Pregenerated sensors for KRT6B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023041

Ensembl transcript IDs: ENSMUST00000023786.7

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	AAGCGAGAGGACACAGCCTCCTCAGACAGAAGCAGACAGCAGAGGTaGAGGTTCAGTGAAAACACGACCCCGTACACAGGGCACTGCAGC	+
Preference number: 1 (lower is better) Translates to: KREDTASSDRSRQQR*RFSENTTPYTGHCS Trigger: GCTGCAGTGCCCTGTGTACGGGGTCGTGTTTTCACTGAACCTCCACCTCTGCTGTCTGCTTCTGTCTGAGGAGGCTGTGTCCTCTCGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR CCA 90 bp	TGTGTTGTCACAAGTACTGACAGGAAGGTTTATGAGGTTGAAAAATaGGGTTTCCCAGGCCATTGGAAACTAGAAGGGAGTTGTTCATTT	+
Preference number: 1 (lower is better) Translates to: CVVTSTDRKVYEVEK*GFPGHWKLEGSCSF Trigger: AAATGAACAACTCCCTTCTAGTTTCCAATGGCCTGGGAAACCCCATTTTTCAACCTCATAAACCTTCCTGTCAGTACTTGTGACAACACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR TCA 90 bp	GAGTTGTTCATTTCTTTAGTAAGACCCAGACAATCATTTCTAGAATaGAGAGGACTGACACACACTTTACCAGGCAACTCAGAGACAGAG	+
Preference number: 1 (lower is better) Translates to: ELFISLVRPRQSFLE*RGLTHTLPGNSETE Trigger: CTCTGTCTCTGAGTTGCCTGGTAAAGTGTGTGTCAGTCCTCTTCATTCTAGAAATGATTGTCTGGGTCTTACTAAAGAAATGAACAACTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR-3UTR GCA 90 bp	ATCCCAAGCAGACAAAAAGAGAAGCGAGAGGACACAGCCTCCTCAGACAGAAGCCCGTACACAGGGCACTaGAGCCAGGGTATCTGGGGT	+
Preference number: 2 (lower is better) Translates to: IPSRQKEKREDTASSDRSPYTGH*SQGIWG Trigger: ACCCCAGATACCCTGGCTGCAGTGCCCTGTGTACGG...GCTTCTGTCTGAGGAGGCTGTGTCCTCTCGCTTCTCTTTTTGTCTGCTTGGGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR-3UTR CCA 90 bp	ATGAAGCACCAAATGTGTGTGAATCGTGATGTGAGCTCAGAGGATGGCTCAAAATGCAGCCAGGGTATCTaGGGTCTGCAACAAGCTCTG	+
Preference number: 2 (lower is better) Translates to: MKHQMCVNRDVSSEDGSKCSQGI*GLQQAL Trigger: CAGAGCTTGTTGCAGACCCCAGATACCCTGGCTGCA...TTTTGAGCCATCCTCTGAGCTCACATCACGATTCACACACATTTGGTGCTTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR-3UTR TCA 90 bp	TGTGAGCACAGGACTAATGACTGTGTTGTCACAAGTACTGACAGGAAGGTTTATAATGTGTGTGAATCGTaGTGTGAGCTCAGAGGATGG	+
Preference number: 2 (lower is better) Translates to: CEHRTNDCVVTSTDRKVYNVCES*CELRGW Trigger: CCATCCTCTGAGCTCACATCACGATTCACACACATT...ATAAACCTTCCTGTCAGTACTTGTGACAACACAGTCATTAGTCCTGTGCTCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR CAA 90 bp	AAAGAGCAGAGATGGCATCATGTGAGCACAGGACTAATGACTGTGTaGTCACAAGTACTGACAGGAAGGTTTATGAGGTTGAAAAATGGG	+
Preference number: 2 (lower is better) Translates to: KEQRWHHVSTGLMTV*SQVLTGRFMRLKNG Trigger: CCCATTTTTCAACCTCATAAACCTTCCTGTCAGTACTTGTGACAACACAGTCATTAGTCCTGTGCTCACATGATGCCATCTCTGCTCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR-3UTR TCA 90 bp	TTGGAAACTAGAAGGGAGTTGTTCATTTCTTTAGTAAGACCCAGACAATCATTTTCAAAAAGTGAGCAGTaGGATCCCAAGCAGACAAAA	+
Preference number: 2 (lower is better) Translates to: LETRRELFISLVRPRQSFSKSEQ*DPKQTK Trigger: TTTTGTCTGCTTGGGATCTCACTGCTCACTTTTTGA...AAATGATTGTCTGGGTCTTACTAAAGAAATGAACAACTCCCTTCTAGTTTCCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR CCA 72 bp	ACAAGTACTGACAGGAAGGTTTATGAGGTTGAAAAATaGGGTTTCCCAGGCCATTGGAAACTAGAAGGGAGT	+
Preference number: 3 (lower is better) Translates to: TSTDRKVYEVEK*GFPGHWKLEGS Trigger: ACTCCCTTCTAGTTTCCAATGGCCTGGGAAACCCCATTTTTCAACCTCATAAACCTTCCTGTCAGTACTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CCA 90 bp	GACCCCGTACACAGGGCACTGCAGCCAGGGTATCTGGGGTCTGCAACAAGCTCTTGTAGCTCTTCCTGCTaGAGGAGGCGCTGGTGGTGT	+
Preference number: 4 (lower is better) Translates to: DPVHRALQPGYLGSATSSCSSSC*RRRWWC Trigger: ACACCACCAGCGCCTCCTCCAGCAGGAAGAGCTACA...AGAGCTTGTTGCAGACCCCAGATACCCTGGCTGCAGTGCCCTGTGTACGGGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR TCA 90 bp	CAGACAAAAAGAGAAGCGAGAGGACACAGCCTCCTCAGACAGAAGCAGACAGCAGGCCACCAGAAGAGCTaGGGCCACCTCCGATGGCTC	+
Preference number: 4 (lower is better) Translates to: QTKREARGHSLLRQKQTAGHQKS*GHLRWL Trigger: GAGCCATCGGAGGTGGCCTCAGCTCTTCTGGTGGCC...TGCTGTCTGCTTCTGTCTGAGGAGGCTGTGTCCTCTCGCTTCTCTTTTTGTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR TCA 90 bp	AGGACTGACACACACTTTACCAGGCAACTCAGAGACAGAGGTAGGGAGGGAGGATCAGCCCGACTTCTCTaGGCAATGTCCTCATACTGG	+
Preference number: 4 (lower is better) Translates to: RTDTHFTRQLRDRGREGGSARLL*AMSSYW Trigger: CCAGTATGAGGACATTGCTCAGAGAAGTCGGGCTGA...TCCTCCCTCCCTACCTCTGTCTCTGAGTTGCCTGGTAAAGTGTGTGTCAGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR GCA 90 bp	CACCAAATGTGTGTGAATCGTGATGTGAGCTCAGAGGATGGCTCAAAAAGTGAGGCCTGTAGCTCTTCCTaGTGGAGGAGGCGCTGGTGG	+
Preference number: 4 (lower is better) Translates to: HQMCVNRDVSSEDGSKSEACSSS*WRRRWW Trigger: CCACCAGCGCCTCCTCCAGCAGGAAGAGCTACAGGC...CTCACTTTTTGAGCCATCCTCTGAGCTCACATCACGATTCACACACATTTGGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR GCA 90 bp	AGCATGAAGCACCAAATGTGTGTGAATCGTGATGTGAGCTCAGAGGATGGCTCACAAGGCCATGGCTGCTaGCATAGGAGTAGCTGCTGC	+
Preference number: 4 (lower is better) Translates to: SMKHQMCVNRDVSSEDGSQGHGC*HRSSCC Trigger: GCAGCAGCTACTCCTATGGCAGCAGCCATGGCCTTG...TGAGCCATCCTCTGAGCTCACATCACGATTCACACACATTTGGTGCTTCATGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR TCA 90 bp	AGCATGAAGCACCAAATGTGTGTGAATCGTGATGTGAGCTCAGAGGATGGCTCACCACGGTGGCTAGTTTaGCTCTTGATGGTGGTTTTG	+
Preference number: 4 (lower is better) Translates to: SMKHQMCVNRDVSSEDGSPRWLV*LLMVVL Trigger: CAAAACCACCATCAAGAGTCAAACTAGCCACCGTGG...TGAGCCATCCTCTGAGCTCACATCACGATTCACACACATTTGGTGCTTCATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR TCA 90 bp	GAGATGGCATCATGTGAGCACAGGACTAATGACTGTGTTGTCACAAGTACTGACGCACCACAGAGATGTTaGCTGGTCCAACACCTTCAC	+
Preference number: 4 (lower is better) Translates to: EMASCEHRTNDCVVTSTDAPQRC*LVQHLH Trigger: GTGAAGGTGTTGGACCAGTCAACATCTCTGTGGTGC...GTCAGTACTTGTGACAACACAGTCATTAGTCCTGTGCTCACATGATGCCATCTC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR GCA 90 bp	TTGGAAACTAGAAGGGAGTTGTTCATTTCTTTAGTAAGACCCAGACAATCATTTATGGTGGGGTCGATTTaGACGTTCAGAGGGGTGAGG	+
Preference number: 4 (lower is better) Translates to: LETRRELFISLVRPRQSFMVGSI*TFRGVR Trigger: CCTCACCCCTCTGAACGTGCAAATCGACCCCACCAT...AAATGATTGTCTGGGTCTTACTAAAGAAATGAACAACTCCCTTCTAGTTTCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
3UTR CAA 72 bp	ATGGGGTTTCCCAGGCCATTGGAAACTAGAAGGGAGTaGTTCATTTCTTTAGTAAGACCCAGACAATCATTT	+
Preference number: 4 (lower is better) Translates to: MGFPRPLETRRE*FISLVRPRQSF Trigger: AAATGATTGTCTGGGTCTTACTAAAGAAATGAACAACTCCCTTCTAGTTTCCAATGGCCTGGGAAACCCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CAA 90 bp	GACCCCGTACACAGGGCACTGCAGCCAGGGTATCTGGGGTCTGCAACAAGCTCTTGCACCACAGAGATGTaGACTGGTCCAACACCTTCA	+
Preference number: 5 (lower is better) Translates to: DPVHRALQPGYLGSATSSCTTEM*TGPTPS Trigger: TGAAGGTGTTGGACCAGTCAACATCTCTGTGGTGCA...AGAGCTTGTTGCAGACCCCAGATACCCTGGCTGCAGTGCCCTGTGTACGGGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CAA 90 bp	ACAAGGAAACAAAGAGCAGAGATGGCATCATGTGAGCACAGGACTAATGACTGTCAGCTCCTCCACACATaGCACTGGAGCCACCGCTGC	+
Preference number: 5 (lower is better) Translates to: TRKQRAEMASCEHRTNDCQLLHT*HWSHRC Trigger: GCAGCGGTGGCTCCAGTGCAATGTGTGGAGGAGCTG...ACAGTCATTAGTCCTGTGCTCACATGATGCCATCTCTGCTCTTTGTTTCCTTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CAA 90 bp	ACAAGTACTGACAGGAAGGTTTATGAGGTTGAAAAATGGGGTTTCCCAGGCCATGATGGTGGGGTCGATTaGCACGTTCAGAGGGGTGAG	+
Preference number: 5 (lower is better) Translates to: TSTDRKVYEVEKWGFPGHDGGVD*HVQRGE Trigger: CTCACCCCTCTGAACGTGCAAATCGACCCCACCATC...ATGGCCTGGGAAACCCCATTTTTCAACCTCATAAACCTTCCTGTCAGTACTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CAA 90 bp	AAACAAAGAGCAGAGATGGCATCATGTGAGCACAGGACTAATGACTGTGTTGTCGCGCTGGTGGTGTATTaGATGGTGGAAGAGCTGAGG	+
Preference number: 5 (lower is better) Translates to: KQRAEMASCEHRTNDCVVALVVY*MVEELR Trigger: CCTCAGCTCTTCCACCATCAAATACACCACCAGCGC...GACAACACAGTCATTAGTCCTGTGCTCACATGATGCCATCTCTGCTCTTTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CAA 90 bp	ATGAAGCACCAAATGTGTGTGAATCGTGATGTGAGCTCAGAGGATGGCTCAAAAGCCACGGTGGCTAGTTaGACTCTTGATGGTGGTTTT	+
Preference number: 5 (lower is better) Translates to: MKHQMCVNRDVSSEDGSKATVAS*TLDGGF Trigger: AAAACCACCATCAAGAGTCAAACTAGCCACCGTGGC...TTTTGAGCCATCCTCTGAGCTCACATCACGATTCACACACATTTGGTGCTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CAA 90 bp	AGCACAGGACTAATGACTGTGTTGTCACAAGTACTGACAGGAAGGTTTATGAGGATCAGCAATAGCAGCTaGCAGGTTGGCACACTGCTT	+
Preference number: 5 (lower is better) Translates to: STGLMTVLSQVLTGRFMRISNSS*QVGTLL Trigger: AAGCAGTGTGCCAACCTGCAAGCTGCTATTGCTGAT...CCTCATAAACCTTCCTGTCAGTACTTGTGACAACACAGTCATTAGTCCTGTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023786.7
CDS-3UTR CAA 90 bp	AAGGTTTATGAGGTTGAAAAATGGGGTTTCCCAGGCCATTGGAAACTAGAAGGGATAACTCTCAGGAAGTaGATCTCGTCTGCAAGACTA	+
Preference number: 5 (lower is better) Translates to: KVYEVEKWGFPGHWKLEGITLRK*ISSARL Trigger: TAGTCTTGCAGACGAGATCAACTTCCTGAGAGTTAT...CCCTTCTAGTTTCCAATGGCCTGGGAAACCCCATTTTTCAACCTCATAAACCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023786.7