Pregenerated sensors for KRT5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061527Ensembl transcript IDs: ENSMUST00000023709.7
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCGTTCCCTTCCGGGAACCAAAGCATGTGGTTCTGCAGCAGGCATaGTCTAGACTACTCTCCAGAAAAAGGAAACGTGGCCTGGGAGAC | + |
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Preference number: 1 (lower is better) Translates to: FVPFREPKHVVLQQA*SRLLSRKRKRGLGD Trigger: GTCTCCCAGGCCACGTTTCCTTTTTCTGGAGAGTAGTCTAGACCATGCCTGCTGCAGAACCACATGCTTTGGTTCCCGGAAGGGAACGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR CCA 90 bp | GAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTaGTTCTGCAGCAGGCATGGTCTAGACTACTCTCCAGAAAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: EARGWDSFPSGNQSM*FCSRHGLDYSPEKG Trigger: TCCTTTTTCTGGAGAGTAGTCTAGACCATGCCTGCTGCAGAACCACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR CCA 90 bp | ACATGTATAGGTGCTGACGTGCAACACAAATGTAGAACTGAGCCATaGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAG | + |
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Preference number: 1 (lower is better) Translates to: TCIGADVQHKCRTEP*GGQRLGFVPFREPK Trigger: CTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGGCTCAGTTCTACATTTGTGTTGCACGTCAGCACCTATACATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR GCA 90 bp | AGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGGTTCTaGAGCAGGCATGGTCTAGACTACTCTCCAGAAAAAGGAAACGTG | + |
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Preference number: 1 (lower is better) Translates to: RGWDSFPSGNQSMWF*SRHGLDYSPEKGNV Trigger: CACGTTTCCTTTTTCTGGAGAGTAGTCTAGACCATGCCTGCTGCAGAACCACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR CCA 90 bp | GTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCTGCAACATTTTaGGGTCTGGGTCACCAAAGAACATGTATAGGTGCTGACGTGCAA | + |
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Preference number: 1 (lower is better) Translates to: VGMGFCFGGLHSATF*GLGHQRTCIGADVQ Trigger: TTGCACGTCAGCACCTATACATGTTCTTTGGTGACCCAGACCCCAAAATGTTGCAGAATGTAAGCCACCAAAGCAGAACCCCATCCCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR-3UTR TCA 90 bp | AATTTAGGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCGCCCGGGGCTGCCCGTaGGGACCAGGGTCTTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: NLGGYLGRDGVLLWWLTFARGCP*GPGSCS Trigger: GCTGCAAGACCCTGGTCCTCACGGGCAGCCCCGGGC...GAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACCTAAATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR-3UTR GCA 90 bp | GGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCTGCAACCGTGGCCTGGGAGACTaGCTAAAAGAAGCAGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: GGYLGRDGVLLWWLTFCNRGLGD*LKEAVS Trigger: AGAGACTGCTTCTTTTAGGCAGTCTCCCAGGCCACG...GTTGCAGAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR-3UTR CCA 90 bp | GGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCTGCAACGGGAACCAAAGCATGTaGTTCTGCAGCAGGCATGGT | + |
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Preference number: 2 (lower is better) Translates to: GGYLGRDGVLLWWLTFCNGNQSM*FCSRHG Trigger: ACCATGCCTGCTGCAGAACCACATGCTTTGGTTCCC...GTTGCAGAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR-3UTR CCA 90 bp | GGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCTGCAACGTTCTGCAGCAGGCATaGTCTAGACTACTCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: GGYLGRDGVLLWWLTFCNVLQQA*SRLLSR Trigger: TCTGGAGAGTAGTCTAGACCATGCCTGCTGCAGAAC...GTTGCAGAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR-3UTR CCA 90 bp | ATAGGTGCTGACGTGCAACACAAATGTAGAACTGAGCCATGGGGAGGCCAGAGGCAGAAAAAGGAAACGTaGCCTGGGAGACTGCCTAAA | + |
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Preference number: 2 (lower is better) Translates to: IGADVQHKCRTEPWGGQRQKKET*PGRLPK Trigger: TTTAGGCAGTCTCCCAGGCCACGTTTCCTTTTTCTG...CCTCTGGCCTCCCCATGGCTCAGTTCTACATTTGTGTTGCACGTCAGCACCTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR CCA 72 bp | GGTGCTGACGTGCAACACAAATGTAGAACTGAGCCATaGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGG | + |
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Preference number: 3 (lower is better) Translates to: GADVQHKCRTEP*GGQRLGFVPFR Trigger: CCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGGCTCAGTTCTACATTTGTGTTGCACGTCAGCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR CCA 72 bp | GGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTaGTTCTGCAGCAGGCATGGTCTAGACTACTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: GWDSFPSGNQSM*FCSRHGLDYSP Trigger: TGGAGAGTAGTCTAGACCATGCCTGCTGCAGAACCACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR CCA 72 bp | TTCCGGGAACCAAAGCATGTGGTTCTGCAGCAGGCATaGTCTAGACTACTCTCCAGAAAAAGGAAACGTGGC | + |
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Preference number: 3 (lower is better) Translates to: FREPKHVVLQQA*SRLLSRKRKRG Trigger: GCCACGTTTCCTTTTTCTGGAGAGTAGTCTAGACCATGCCTGCTGCAGAACCACATGCTTTGGTTCCCGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR GCA 72 bp | GATTCGTTCCCTTCCGGGAACCAAAGCATGTGGTTCTaGAGCAGGCATGGTCTAGACTACTCTCCAGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: DSFPSGNQSMWF*SRHGLDYSPEK Trigger: TTTTTCTGGAGAGTAGTCTAGACCATGCCTGCTGCAGAACCACATGCTTTGGTTCCCGGAAGGGAACGAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| 3UTR CCA 72 bp | GGGTTCTGCTTTGGTGGCTTACATTCTGCAACATTTTaGGGTCTGGGTCACCAAAGAACATGTATAGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: GFCFGGLHSATF*GLGHQRTCIGA Trigger: AGCACCTATACATGTTCTTTGGTGACCCAGACCCCAAAATGTTGCAGAATGTAAGCCACCAAAGCAGAACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR TCA 90 bp | CCATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGTGGCAGAGGCGGCGCTaGAAGAGCGGCTGCCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: PWGGQRLGFVPFREPKHVWQRRR*KSGCPH Trigger: GTGGGGGCAGCCGCTCTTTCAGCGCCGCCTCTGCCA...CACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR GCA 90 bp | GTCTCTGTGGGCCCGGGGCTGCCCGTGAGGACCAGGGTCTTGCAGCAGGCTCTTCAGCCTCTGTTCGGCTaGGGTTGGCAATGTCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: VSVGPGLPVRTRVLQQALQPLFG*GWQCPR Trigger: ACGAGGACATTGCCAACCGCAGCCGAACAGAGGCTG...AAGAGCCTGCTGCAAGACCCTGGTCCTCACGGGCAGCCCCGGGCCCACAGAGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR TCA 90 bp | GTCTCTGTGGGCCCGGGGCTGCCCGTGAGGACCAGGGTCTTGCAGCAGGCTCTTAAGCTCATGCCTCCTTaGCTGCTGCCTGCACTGAAG | + |
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Preference number: 4 (lower is better) Translates to: VSVGPGLPVRTRVLQQALKLMPP*LLPALK Trigger: CTTCAGTGCAGGCAGCAGTCAAGGAGGCATGAGCTT...AAGAGCCTGCTGCAAGACCCTGGTCCTCACGGGCAGCCCCGGGCCCACAGAGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR TCA 90 bp | CCATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGCGAAGGTCATCGCCATaGCGGCCAGCTGTCTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: PWGGQRLGFVPFREPKHVRRSSP*RPAVCC Trigger: GCAACAGACAGCTGGCCGTCATGGCGATGACCTTCG...CACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR GCA 90 bp | CCATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGTCCTTGACTGCTGCCTaGACTGAAGCCAGAGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: PWGGQRLGFVPFREPKHVSLTAA*TEARAP Trigger: GGGGGCTCTGGCTTCAGTGCAGGCAGCAGTCAAGGA...CACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR TCA 90 bp | CCATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGCACCAAATTGGTTCCTaGAGCTGCCTCCGCCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: PWGGQRLGFVPFREPKHVHQIGS*SCLRQN Trigger: GTTCTGGCGGAGGCAGCTTCAGGAACCAATTTGGTG...CACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR GCA 90 bp | CCATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGCGGCCAGCTGTCTGTTaGAGCTCCTCATACTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: PWGGQRLGFVPFREPKHVRPAVC*SSSYLV Trigger: GACCAAGTATGAGGAGCTGCAACAGACAGCTGGCCG...CACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR GCA 90 bp | ACTACTCTCCAGAAAAAGGAAACGTGGCCTGGGAGACTGCCTAAAAGAAGCAGTTGTACAGGCTCCGGCTaGCATAGCCCCCGGCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: TTLQKKETWPGRLPKRSSCTGSG*HSPRLH Trigger: GTGGAGCCGGGGGCTATGGCAGCCGGAGCCTGTACA...ACTGCTTCTTTTAGGCAGTCTCCCAGGCCACGTTTCCTTTTTCTGGAGAGTAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR GCA 90 bp | GGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCTGCAACCACTGCCAACACCAATaGTGCTGCCTCCTCCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GGYLGRDGVLLWWLTFCNHCQHQ*CCLLRS Trigger: GCTACGGAGGAGGCAGCAGCATTGGTGTTGGCAGTG...GTTGCAGAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR GCA 90 bp | GGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCTGCAACCACTGCCGAAGCTCATaGCTCCTTGACTGCTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: GGYLGRDGVLLWWLTFCNHCRSS*LLDCCL Trigger: CAGGCAGCAGTCAAGGAGGCATGAGCTTCGGCAGTG...GTTGCAGAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CCA 90 bp | ATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGGTGCAGCTCCTCATACTTaGTCTGGTACCAGGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: MGRPEVGIRSLPGTKACGAAPHT*SGTRTQ Trigger: CTGAGTCCTGGTACCAGACCAAGTATGAGGAGCTGC...ACCACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CCA 90 bp | CCATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGCAGAGATCTCGTGCTTaGTGTTTCGAAGGTCATCGC | + |
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Preference number: 4 (lower is better) Translates to: PWGGQRLGFVPFREPKHVQRSRA*CFEGHR Trigger: GCGATGACCTTCGAAACACCAAGCACGAGATCTCTG...CACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR TCA 90 bp | GGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCTGCAACTGTTTCTGGCATCTTTaGGAGCCAGCTCCCCGCGTT | + |
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Preference number: 4 (lower is better) Translates to: GGYLGRDGVLLWWLTFCNCFWHL*EPAPRV Trigger: AACGCGGGGAGCTGGCTCTCAAAGATGCCAGAAACA...GTTGCAGAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR TCA 90 bp | TCTAGACTACTCTCCAGAAAAAGGAAACGTGGCCTGGGAGACTGCCTAAAAGAAAAGCACCCCCAAGGCTaGTCCTGCCACCACCACCAC | + |
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Preference number: 4 (lower is better) Translates to: SRLLSRKRKRGLGDCLKEKHPQG*SCHHHH Trigger: GTGGTGGTGGTGGCAGGATCAGCCTTGGGGGTGCTT...TTCTTTTAGGCAGTCTCCCAGGCCACGTTTCCTTTTTCTGGAGAGTAGTCTAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR TCA 90 bp | TGTATAGGTGCTGACGTGCAACACAAATGTAGAACTGAGCCATGGGGAGGCCAGTGGTGGAGACAAATTTaGCACTGGAGCCGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: CIGADVQHKCRTEPWGGQWWRQI*HWSRCH Trigger: GTGGCAGCGGCTCCAGTGTCAAATTTGTCTCCACCA...CTGGCCTCCCCATGGCTCAGTTCTACATTTGTGTTGCACGTCAGCACCTATACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR GCA 90 bp | ACGTGCAACACAAATGTAGAACTGAGCCATGGGGAGGCCAGAGGTTGGGATTCGCAAAACCAAATCCACTaGCGGCTCCTCCTCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: TCNTNVELSHGEARGWDSQNQIH*RLLLQS Trigger: GCTTTGGAGGAGGAGCCGGCAGTGGATTTGGTTTTG...CGAATCCCAACCTCTGGCCTCCCCATGGCTCAGTTCTACATTTGTGTTGCACGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CCA 90 bp | AATTTAGGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCCGTACGAGAGACAGATaGGGTGATGGCAGAGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: NLGGYLGRDGVLLWWLTFRTRDR*GDGRGG Trigger: GCCGCCTCTGCCATCACCCCATCTGTCTCTCGTACG...GAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACCTAAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CCA 90 bp | GAACCAGGACAGAATTTAGGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGGCTCAGCTTCAGCAATaGCGTTCTGGAGGTTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: EPGQNLGGYLGRDGVLLWAQLQQ*RSGGWH Trigger: GTGCCAACCTCCAGAACGCCATTGCTGAAGCTGAGC...CCAAAGCAGAACCCCATCCCTACCCAGATACCCACCTAAATTCTGTCCTGGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CCA 90 bp | AATTTAGGTGGGTATCTGGGTAGGGATGGGGTTCTGCTTTGGTGGCTTACATTCCCACCAGCACCAAATTaGTTCCTGAAGCTGCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: NLGGYLGRDGVLLWWLTFPPAPN*FLKLPP Trigger: CGGAGGCAGCTTCAGGAACCAATTTGGTGCTGGTGG...GAATGTAAGCCACCAAAGCAGAACCCCATCCCTACCCAGATACCCACCTAAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS CCA 90 bp | ACCACCACTGCGGGACACCGAGCTGAAGCTCGTACGAGAGACAGATaGGGTGATGGCAGAGGCGGCGCTGAAAGAGCGGCTGCCCCCACT | + |
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Preference number: 5 (lower is better) Translates to: TTTAGHRAEARTRDR*GDGRGGAERAAAPT Trigger: AGTGGGGGCAGCCGCTCTTTCAGCGCCGCCTCTGCCATCACCCCATCTGTCTCTCGTACGAGCTTCAGCTCGGTGTCCCGCAGTGGTGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS GCA 90 bp | CAAGGCCACCAGCAAAGCCGCTGCCAAGGCCACCGCCAAAGCCACTaGCAACACCAATGCTGCTGCCTCCTCCGTAGCCAGAAGAGACAC | + |
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Preference number: 5 (lower is better) Translates to: QGHQQSRCQGHRQSH*QHQCCCLLRSQKRH Trigger: GTGTCTCTTCTGGCTACGGAGGAGGCAGCAGCATTGGTGTTGGCAGTGGCTTTGGCGGTGGCCTTGGCAGCGGCTTTGCTGGTGGCCTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CAA 90 bp | ATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGGTGCCACCAGCACCAAATaGGTTCCTGAAGCTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: MGRPEVGIRSLPGTKACGATSTK*VPEAAS Trigger: GGAGGCAGCTTCAGGAACCAATTTGGTGCTGGTGGC...ACCACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CAA 90 bp | CCATGGGGAGGCCAGAGGTTGGGATTCGTTCCCTTCCGGGAACCAAAGCATGTGTTGTTTCTGGCATCTTaGAGAGCCAGCTCCCCGCGT | + |
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Preference number: 5 (lower is better) Translates to: PWGGQRLGFVPFREPKHVLFLAS*RASSPR Trigger: ACGCGGGGAGCTGGCTCTCAAAGATGCCAGAAACAA...CACATGCTTTGGTTCCCGGAAGGGAACGAATCCCAACCTCTGGCCTCCCCATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CAA 90 bp | GCTGACGTGCAACACAAATGTAGAACTGAGCCATGGGGAGGCCAGAGGTTGGGAGAAGCTCATGCCTCCTaGACTGCTGCCTGCACTGAA | + |
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Preference number: 5 (lower is better) Translates to: ADVQHKCRTEPWGGQRLGEAHAS*TAACTE Trigger: TTCAGTGCAGGCAGCAGTCAAGGAGGCATGAGCTTC...TCCCAACCTCTGGCCTCCCCATGGCTCAGTTCTACATTTGTGTTGCACGTCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS-3UTR CAA 90 bp | TCTAGACTACTCTCCAGAAAAAGGAAACGTGGCCTGGGAGACTGCCTAAAAGAAGTAACGACAGAGATGTaGACTGGTCCAACTCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: SRLLSRKRKRGLGDCLKEVTTEM*TGPTPS Trigger: GGAAGGAGTTGGACCAGTCAACATCTCTGTCGTTAC...TTCTTTTAGGCAGTCTCCCAGGCCACGTTTCCTTTTTCTGGAGAGTAGTCTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS TCA 72 bp | TGCCATAGCCCCCGGCTCCACAAGCACCCCCAAGGCTaGTCCTGCCACCACCACCACCACCACTGCGGGACA | + |
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Preference number: 6 (lower is better) Translates to: CHSPRLHKHPQG*SCHHHHHHCGT Trigger: TGTCCCGCAGTGGTGGTGGTGGTGGTGGCAGGATCAGCCTTGGGGGTGCTTGTGGAGCCGGGGGCTATGGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS CCA 72 bp | ACCCAAACCAAGACCCCCACCACCCCTGGTGAAGCGTaGGCCAAGGCCACCAGCAAAGCCGCTGCCAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: TQTKTPTTPGEA*AKATSKAAAKA Trigger: GGCCTTGGCAGCGGCTTTGCTGGTGGCCTTGGCCCACGCTTCACCAGGGGTGGTGGGGGTCTTGGTTTGGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS CCA 72 bp | GCGGGACACCGAGCTGAAGCTCGTACGAGAGACAGATaGGGTGATGGCAGAGGCGGCGCTGAAAGAGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: AGHRAEARTRDR*GDGRGGAERAA Trigger: AGCCGCTCTTTCAGCGCCGCCTCTGCCATCACCCCATCTGTCTCTCGTACGAGCTTCAGCTCGGTGTCCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS GCA 72 bp | TGCCAAGGCCACCGCCAAAGCCACTGCCAACACCAATaGTGCTGCCTCCTCCGTAGCCAGAAGAGACACTGT | + |
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Preference number: 6 (lower is better) Translates to: CQGHRQSHCQHQ*CCLLRSQKRHC Trigger: ACAGTGTCTCTTCTGGCTACGGAGGAGGCAGCAGCATTGGTGTTGGCAGTGGCTTTGGCGGTGGCCTTGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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| CDS GCA 72 bp | CAAGGCCACCGCCAAAGCCACTGCCAACACCAATGCTaGTGCCTCCTCCGTAGCCAGAAGAGACACTGTTTG | + |
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Preference number: 6 (lower is better) Translates to: QGHRQSHCQHQC*CLLRSQKRHCL Trigger: CAAACAGTGTCTCTTCTGGCTACGGAGGAGGCAGCAGCATTGGTGTTGGCAGTGGCTTTGGCGGTGGCCTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023709.7 |
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