTCTGGGGGCAGGGCTAGAACACCACCTATCCTGCCTTAACTGTGAGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR GCA 90 bp | CAGTTAAGGCAGGATAGGTGGTGTTCTAGCCCTGCCCCCAGACTCCCCACCCTGCGCTGCAGGGGGCGCTaGAGGCACTGCCGATCACTG | + |
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Preference number: 4 (lower is better) Translates to: QLRQDRWCSSPAPRLPTLRCRGR*RHCRSL Trigger: CAGTGATCGGCAGTGCCTGCAGCGCCCCCTGCAGCG...CAGGGTGGGGAGTCTGGGGGCAGGGCTAGAACACCACCTATCCTGCCTTAACTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR TCA 90 bp | GACTCCCCACCCTGCAGCTCCAAAGGGACTTCTAGAAGCCAGTATTCACTTCTGACTCCTGTGCATGGTTaGGCTCAGCAGCCAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: DSPPCSSKGTSRSQYSLLTPVHG*AQQPAS Trigger: GGAGGCTGGCTGCTGAGCTCAACCATGCACAGGAGT...CAGAAGTGAATACTGGCTTCTAGAAGTCCCTTTGGAGCTGCAGGGTGGGGAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR TCA 90 bp | GACTCCCCACCCTGCAGCTCCAAAGGGACTTCTAGAAGCCAGTATTCACTTCTGCACTGGCCTGGAACCTaGCACACACAGGTCCCCACA | + |
|
Preference number: 4 (lower is better) Translates to: DSPPCSSKGTSRSQYSLLHWPGT*HTQVPT Trigger: TGTGGGGACCTGTGTGTGTCAGGTTCCAGGCCAGTG...CAGAAGTGAATACTGGCTTCTAGAAGTCCCTTTGGAGCTGCAGGGTGGGGAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR GCA 90 bp | TGCAGCTCCAAAGGGACTTCTAGAAGCCAGTATTCACTTCTGAGAACAAGGGCGGCAGCCTCTCCCTGCTaGTCAGACTGGGTCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: CSSKGTSRSQYSLLRTRAAASPC*SDWVTA Trigger: TGCTGTGACCCAGTCTGAGCAGCAGGGAGAGGCTGC...CGCCCTTGTTCTCAGAAGTGAATACTGGCTTCTAGAAGTCCCTTTGGAGCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR CCA 90 bp | GACTCCCCACCCTGCAGCTCCAAAGGGACTTCTAGAAGCCAGTATTCACTTCTGATGGACTCCTGTGCATaGTTGAGCTCAGCAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: DSPPCSSKGTSRSQYSLLMDSCA*LSSAAS Trigger: GCTGGCTGCTGAGCTCAACCATGCACAGGAGTCCAT...CAGAAGTGAATACTGGCTTCTAGAAGTCCCTTTGGAGCTGCAGGGTGGGGAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR GCA 90 bp | TGCAGCTCCAAAGGGACTTCTAGAAGCCAGTATTCACTTCTGAGAACAAGGGCGCGCAGAGTCTCTCCATaGCGGATCACTGTGGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: CSSKGTSRSQYSLLRTRARRVSP*RITVAF Trigger: AAAGGCCACAGTGATCCGGCATGGAGAGACTCTGCG...CGCCCTTGTTCTCAGAAGTGAATACTGGCTTCTAGAAGTCCCTTTGGAGCTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR CCA 90 bp | ACTTCTAGAAGCCAGTATTCACTTCTGAGAACAAGGGCGTGGTCTAGAGAGACCTCAGTGCCTCTGCGTTaGCCTCCAGATCTGACTTGC | + |
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Preference number: 4 (lower is better) Translates to: TSRSQYSLLRTRAWSRETSVPLR*PPDLTC Trigger: GCAAGTCAGATCTGGAGGCCAACGCAGAGGCACTGA...GGTCTCTCTAGACCACGCCCTTGTTCTCAGAAGTGAATACTGGCTTCTAGAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS GCA 90 bp | CGCACAGGCCTGTGTTCACCGCCAAGTTCCCGCTGCAGGGGGCGCTaGAGGCACTGCCGATCACTGGCCTGGAACCTGACACACACAGGT | + |
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Preference number: 5 (lower is better) Translates to: RTGLCSPPSSRCRGR*RHCRSLAWNLTHTG Trigger: ACCTGTGTGTGTCAGGTTCCAGGCCAGTGATCGGCAGTGCCTGCAGCGCCCCCTGCAGCGGGAACTTGGCGGTGAACACAGGCCTGTGCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS GCA 90 bp | CTGTGTTCACCGCCAAGTTCCCGCTGCAGGGGGCGCTGCAGGCACTaGCGATCACTGGCCTGGAACCTGACACACACAGGTCCCCACATA | + |
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Preference number: 5 (lower is better) Translates to: LCSPPSSRCRGRCRH*RSLAWNLTHTGPHI Trigger: TATGTGGGGACCTGTGTGTGTCAGGTTCCAGGCCAGTGATCGGCAGTGCCTGCAGCGCCCCCTGCAGCGGGAACTTGGCGGTGAACACAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR CAA 90 bp | GGCTCACAGTTAAGGCAGGATAGGTGGTGTTCTAGCCCTGCCCCCAGACTCCCCGACTCCTGTGCATGGTaGAGCTCAGCAGCCAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: GSQLRQDRWCSSPAPRLPDSCAW*SSAASL Trigger: GAGGCTGGCTGCTGAGCTCAACCATGCACAGGAGTC...GGGGAGTCTGGGGGCAGGGCTAGAACACCACCTATCCTGCCTTAACTGTGAGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR CAA 90 bp | CAGTTAAGGCAGGATAGGTGGTGTTCTAGCCCTGCCCCCAGACTCCCCACCCTGATTCTGTTCAGCTCATaGATCTCCTCTCTGGTGCGG | + |
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Preference number: 5 (lower is better) Translates to: QLRQDRWCSSPAPRLPTLILFSS*ISSLVR Trigger: CCGCACCAGAGAGGAGATCAATGAGCTGAACAGAAT...CAGGGTGGGGAGTCTGGGGGCAGGGCTAGAACACCACCTATCCTGCCTTAACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR CAA 90 bp | TGCAGCTCCAAAGGGACTTCTAGAAGCCAGTATTCACTTCTGAGAACAAGGGCGGTCAGTGCCTCTGCGTaGGCCTCCAGATCTGACTTG | + |
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Preference number: 5 (lower is better) Translates to: CSSKGTSRSQYSLLRTRAVSASA*ASRSDL Trigger: CAAGTCAGATCTGGAGGCCAACGCAGAGGCACTGAC...CGCCCTTGTTCTCAGAAGTGAATACTGGCTTCTAGAAGTCCCTTTGGAGCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS-3UTR CAA 90 bp | TGCAGCTCCAAAGGGACTTCTAGAAGCCAGTATTCACTTCTGAGAACAAGGGCGACAGCAGCCTCCAGCTaGGTGTTCTGGCACTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: CSSKGTSRSQYSLLRTRATAASS*VFWHLA Trigger: TGCCAAGTGCCAGAACACCAAGCTGGAGGCTGCTGT...CGCCCTTGTTCTCAGAAGTGAATACTGGCTTCTAGAAGTCCCTTTGGAGCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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| CDS GCA 72 bp | CTGTGTTCACCGCCAAGTTCCCGCTGCAGGGGGCGCTaGAGGCACTGCCGATCACTGGCCTGGAACCTGACA | + |
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Preference number: 6 (lower is better) Translates to: LCSPPSSRCRGR*RHCRSLAWNLT Trigger: TGTCAGGTTCCAGGCCAGTGATCGGCAGTGCCTGCAGCGCCCCCTGCAGCGGGAACTTGGCGGTGAACACAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061185.8 |
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