Pregenerated sensors for KRT8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049382

Ensembl transcript IDs: ENSMUST00000023952.10

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	TGGGATATCCCAGATAGGAAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGACAGCTGTCTCCCCGTaGGCCCTGAGCAGCTGCAGG	+
Preference number: 2 (lower is better) Translates to: WDIPDRKFLLRLARGLGLTAVSP*ALSSCR Trigger: CCTGCAGCTGCTCAGGGCTCACGGGGAGACAGCTGT...CAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGATATCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR CCA 90 bp	TGTCTCCCCGTGAGCCCTGAGCAGCTGCAGGAGCTCAGGCTGGCAAGGACTTCACCCGGGGACCGGAGGTaGACATCTTGTAGGATTTCT	+
Preference number: 4 (lower is better) Translates to: CLPVSPEQLQELRLARTSPGDRR*TSCRIS Trigger: AGAAATCCTACAAGATGTCCACCTCCGGTCCCCGGG...TGAAGTCCTTGCCAGCCTGAGCTCCTGCAGCTGCTCAGGGCTCACGGGGAGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR GCA 90 bp	ATCCCAGATAGGAAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCTTCCCCGGAAGCTGCTaGTGCTGCTGCCCACCCGGG	+
Preference number: 4 (lower is better) Translates to: IPDRKFLLRLARGLGLILFPGSC*CCCPPG Trigger: CCCGGGTGGGCAGCAGCAGCAGCAGCTTCCGGGGAA...GAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR GCA 90 bp	ATCCCAGATAGGAAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCCCCGGAAGCTGCTGCTaGTGCTGCCCACCCGGGAAA	+
Preference number: 4 (lower is better) Translates to: IPDRKFLLRLARGLGLILPGSCC*CCPPGK Trigger: TTTCCCGGGTGGGCAGCAGCAGCAGCAGCTTCCGGG...GAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR CCA 90 bp	AAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCGGACGGGTCTCTGCTCAGCATCAGCGATaGCTGCCTCCAACGATGCCC	+
Preference number: 4 (lower is better) Translates to: KFLLRLARGLGLILGRVSAQHQR*LPPTMP Trigger: GGGCATCGTTGGAGGCAGCCATCGCTGATGCTGAGC...AGAGACCCGTCCGAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR GCA 90 bp	AAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCGGACGGGTCTCTCAGCCTCAGCTCGGCTaGGATTGGCAATGTCCTCGT	+
Preference number: 4 (lower is better) Translates to: KFLLRLARGLGLILGRVSQPQLG*DWQCPR Trigger: ACGAGGACATTGCCAATCGCAGCCGAGCTGAGGCTG...AGAGACCCGTCCGAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR TCA 90 bp	AAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCGGACGGGTCTCTTCTGCCGGAGGAAGTTaGTCTCGTCGGTCAGTCCTT	+
Preference number: 4 (lower is better) Translates to: KFLLRLARGLGLILGRVSSAGGS*SRRSVL Trigger: AAGGACTGACCGACGAGATCAACTTCCTCCGGCAGA...AGAGACCCGTCCGAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
3UTR CAA 72 bp	CATTGGGATATCCCAGATAGGAAATTCCTCCTAAGGTaGGCCAGAGGATTAGGGCTGATCCTCGGACGGGTC	+
Preference number: 4 (lower is better) Translates to: HWDIPDRKFLLR*ARGLGLILGRV Trigger: GACCCGTCCGAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGATATCCCAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR GCA 90 bp	GATATCCCAGATAGGAAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCAGATCTCTGTCTTTGTaGGGCGCAGATCATCCCCGT	+
Preference number: 4 (lower is better) Translates to: DIPDRKFLLRLARGLGLIRSLSL*GADHPR Trigger: ACGGGGATGATCTGCGCCGCACAAAGACAGAGATCT...GATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGATATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR CCA 90 bp	GATATCCCAGATAGGAAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCGCAATGTCCTCGTACTaGGCACGAACTTCAGCGATG	+
Preference number: 4 (lower is better) Translates to: DIPDRKFLLRLARGLGLIAMSSY*ARTSAM Trigger: CATCGCTGAAGTTCGTGCCCAGTACGAGGACATTGC...GATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGATATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR CAA 90 bp	ATCCCAGATAGGAAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCACCAGGCCCTGCATGTaGCCAAGCTCAGCCTCCAGC	+
Preference number: 5 (lower is better) Translates to: IPDRKFLLRLARGLGLILTRPCM*PSSASS Trigger: GCTGGAGGCTGAGCTTGGCAACATGCAGGGCCTGGT...GAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR CAA 90 bp	AAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCGGACGGGTCTCTATCTGCCGGAGGAAGTaGATCTCGTCGGTCAGTCCT	+
Preference number: 5 (lower is better) Translates to: KFLLRLARGLGLILGRVSICRRK*ISSVSP Trigger: AGGACTGACCGACGAGATCAACTTCCTCCGGCAGAT...AGAGACCCGTCCGAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS-3UTR CAA 90 bp	ATCCCAGATAGGAAATTCCTCCTAAGGTTGGCCAGAGGATTAGGGCTGATCCTCTTCACAACCACAGCCTaGGTGGTGCGGCTGAAAGTG	+
Preference number: 5 (lower is better) Translates to: IPDRKFLLRLARGLGLILFTTTA*VVRLKV Trigger: CACTTTCAGCCGCACCACCAAGGCTGTGGTTGTGAA...GAGGATCAGCCCTAATCCTCTGGCCAACCTTAGGAGGAATTTCCTATCTGGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS GCA 72 bp	CCCCGCCAAAGCCGCCCAGACCCACGCCGGTGCCCATaGTTCCCCGGAAGCTGCTGCTGCTGCTGCCCACCC	+
Preference number: 6 (lower is better) Translates to: PRQSRPDPRRCP*FPGSCCCCCPP Trigger: GGGTGGGCAGCAGCAGCAGCAGCTTCCGGGGAAGCATGGGCACCGGCGTGGGTCTGGGCGGCTTTGGCGGGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023952.10
CDS GCA 72 bp	CACCAGCCCCGCCAAAGCCGCCCAGACCCACGCCGGTaGCCATGCTTCCCCGGAAGCTGCTGCTGCTGCTGC	+
Preference number: 6 (lower is better) Translates to: HQPRQSRPDPRR*PCFPGSCCCCC Trigger: GCAGCAGCAGCAGCAGCTTCCGGGGAAGCATGGGCACCGGCGTGGGTCTGGGCGGCTTTGGCGGGGCTGGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023952.10