Pregenerated sensors for KRT42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053654Ensembl transcript IDs: ENSMUST00000017270.8
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAACCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGGCTTGGCAGTAGATaGAGGGAGCTGCAGCCTAAG | + |
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Preference number: 2 (lower is better) Translates to: QPKGPLCKGQHKANTEGNRLGSR*RELQPK Trigger: CTTAGGCTGCAGCTCCCTGCATCTACTGCCAAGCCT...GTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR CCA 90 bp | GGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCTAGCTCACACCTCCCAAGAGGCTaGGAGCCCGGCAGGCACCCC | + |
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Preference number: 4 (lower is better) Translates to: GLSVRGSTKQTQKATASSHLPRG*EPGRHP Trigger: GGGGTGCCTGCCGGGCTCCCAGCCTCTTGGGAGGTG...TGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | CAACCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACGCCGGTCCGGGGCCCTaGTTCTTGTACCACTCACGG | + |
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Preference number: 4 (lower is better) Translates to: QPKGPLCKGQHKANTEGNAGPGP*FLYHSR Trigger: CCGTGAGTGGTACAAGAAGCAGGGCCCCGGACCGGC...GTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | CCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCAGCCCCCACCCAGGCTaGAAGTGTAGCCACCACCAT | + |
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Preference number: 4 (lower is better) Translates to: PKGPLCKGQHKANTEGNSSPHPG*KCSHHH Trigger: ATGGTGGTGGCTACACTTGCAGCCTGGGTGGGGGCT...GCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | GGTCAACCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCTGGTCTCCTTCTCACTaGCCCCTAGGAGGGCATCCG | + |
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Preference number: 4 (lower is better) Translates to: GQPKGPLCKGQHKANTEGWSPSH*PLGGHP Trigger: CGGATGCCCTCCTAGGGGGCAGTGAGAAGGAGACCA...GCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGGTTGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | CCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCGCGGAAGTCATCGGCTaGCAGGCGAGCGTTGTCAAT | + |
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Preference number: 4 (lower is better) Translates to: PKGPLCKGQHKANTEGNSAEVIG*QASVVN Trigger: ATTGACAACGCTCGCCTGGCAGCCGATGACTTCCGC...GCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | GCACAAAGCAAACACAGAAGGCAACAGCTAGCTCATAGGAGTTCAGGCTTGGCAGGCGGCTGGTCACCATaGCTTCTCGGGAGGGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: AQSKHRRQQLAHRSSGLAGGWSP*LLGRAA Trigger: CGCAGCCCTCCCGAGAAGGCATGGTGACCAGCCGCC...TGCCAAGCCTGAACTCCTATGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR CCA 90 bp | GGTCAACCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCCCGACACACCAAAACTaGAGCCAAAGCCCCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: GQPKGPLCKGQHKANTEGPTHQN*SQSPHP Trigger: TGGGTGGGGGCTTTGGCTCCAGTTTTGGTGTGTCGG...GCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGGTTGACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR CCA 90 bp | CCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCTGCAGGGCCTCCGTGTTaGTGGCCACTTCTCGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: PRGLSVRGSTKQTQKATAAGPPC*WPLLGS Trigger: TGAACCGAGAAGTGGCCACCAACACGGAGGCCCTGC...AGCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | GCACAAAGCAAACACAGAAGGCAACAGCTAGCTCATAGGAGTTCAGGCTTGGCACTGCTAATGAGGCCCTaGAGCTGCGCCAGCTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: AQSKHRRQQLAHRSSGLALLMRP*SCASWA Trigger: GGCCCAGCTGGCGCAGCTGCAGGGCCTCATTAGCAG...TGCCAAGCCTGAACTCCTATGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR TCA 90 bp | GGTCAACCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACGGAGCCAGAAGTTaGAAACTGGCGGACACTGGT | + |
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Preference number: 4 (lower is better) Translates to: GQPKGPLCKGQHKANTEGNGARS*KLADTG Trigger: ACCAGTGTCCGCCAGTTTTCAACTTCTGGCTCCGTT...GCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGGTTGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR TCA 90 bp | CCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCGGTCCTCTATGGTCTTaGAGTAGGGGCTGTAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: PKGPLCKGQHKANTEGNSGPLWS*SRGCSH Trigger: GTGACTACAGCCCCTACTTCAAGACCATAGAGGACC...GCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | CCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCTCTGTCTCGTACTTGGTaGGGAAGTCATCGGCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: PRGLSVRGSTKQTQKATALSRTW*GSHRLP Trigger: TGGCAGCCGATGACTTCCGCACCAAGTACGAGACAG...AGCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | GCACAAAGCAAACACAGAAGGCAACAGCTAGCTCATAGGAGTTCAGGCTTGGCATCTGTCCGGCTGCTCTaGAGGGCCTCCGTGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: AQSKHRRQQLAHRSSGLASVRLL*RASVLV Trigger: CACCAACACGGAGGCCCTGCAGAGCAGCCGGACAGA...TGCCAAGCCTGAACTCCTATGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | GGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCTAGCTCATCAATCTCCAGGTTCTaGACAGAGCGGCGGAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GLSVRGSTKQTQKATASSSISRF*TERRSS Trigger: GGAGCTCCGCCGCTCTGTGCAGAACCTGGAGATTGA...TGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| 3UTR CAA 72 bp | CACAGAAGGCAACAGCTAGCTCATAGGAGTTCAGGCTaGGCAGTAGATGCAGGGAGCTGCAGCCTAAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: HRRQQLAHRSSG*AVDAGSCSLRS Trigger: GGACCTTAGGCTGCAGCTCCCTGCATCTACTGCCAAGCCTGAACTCCTATGAGCTAGCTGTTGCCTTCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR TCA 90 bp | CAACCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACCAGGCTGTTCTCCAGTaGTGCTTTCATGCTGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: QPKGPLCKGQHKANTEGNQAVLQ*CFHAEL Trigger: CAGCTCAGCATGAAAGCATCACTGGAGAACAGCCTG...GTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | CAAAGCAAACACAGAAGGCAACAGCTAGCTCATAGGAGTTCAGGCTTGGCAGTACCTTCTCGGGAGGGCTaGGAAGCCAGGGATGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: QSKHRRQQLAHRSSGLAVPSREG*EARDEE Trigger: CTCCTCATCCCTGGCTTCGCAGCCCTCCCGAGAAGG...TACTGCCAAGCCTGAACTCCTATGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR CCA 90 bp | GGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCTAGCTCAGGTGCACCTGCTCTCTaGAGGAGACCACCTTACCAT | + |
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Preference number: 4 (lower is better) Translates to: GLSVRGSTKQTQKATASSGAPAL*RRPPYH Trigger: ATGGTAAGGTGGTCTCCTCCAGAGAGCAGGTGCACC...TGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | CAAAGCAAACACAGAAGGCAACAGCTAGCTCATAGGAGTTCAGGCTTGGCAGTATCCGGGAGAATCCCATaGCGGGAGCACAAAGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: QSKHRRQQLAHRSSGLAVSGRIP*REHKGP Trigger: AGGGCCTTTGTGCTCCCGGCATGGGATTCTCCCGGA...TACTGCCAAGCCTGAACTCCTATGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR GCA 90 bp | GGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCTAGCTCACGCAGCTCACACAGCTaGTGTTCCACACTGCTAATG | + |
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Preference number: 4 (lower is better) Translates to: GLSVRGSTKQTQKATASSRSSHS*CSTLLM Trigger: CATTAGCAGTGTGGAACAGCAGCTGTGTGAGCTGCG...TGAGCTAGCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR CCA 90 bp | GGTCAACCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCCCAGAAGTTGAAAACTaGCGGACACTGGTAGTGGAA | + |
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Preference number: 4 (lower is better) Translates to: GQPKGPLCKGQHKANTEGPEVEN*RTLVVE Trigger: TTCCACTACCAGTGTCCGCCAGTTTTCAACTTCTGG...GCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGGTTGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS TCA 90 bp | GCGGCTGGTCACCATGCCTTCTCGGGAGGGCTGCGAAGCCAGGGATaGGGAGTATTGAGTAGCCAGGTGGGCGTCCTCGCCCTCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: AAGHHAFSGGLRSQG*GVLSSQVGVLALQQ Trigger: CTGCTGGAGGGCGAGGACGCCCACCTGGCTACTCAATACTCCTCATCCCTGGCTTCGCAGCCCTCCCGAGAAGGCATGGTGACCAGCCGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS TCA 90 bp | CACCACCATAGCCGCCTCCTAAGCCTGCTGAGAAGCGGGAGGAGGTaGCGGACATATTGCCACAGCTTCCACCTCCCAAGAGGCTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: HHHSRLLSLLRSGRR*RTYCHSFHLPRGWE Trigger: CTCCCAGCCTCTTGGGAGGTGGAAGCTGTGGCAATATGTCCGTCACCTCCTCCCGCTTCTCAGCAGGCTTAGGAGGCGGCTATGGTGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS-3UTR CAA 90 bp | CCCAAGGGGCCTCTCTGTAAGGGGCAGCACAAAGCAAACACAGAAGGCAACAGCGAGGTGACGGACATATaGCCACAGCTTCCACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: PKGPLCKGQHKANTEGNSEVTDI*PQLPPP Trigger: GGGAGGTGGAAGCTGTGGCAATATGTCCGTCACCTC...GCTGTTGCCTTCTGTGTTTGCTTTGTGCTGCCCCTTACAGAGAGGCCCCTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS CAA 90 bp | CCGCCTCCTAAGCCTGCTGAGAAGCGGGAGGAGGTGACGGACATATaGCCACAGCTTCCACCTCCCAAGAGGCTGGGAGCCCGGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: PPPKPAEKREEVTDI*PQLPPPKRLGARQA Trigger: TGCCTGCCGGGCTCCCAGCCTCTTGGGAGGTGGAAGCTGTGGCAATATGTCCGTCACCTCCTCCCGCTTCTCAGCAGGCTTAGGAGGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS TCA 72 bp | TCTCGGGAGGGCTGCGAAGCCAGGGATGAGGAGTATTaGGTAGCCAGGTGGGCGTCCTCGCCCTCCAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SREGCEARDEEY*VARWASSPSSR Trigger: TCTGCTGGAGGGCGAGGACGCCCACCTGGCTACTCAATACTCCTCATCCCTGGCTTCGCAGCCCTCCCGAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS CAA 72 bp | AAGCCTGCTGAGAAGCGGGAGGAGGTGACGGACATATaGCCACAGCTTCCACCTCCCAAGAGGCTGGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: KPAEKREEVTDI*PQLPPPKRLGA Trigger: GGCTCCCAGCCTCTTGGGAGGTGGAAGCTGTGGCAATATGTCCGTCACCTCCTCCCGCTTCTCAGCAGGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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| CDS TCA 72 bp | AGCCGCCTCCTAAGCCTGCTGAGAAGCGGGAGGAGGTaGCGGACATATTGCCACAGCTTCCACCTCCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: SRLLSLLRSGRR*RTYCHSFHLPR Trigger: TCTTGGGAGGTGGAAGCTGTGGCAATATGTCCGTCACCTCCTCCCGCTTCTCAGCAGGCTTAGGAGGCGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017270.8 |
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