Pregenerated sensors for KRT6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058354Ensembl transcript IDs: ENSMUST00000023788.8
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGGCAGGAGCCTGGCAACCAAATACAACATGAAGCACCAAATGTaGGTGAATTGTGATGTAAGCTCACAGGATGACTATAAAGAGATG | + |
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Preference number: 1 (lower is better) Translates to: GGRSLATKYNMKHQM*VNCDVSSQDDYKEM Trigger: CATCTCTTTATAGTCATCCTGTGAGCTTACATCACAATTCACTCACATTTGGTGCTTCATGTTGTATTTGGTTGCCAGGCTCCTGCCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR-3UTR TCA 90 bp | CAGAAATATGAGCAAAATGACACAGCCTCCTCAGTCCCAAGAAGGGAGCAGAGGCTGAACTCGGGGCTCTaGGCACGGGATTCTGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: QKYEQNDTASSVPRREQRLNSGL*ARDSAA Trigger: GGCTGCAGAATCCCGTGCTCAGAGCCCCGAGTTCAG...CCTCTGCTCCCTTCTTGGGACTGAGGAGGCTGTGTCATTTTGCTCATATTTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR-3UTR TCA 90 bp | ACCAGTGACGGGGCAGTCACAGTTACTGACAGGGAGGGTTATGATGTTGAGAGAGGGATTCTGCAGCCATaGCATCTGGGACCAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: TSDGAVTVTDREGYDVERGILQP*HLGPET Trigger: TGTCTCTGGTCCCAGATGTCATGGCTGCAGAATCCC...TCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTGCCCCGTCACTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR CAA 90 bp | CCAGTGACGGGGCAGTCACAGTTACTGACAGGGAGGGTTATGATGTaGAGAGATGGGGTTTCTCAGGCCATTAGAAACTCACAGGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: PVTGQSQLLTGRVMM*RDGVSQAIRNSQGA Trigger: AGCTCCCTGTGAGTTTCTAATGGCCTGAGAAACCCCATCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTGCCCCGTCACTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR-3UTR CCA 90 bp | GATGACTATAAAGAGATGAGCAGTGGGGACCCATGGGGACAGAAATATGAGCAATGCAGCCATGACATCTaGGACCAGAGACAAGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: DDYKEMSSGDPWGQKYEQCSHDI*DQRQAL Trigger: AAGAGCTTGTCTCTGGTCCCAGATGTCATGGCTGCA...TTGCTCATATTTCTGTCCCCATGGGTCCCCACTGCTCATCTCTTTATAGTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR CAA 90 bp | GGGGTTTCTCAGGCCATTAGAAACTCACAGGGAGCTGCTCATTACTaGAGTAGGACCCAGACAATGATTTCAAAAATGAAGGTGTCGGAA | + |
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Preference number: 2 (lower is better) Translates to: GVSQAIRNSQGAAHY*SRTQTMISKMKVSE Trigger: TTCCGACACCTTCATTTTTGAAATCATTGTCTGGGTCCTACTCAAGTAATGAGCAGCTCCCTGTGAGTTTCTAATGGCCTGAGAAACCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR-3UTR CCA 90 bp | AACTCACAGGGAGCTGCTCATTACTTGAGTAGGACCCAGACAATGATTTCAAAAAGCAGTGGGGACCCATaGGGACAGAAATATGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: NSQGAAHYLSRTQTMISKSSGDP*GQKYEQ Trigger: TTGCTCATATTTCTGTCCCCATGGGTCCCCACTGCT...TTTTGAAATCATTGTCTGGGTCCTACTCAAGTAATGAGCAGCTCCCTGTGAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR TCA 72 bp | GGGTCCAGGGAGGAGAAGCCCCTGAACTCGGGGCTCTaGGCACGGGATTCTGCAGCCATGACATCTGGGACC | + |
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Preference number: 3 (lower is better) Translates to: GSREEKPLNSGL*ARDSAAMTSGT Trigger: GGTCCCAGATGTCATGGCTGCAGAATCCCGTGCTCAGAGCCCCGAGTTCAGGGGCTTCTCCTCCCTGGACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR GCA 72 bp | GAAGCCCCTGAACTCGGGGCTCTGAGCACGGGATTCTaGAGCCATGACATCTGGGACCAGAGACAAGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: EAPELGALSTGF*SHDIWDQRQAL Trigger: AAGAGCTTGTCTCTGGTCCCAGATGTCATGGCTGCAGAATCCCGTGCTCAGAGCCCCGAGTTCAGGGGCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR TCA 72 bp | GAAGCCAAGAGCATCAAGGAAAGCAAAGACATCACATaGGCAGAAACTTACATCACAGGACCAGTGACGGGG | + |
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Preference number: 3 (lower is better) Translates to: EAKSIKESKDIT*AETYITGPVTG Trigger: CCCCGTCACTGGTCCTGTGATGTAAGTTTCTGCTCATGTGATGTCTTTGCTTTCCTTGATGCTCTTGGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR CCA 72 bp | CAGGATGACTATAAAGAGATGAGCAGTGGGGACCCATaGGGACAGAAATATGAGCAAAATGACACAGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: QDDYKEMSSGDP*GQKYEQNDTAS Trigger: GGAGGCTGTGTCATTTTGCTCATATTTCTGTCCCCATGGGTCCCCACTGCTCATCTCTTTATAGTCATCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | ACCAGTGACGGGGCAGTCACAGTTACTGACAGGGAGGGTTATGATGTTGAGAGACCAGGCCTAAGCTGCTaGTGGCACCCCCGGCACTGC | + |
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Preference number: 4 (lower is better) Translates to: TSDGAVTVTDREGYDVERPGLSC*WHPRHC Trigger: GCAGTGCCGGGGGTGCCAGCAGCAGCTTAGGCCTGG...TCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTGCCCCGTCACTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR CCA 90 bp | GGGGCTCTGAGCACGGGATTCTGCAGCCATGACATCTGGGACCAGAGACAAGCTAGCCGCTGGACACGGTaGACTGCACCACAGAGATGT | + |
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Preference number: 4 (lower is better) Translates to: GALSTGFCSHDIWDQRQASRWTR*TAPQRC Trigger: ACATCTCTGTGGTGCAGTCCACCGTGTCCAGCGGCT...AGCTTGTCTCTGGTCCCAGATGTCATGGCTGCAGAATCCCGTGCTCAGAGCCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | GGGGCTCTGAGCACGGGATTCTGCAGCCATGACATCTGGGACCAGAGACAAGCTCTGGACACGGTGGACTaGACCACAGAGATGTTGACT | + |
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Preference number: 4 (lower is better) Translates to: GALSTGFCSHDIWDQRQALDTVD*TTEMLT Trigger: AGTCAACATCTCTGTGGTGCAGTCCACCGTGTCCAG...AGCTTGTCTCTGGTCCCAGATGTCATGGCTGCAGAATCCCGTGCTCAGAGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR CCA 90 bp | AACTTACATCACAGGACCAGTGACGGGGCAGTCACAGTTACTGACAGGGAGGGTCACTGCCATAGCCGCTaGACACGGTGGACTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: NLHHRTSDGAVTVTDREGHCHSR*TRWTAP Trigger: TGGTGCAGTCCACCGTGTCCAGCGGCTATGGCAGTG...ACCCTCCCTGTCAGTAACTGTGACTGCCCCGTCACTGGTCCTGTGATGTAAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | GGGGCTCTGAGCACGGGATTCTGCAGCCATGACATCTGGGACCAGAGACAAGCTCTTCACCATTCAACCTaGACTCCTCTCCTTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GALSTGFCSHDIWDQRQALHHST*TPLLPA Trigger: TGCTGGAAGGAGAGGAGTGCAGGTTGAATGGTGAAG...AGCTTGTCTCTGGTCCCAGATGTCATGGCTGCAGAATCCCGTGCTCAGAGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR CCA 90 bp | GCAGTCACAGTTACTGACAGGGAGGGTTATGATGTTGAGAGATGGGGTTTCTCAGGCCTAAGCTGCTGCTaGCACCCCCGGCACTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: AVTVTDREGYDVERWGFSGLSCC*HPRHCH Trigger: ATGGCAGTGCCGGGGGTGCCAGCAGCAGCTTAGGCC...TGAGAAACCCCATCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | GGAGAAGCCCCTGAACTCGGGGCTCTGAGCACGGGATTCTGCAGCCATGACATCCATCTGAGACAGTTCTaGTTCATAGAGAGCTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: GEAPELGALSTGFCSHDIHLRQF*FIESSQ Trigger: TTGAGAGCTCTCTATGAAGCAGAACTGTCTCAGATG...GATGTCATGGCTGCAGAATCCCGTGCTCAGAGCCCCGAGTTCAGGGGCTTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | ACCAGTGACGGGGCAGTCACAGTTACTGACAGGGAGGGTTATGATGTTGAGAGAGCCTGTAGCTCTTCTTaGTGGAGGAGGTGGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: TSDGAVTVTDREGYDVERACSSS*WRRWWC Trigger: ACACCACCACCTCCTCCAGCAAGAAGAGCTACAGGC...TCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTGCCCCGTCACTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR CCA 90 bp | GAACTCGGGGCTCTGAGCACGGGATTCTGCAGCCATGACATCTGGGACCAGAGATCCTCATATTTAGTCTaGTACCAGGACTCAGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: ELGALSTGFCSHDIWDQRSSYLV*YQDSAS Trigger: TGAAGCTGAGTCCTGGTACCAGACTAAATATGAGGA...TCTCTGGTCCCAGATGTCATGGCTGCAGAATCCCGTGCTCAGAGCCCCGAGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | ACAATGATTTCAAAAATGAAGGTGTCGGAAACACCCTGTCACAGGCAGCCTCAGCAAGGCCATGGCTGCTaGTATAGGAGTAGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: TMISKMKVSETPCHRQPQQGHGC*YRSSCC Trigger: GCAGCAGCTACTCCTATAGCAGCAGCCATGGCCTTG...CTGAGGCTGCCTGTGACAGGGTGTTTCCGACACCTTCATTTTTGAAATCATTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | GATGACTATAAAGAGATGAGCAGTGGGGACCCATGGGGACAGAAATATGAGCAATCCTCCACTGTGTCCTaGATGTTCCTCAGCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: DDYKEMSSGDPWGQKYEQSSTVS*MFLSSE Trigger: CTCAGAGCTGAGGAACATGCAGGACACAGTGGAGGA...TTGCTCATATTTCTGTCCCCATGGGTCCCCACTGCTCATCTCTTTATAGTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | GCAGTCACAGTTACTGACAGGGAGGGTTATGATGTTGAGAGATGGGGTTTCTCACTGCCAGCTGTGACCTaGAGCTCCTCATATTTAGTC | + |
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Preference number: 4 (lower is better) Translates to: AVTVTDREGYDVERWGFSLPAVT*SSSYLV Trigger: GACTAAATATGAGGAGCTGCAGGTCACAGCTGGCAG...TGAGAAACCCCATCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | GATGACTATAAAGAGATGAGCAGTGGGGACCCATGGGGACAGAAATATGAGCAATCAGCAATAGCAGCTTaGAGGTTGGCACACTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: DDYKEMSSGDPWGQKYEQSAIAA*RLAHCF Trigger: GAAGCAGTGTGCCAACCTGCAAGCTGCTATTGCTGA...TTGCTCATATTTCTGTCCCCATGGGTCCCCACTGCTCATCTCTTTATAGTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | ACCAGTGACGGGGCAGTCACAGTTACTGACAGGGAGGGTTATGATGTTGAGAGATTTCATCTTCATATTTaGTCTTGTAGTCCTCCACTG | + |
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Preference number: 4 (lower is better) Translates to: TSDGAVTVTDREGYDVERFHLHI*SCSPPL Trigger: CAGTGGAGGACTACAAGAGCAAATATGAAGATGAAA...TCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTGCCCCGTCACTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR CCA 90 bp | ACGAGGAAGCCAAGAGCATCAAGGAAAGCAAAGACATCACATGAGCAGAAACTTTGTAGCTCTTCTTGCTaGAGGAGGTGGTGGTGTATT | + |
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Preference number: 4 (lower is better) Translates to: TRKPRASRKAKTSHEQKLCSSSC*RRWWCI Trigger: AATACACCACCACCTCCTCCAGCAAGAAGAGCTACA...AAGTTTCTGCTCATGTGATGTCTTTGCTTTCCTTGATGCTCTTGGCTTCCTCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR GCA 90 bp | AACTCACAGGGAGCTGCTCATTACTTGAGTAGGACCCAGACAATGATTTCAAAAAGGTTGCTGATGTACTaGTCAAACATAGGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: NSQGAAHYLSRTQTMISKRLLMY*SNIGSR Trigger: CCTGGAGCCTATGTTTGAGCAGTACATCAGCAACCT...TTTTGAAATCATTGTCTGGGTCCTACTCAAGTAATGAGCAGCTCCCTGTGAGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR TCA 90 bp | ACAATGATTTCAAAAATGAAGGTGTCGGAAACACCCTGTCACAGGCAGCCTCAGGAGCTCTCAAGAAGTTaGTATCATCTGTTAGACTGT | + |
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Preference number: 4 (lower is better) Translates to: TMISKMKVSETPCHRQPQELSRS*YHLLDC Trigger: ACAGTCTAACAGATGATATCAACTTCTTGAGAGCTC...CTGAGGCTGCCTGTGACAGGGTGTTTCCGACACCTTCATTTTTGAAATCATTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| 3UTR CAA 72 bp | CAGGCCATTAGAAACTCACAGGGAGCTGCTCATTACTaGAGTAGGACCCAGACAATGATTTCAAAAATGAAG | + |
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Preference number: 4 (lower is better) Translates to: QAIRNSQGAAHY*SRTQTMISKMK Trigger: CTTCATTTTTGAAATCATTGTCTGGGTCCTACTCAAGTAATGAGCAGCTCCCTGTGAGTTTCTAATGGCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS TCA 90 bp | CACTGCCATAGCCGCTGGACACGGTGGACTGCACCACAGAGATGTTaGCTGGTCCAACACCTTCACCATTCAACCTGCACTCCTCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: HCHSRWTRWTAPQRC*LVQHLHHSTCTPLL Trigger: AAGGAGAGGAGTGCAGGTTGAATGGTGAAGGTGTTGGACCAGTCAACATCTCTGTGGTGCAGTCCACCGTGTCCAGCGGCTATGGCAGTG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR CAA 90 bp | ACAATGATTTCAAAAATGAAGGTGTCGGAAACACCCTGTCACAGGCAGCCTCAGGATGGTGGGGTCAATTaGCAGGTTCAGGGGTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: TMISKMKVSETPCHRQPQDGGVN*QVQGCE Trigger: CTCACACCCCTGAACCTGCAAATTGACCCCACCATC...CTGAGGCTGCCTGTGACAGGGTGTTTCCGACACCTTCATTTTTGAAATCATTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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| CDS-3UTR CAA 90 bp | CAGTCACAGTTACTGACAGGGAGGGTTATGATGTTGAGAGATGGGGTTTCTCAGAGAGCTCTCAAGAAGTaGATATCATCTGTTAGACTG | + |
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Preference number: 5 (lower is better) Translates to: QSQLLTGRVMMLRDGVSQRALKK*ISSVRL Trigger: CAGTCTAACAGATGATATCAACTTCTTGAGAGCTCT...CTGAGAAACCCCATCTCTCAACATCATAACCCTCCCTGTCAGTAACTGTGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023788.8 |
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