Pregenerated sensors for KRT71 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051879Ensembl transcript IDs: ENSMUST00000023710.6
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGGTGGAAGGGACAGGCTGGACCTGAGCTGAAGCTTAGAAACCCCTaGTGTCTGTCAGAAGTGCACCACATGGTAGCCCAGAGCTACCCA | + |
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Preference number: 1 (lower is better) Translates to: WWKGQAGPELKLRNP*CLSEVHHMVAQSYP Trigger: TGGGTAGCTCTGGGCTACCATGTGGTGCACTTCTGACAGACACCAGGGGTTTCTAAGCTTCAGCTCAGGTCCAGCCTGTCCCTTCCACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR-3UTR TCA 90 bp | CATGGTAGCCCAGAGCTACCCAGGCTCAGAACACTTGGAGAGAGAAGGAGGTTAGGGCACAGAGGGTGCTaGGGGATCGAGGTCACAAGA | + |
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Preference number: 2 (lower is better) Translates to: HGSPELPRLRTLGERRRLGHRGC*GIEVTR Trigger: TCTTGTGACCTCGATCCCTCAGCACCCTCTGTGCCC...TAACCTCCTTCTCTCTCCAAGTGTTCTGAGCCTGGGTAGCTCTGGGCTACCATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR-3UTR CCA 90 bp | GAGGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCCCTGGTTCTGAGACTGTGCCGGGGTaGGGTGGGCTCCCAACTCTG | + |
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Preference number: 2 (lower is better) Translates to: EGLKEYKRSQGCPIFPGSETVPG*GGLPTL Trigger: CAGAGTTGGGAGCCCACCCCACCCCGGCACAGTCTC...AGAACCAGGGAAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCCCTGGTTCTGGAACCAGGTAGTGTGGTaGGGACGGAGGCAAAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: GLKRIQEKPRLSHFPWFWNQVVW*GRRQRL Trigger: CAGCCTTTGCCTCCGTCCTCACCACACTACCTGGTT...CCAGAACCAGGGAAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR-3UTR CCA 90 bp | AGAATGCAACAGGGAGGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATGACGGAGGCAAAGGCTaGTGGAAGGGACAGGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: RMQQGGLKRIQEKPRLSHDGGKG*WKGQAG Trigger: TCCAGCCTGTCCCTTCCACCAGCCTTTGCCTCCGTC...ATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCCTCCCTGTTGCATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR-3UTR TCA 90 bp | ATGCAACAGGGAGGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCTGGGTTCAAGAAAGTaGAGACAGAGTCCCTTTACT | + |
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Preference number: 2 (lower is better) Translates to: MQQGGLKRIQEKPRLSHFLGSRK*RQSPFT Trigger: AGTAAAGGGACTCTGTCTTCACTTTCTTGAACCCAG...AAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCCTCCCTGTTGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR-3UTR CCA 90 bp | TTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCCCTGGTTCTGGGTTCCTCCCAACTCTGAGTTaGTTTTCTGTTAGTCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: LKEYKRSQGCPIFPGSGFLPTLS*FSVSLL Trigger: AAGAAGACTAACAGAAAACCAACTCAGAGTTGGGAG...GAACCCAGAACCAGGGAAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR TCA 72 bp | AGCCCAGATGGAGACCCAAGAAACCAGGTAGTGTGGTaGGGACGGAGGCAAAGGCTGGTGGAAGGGACAGGC | + |
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Preference number: 3 (lower is better) Translates to: SPDGDPRNQVVW*GRRQRLVEGTG Trigger: GCCTGTCCCTTCCACCAGCCTTTGCCTCCGTCCTCACCACACTACCTGGTTTCTTGGGTCTCCATCTGGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR TCA 72 bp | GCAAAGGCTGGTGGAAGGGACAGGCTGGACCTGAGCTaGAGCTTAGAAACCCCTGGTGTCTGTCAGAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: AKAGGRDRLDLS*SLETPGVCQKC Trigger: GCACTTCTGACAGACACCAGGGGTTTCTAAGCTTCAGCTCAGGTCCAGCCTGTCCCTTCCACCAGCCTTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR CCA 72 bp | GGACAGGCTGGACCTGAGCTGAAGCTTAGAAACCCCTaGTGTCTGTCAGAAGTGCACCACATGGTAGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: GQAGPELKLRNP*CLSEVHHMVAQ Trigger: CTGGGCTACCATGTGGTGCACTTCTGACAGACACCAGGGGTTTCTAAGCTTCAGCTCAGGTCCAGCCTGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR CCA 72 bp | GCTGGGACAAAAGCTCAGCAGACGAGGAAGCCCAGATaGAGACCCAAGAAACCAGGTAGTGTGGTGAGGACG | + |
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Preference number: 3 (lower is better) Translates to: AGTKAQQTRKPR*RPKKPGSVVRT Trigger: CGTCCTCACCACACTACCTGGTTTCTTGGGTCTCCATCTGGGCTTCCTCGTCTGCTGAGCTTTTGTCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR CCA 72 bp | TTGGGTACAGCTCTAGCTTGTGTTGTACACAGGAGCTaGGACAAAAGCTCAGCAGACGAGGAAGCCCAGATG | + |
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Preference number: 3 (lower is better) Translates to: LGTALACVVHRS*DKSSADEEAQM Trigger: CATCTGGGCTTCCTCGTCTGCTGAGCTTTTGTCCCAGCTCCTGTGTACAACACAAGCTAGAGCTGTACCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR TCA 72 bp | TGGGTTCAAGAAAGTGAAGACAGAGTCCCTTTACTCTaGGTGGTTCCACTCAAAACGAGACTGTGCCGGGGT | + |
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Preference number: 3 (lower is better) Translates to: WVQESEDRVPLL*VVPLKTRLCRG Trigger: ACCCCGGCACAGTCTCGTTTTGAGTGGAACCACTCAGAGTAAAGGGACTCTGTCTTCACTTTCTTGAACCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR TCA 72 bp | GCTGTCCCATTTTCCCTGGTTCTGGGTTCAAGAAAGTaGAGACAGAGTCCCTTTACTCTGAGTGGTTCCACT | + |
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Preference number: 3 (lower is better) Translates to: AVPFSLVLGSRK*RQSPFTLSGST Trigger: AGTGGAACCACTCAGAGTAAAGGGACTCTGTCTTCACTTTCTTGAACCCAGAACCAGGGAAAATGGGACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR CCA 72 bp | AGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCCCTaGTTCTGGGTTCAAGAAAGTGAAGACAGAGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: RIQEKPRLSHFP*FWVQESEDRVP Trigger: AGGGACTCTGTCTTCACTTTCTTGAACCCAGAACCAGGGAAAATGGGACAGCCTTGGCTTCTCTTGTATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | GACGGAGGCAAAGGCTGGTGGAAGGGACAGGCTGGACCTGAGCTGAAGCTTAGATGCCAAAGCCCCCGCTaGGCCCTTTGCCTCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: DGGKGWWKGQAGPELKLRCQSPR*ALCLLP Trigger: GGGCAGGAGGCAAAGGGCTCAGCGGGGGCTTTGGCA...TCTAAGCTTCAGCTCAGGTCCAGCCTGTCCCTTCCACCAGCCTTTGCCTCCGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | GACGGAGGCAAAGGCTGGTGGAAGGGACAGGCTGGACCTGAGCTGAAGCTTAGACCACGTAGCCACCGCTaGCTGTGCTGGGCCGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: DGGKGWWKGQAGPELKLRPRSHR*LCWAGS Trigger: GCTTCCGGCCCAGCACAGTCAGCGGTGGCTACGTGG...TCTAAGCTTCAGCTCAGGTCCAGCCTGTCCCTTCCACCAGCCTTTGCCTCCGTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | AAGCCCAGATGGAGACCCAAGAAACCAGGTAGTGTGGTGAGGACGGAGGCAAAGTGGCCCGGGCATCCTTaGGGGCACTGTCACCTCGCT | + |
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Preference number: 4 (lower is better) Translates to: KPRWRPKKPGSVVRTEAKWPGHP*GHCHLA Trigger: AGCGAGGTGACAGTGCCCTCAAGGATGCCCGGGCCA...CTTTGCCTCCGTCCTCACCACACTACCTGGTTTCTTGGGTCTCCATCTGGGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR GCA 90 bp | GACGGAGGCAAAGGCTGGTGGAAGGGACAGGCTGGACCTGAGCTGAAGCTTAGACGACCAGCTGCCAGCTaGAGCTCCTGGAACTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: DGGKGWWKGQAGPELKLRRPAAS*SSWNLV Trigger: GACCAAGTTCCAGGAGCTGCAGCTGGCAGCTGGTCG...TCTAAGCTTCAGCTCAGGTCCAGCCTGTCCCTTCCACCAGCCTTTGCCTCCGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | AAGCCCAGATGGAGACCCAAGAAACCAGGTAGTGTGGTGAGGACGGAGGCAAAGCTGCGGAGCAACCACTaGAGCCCCTGTTGCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: KPRWRPKKPGSVVRTEAKLRSNH*SPCCWL Trigger: GAGCCAGCAACAGGGGCTTCAGTGGTTGCTCCGCAG...CTTTGCCTCCGTCCTCACCACACTACCTGGTTTCTTGGGTCTCCATCTGGGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | GACGGAGGCAAAGGCTGGTGGAAGGGACAGGCTGGACCTGAGCTGAAGCTTAGACAGCTGTCCGCCGGTTaGTCTCCTCCTCATACTTCT | + |
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Preference number: 4 (lower is better) Translates to: DGGKGWWKGQAGPELKLRQLSAG*SPPHTS Trigger: AGAAGTATGAGGAGGAGATCAACCGGCGGACAGCTG...TCTAAGCTTCAGCTCAGGTCCAGCCTGTCCCTTCCACCAGCCTTTGCCTCCGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR GCA 90 bp | AAGCCCAGATGGAGACCCAAGAAACCAGGTAGTGTGGTGAGGACGGAGGCAAAGTCCCCCAGAGAGCACTaGGGAGCAACCACTGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: KPRWRPKKPGSVVRTEAKSPREH*GATTEA Trigger: GGCTTCAGTGGTTGCTCCGCAGTGCTCTCTGGGGGA...CTTTGCCTCCGTCCTCACCACACTACCTGGTTTCTTGGGTCTCCATCTGGGCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | AAGCCCAGATGGAGACCCAAGAAACCAGGTAGTGTGGTGAGGACGGAGGCAAAGTCATTGACTGTGACCTaGTGGATACCGCCAGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: KPRWRPKKPGSVVRTEAKSLTVT*WIPPGG Trigger: CCCGCCTGGCGGTATCCATCAGGTCACAGTCAATGA...CTTTGCCTCCGTCCTCACCACACTACCTGGTTTCTTGGGTCTCCATCTGGGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CCA 90 bp | CATGGTAGCCCAGAGCTACCCAGGCTCAGAACACTTGGAGAGAGAAGGAGGTTATTGAGGTCATCTCCATaGCGACCAGCTGCCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HGSPELPRLRTLGERRRLLRSSP*RPAASC Trigger: GCAGCTGGCAGCTGGTCGCCATGGAGATGACCTCAA...TAACCTCCTTCTCTCTCCAAGTGTTCTGAGCCTGGGTAGCTCTGGGCTACCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR GCA 90 bp | GGACCTGAGCTGAAGCTTAGAAACCCCTGGTGTCTGTCAGAAGTGCACCACATGCTTTCTTGGAGGGGGTaGTCAGACTGGAGCCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: GPELKLRNPWCLSEVHHMLSWRG*SDWSPL Trigger: CAAAGGGCTCCAGTCTGAGCACCCCCTCCAAGAAAG...CATGTGGTGCACTTCTGACAGACACCAGGGGTTTCTAAGCTTCAGCTCAGGTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CCA 90 bp | CATGGTAGCCCAGAGCTACCCAGGCTCAGAACACTTGGAGAGAGAAGGAGGTTACCATGGTGTCCACCTTaGCCTGCAGTTCCACCTTGT | + |
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Preference number: 4 (lower is better) Translates to: HGSPELPRLRTLGERRRLPWCPP*PAVPPC Trigger: ACAAGGTGGAACTGCAGGCCAAGGTGGACACCATGG...TAACCTCCTTCTCTCTCCAAGTGTTCTGAGCCTGGGTAGCTCTGGGCTACCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | AGAATGCAACAGGGAGGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTGCCCGGTAGGAGGATaGGCTTCCCCCAGAGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: RMQQGGLKRIQEKPRLSHCPVGG*ASPREH Trigger: GTGCTCTCTGGGGGAAGCTCATCCTCCTACCGGGCA...ATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCCTCCCTGTTGCATTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CCA 90 bp | CTACCCAGGCTCAGAACACTTGGAGAGAGAAGGAGGTTAGCTGAGGACACATCTTCTGAGCGGAGTCTCTaGATGAACCGGGTCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LPRLRTLGERRRLAEDTSSERSL*MNRVSS Trigger: TGAGCTGACCCGGTTCATCCAGAGACTCCGCTCAGA...AGATGTGTCCTCAGCTAACCTCCTTCTCTCTCCAAGTGTTCTGAGCCTGGGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CCA 90 bp | GTCAGAAGTGCACCACATGGTAGCCCAGAGCTACCCAGGCTCAGAACACTTGGATATCCTTGTAGTCGCTaGCACTACCTCTGCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: VRSAPHGSPELPRLRTLGYPCSR*HYLCSC Trigger: ACAGGAGCAGAGGTAGTGCCAGCGACTACAAGGATA...TCCAAGTGTTCTGAGCCTGGGTAGCTCTGGGCTACCATGTGGTGCACTTCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR GCA 90 bp | GGACCTGAGCTGAAGCTTAGAAACCCCTGGTGTCTGTCAGAAGTGCACCACATGCACAAACTCATTCTCTaGAGCTGTCCGCCGGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: GPELKLRNPWCLSEVHHMHKLIL*SCPPVD Trigger: ATCAACCGGCGGACAGCTGCAGAGAATGAGTTTGTG...CATGTGGTGCACTTCTGACAGACACCAGGGGTTTCTAAGCTTCAGCTCAGGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | GTCAGAAGTGCACCACATGGTAGCCCAGAGCTACCCAGGCTCAGAACACTTGGACATTTTTGGTGTTTTTaGGGTCATCTCCATGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: VRSAPHGSPELPRLRTLGHFWCF*GHLHGD Trigger: GTCGCCATGGAGATGACCTCAAAAACACCAAAAATG...TCCAAGTGTTCTGAGCCTGGGTAGCTCTGGGCTACCATGTGGTGCACTTCTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR GCA 90 bp | TGGGGTGGGCTCCCAACTCTGAGTTGGTTTTCTGTTAGTCTTCTTCTTGGGTACATTCTCCGGACATCCTaGACTCCTCGCTCTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: WGGLPTLSWFSVSLLLGYILRTS*TPRSPE Trigger: TTCTGGAGAGCGAGGAGTGCAGGATGTCCGGAGAAT...GTACCCAAGAAGAAGACTAACAGAAAACCAACTCAGAGTTGGGAGCCCACCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CCA 90 bp | TTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCCCTGGTTCTGGGTTCGCAGCTCCTGGAACTTaGTCTGGTACAGGGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LKEYKRSQGCPIFPGSGFAAPGT*SGTGPQ Trigger: CTGAGGCCCTGTACCAGACCAAGTTCCAGGAGCTGC...GAACCCAGAACCAGGGAAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | GGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCCCTGGTTCTGGTGCGTTCTCAATCTCTaGGCGGAGTCTCTGGATGAA | + |
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Preference number: 4 (lower is better) Translates to: GLKRIQEKPRLSHFPWFWCVLNL*AESLDE Trigger: TTCATCCAGAGACTCCGCTCAGAGATTGAGAACGCA...CCAGAACCAGGGAAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| 3UTR CAA 72 bp | TTTTCTGTTAGTCTTCTTCTTGGGTACAGCTCTAGCTaGTGTTGTACACAGGAGCTGGGACAAAAGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: FSVSLLLGYSSS*CCTQELGQKLS Trigger: GCTGAGCTTTTGTCCCAGCTCCTGTGTACAACACAAGCTAGAGCTGTACCCAAGAAGAAGACTAACAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR TCA 90 bp | ATGCAACAGGGAGGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTACCGGGTCAGCTCAGTaGTTTCATTTTTGGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: MQQGGLKRIQEKPRLSHFTGSAQ*FHFWCF Trigger: AAAACACCAAAAATGAAATCACTGAGCTGACCCGGT...AAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCCTCCCTGTTGCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | GACGGAGGCAAAGGCTGGTGGAAGGGACAGGCTGGACCTGAGCTGAAGCTTAGAGCAGCTGTCCGCCGGTaGATCTCCTCCTCATACTTC | + |
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Preference number: 5 (lower is better) Translates to: DGGKGWWKGQAGPELKLRAAVRR*ISSSYF Trigger: GAAGTATGAGGAGGAGATCAACCGGCGGACAGCTGC...TCTAAGCTTCAGCTCAGGTCCAGCCTGTCCCTTCCACCAGCCTTTGCCTCCGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS GCA 90 bp | TGGAGCCCTTTGTTAGGGTATCCTTGTAGTCGCTGGCACTACCTCTaGTCCTGTTCTCCCCACCACGGACACTGCACACTCCAGAGATGC | + |
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Preference number: 5 (lower is better) Translates to: WSPLLGYPCSRWHYL*SCSPHHGHCTLQRC Trigger: GCATCTCTGGAGTGTGCAGTGTCCGTGGTGGGGAGAACAGGAGCAGAGGTAGTGCCAGCGACTACAAGGATACCCTAACAAAGGGCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | CTACCCAGGCTCAGAACACTTGGAGAGAGAAGGAGGTTAGCTGAGGACACATCTCATCGGCCACCTTTCTaGGAGGGGGTGCTCAGACTG | + |
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Preference number: 5 (lower is better) Translates to: LPRLRTLGERRRLAEDTSHRPPF*EGVLRL Trigger: CAGTCTGAGCACCCCCTCCAAGAAAGGTGGCCGATG...AGATGTGTCCTCAGCTAACCTCCTTCTCTCTCCAAGTGTTCTGAGCCTGGGTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | TGGGGTGGGCTCCCAACTCTGAGTTGGTTTTCTGTTAGTCTTCTTCTTGGGTACCCACTGAAGCCCCTGTaGCTGGCTCCAGACTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: WGGLPTLSWFSVSLLLGYPLKPL*LAPDLQ Trigger: CTGCAAGTCTGGAGCCAGCAACAGGGGCTTCAGTGG...GTACCCAAGAAGAAGACTAACAGAAAACCAACTCAGAGTTGGGAGCCCACCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | ATGCAACAGGGAGGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTTTGGCCCGGGCATCCTaGAGGGCACTGTCACCTCGC | + |
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Preference number: 5 (lower is better) Translates to: MQQGGLKRIQEKPRLSHFLARAS*RALSPR Trigger: GCGAGGTGACAGTGCCCTCAAGGATGCCCGGGCCAA...AAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCCTCCCTGTTGCAT 53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | GTCAGAAGTGCACCACATGGTAGCCCAGAGCTACCCAGGCTCAGAACACTTGGATCAGACTGGAGCCCTTaGTTAGGGTATCCTTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: VRSAPHGSPELPRLRTLGSDWSP*LGYPCS Trigger: ACTACAAGGATACCCTAACAAAGGGCTCCAGTCTGA...TCCAAGTGTTCTGAGCCTGGGTAGCTCTGGGCTACCATGTGGTGCACTTCTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | GTCAGAAGTGCACCACATGGTAGCCCAGAGCTACCCAGGCTCAGAACACTTGGAGCTTCGAACAGACACTaGAAGAATTTGATGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: VRSAPHGSPELPRLRTLGASNRH*KNLMSW Trigger: CCAGGACATCAAATTCTTCAAGTGTCTGTTCGAAGC...TCCAAGTGTTCTGAGCCTGGGTAGCTCTGGGCTACCATGTGGTGCACTTCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | AGAATGCAACAGGGAGGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTGCAGCTCCTGGAACTaGGTCTGGTACAGGGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: RMQQGGLKRIQEKPRLSHCSSWN*VWYRAS Trigger: TGAGGCCCTGTACCAGACCAAGTTCCAGGAGCTGCA...ATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCCTCCCTGTTGCATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS-3UTR CAA 90 bp | GGGCTTAAAAGAATACAAGAGAAGCCAAGGCTGTCCCATTTTCCCTGGTTCTGGTCATTTTTGGTGTTTTaGAGGTCATCTCCATGGCGA | + |
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Preference number: 5 (lower is better) Translates to: GLKRIQEKPRLSHFPWFWSFLVF*RSSPWR Trigger: TCGCCATGGAGATGACCTCAAAAACACCAAAAATGA...CCAGAACCAGGGAAAATGGGACAGCCTTGGCTTCTCTTGTATTCTTTTAAGCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS GCA 72 bp | TTGTTAGGGTATCCTTGTAGTCGCTGGCACTACCTCTaGTCCTGTTCTCCCCACCACGGACACTGCACACTC | + |
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Preference number: 6 (lower is better) Translates to: LLGYPCSRWHYL*SCSPHHGHCTL Trigger: GAGTGTGCAGTGTCCGTGGTGGGGAGAACAGGAGCAGAGGTAGTGCCAGCGACTACAAGGATACCCTAACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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| CDS CAA 72 bp | CACCTTTCTTGGAGGGGGTGCTCAGACTGGAGCCCTTaGTTAGGGTATCCTTGTAGTCGCTGGCACTACCTC | + |
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Preference number: 6 (lower is better) Translates to: HLSWRGCSDWSP*LGYPCSRWHYL Trigger: GAGGTAGTGCCAGCGACTACAAGGATACCCTAACAAAGGGCTCCAGTCTGAGCACCCCCTCCAAGAAAGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023710.6 |
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