Pregenerated sensors for KRT40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059169Ensembl transcript IDs: ENSMUST00000074253.4, ENSMUST00000107443.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGGGGCAGACCAGAGGGGCATTGGGCTCGCATTGCTCTCGGATCCTaGACTCCAGCTCTGCGTTGTTCTCTTCCAGGCTTCTCACCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RGRPEGHWARIALGS*TPALRCSLPGFSPS Trigger: AGAGGGTGAGAAGCCTGGAAGAGAACAACGCAGAGCTGGAGTGCAGGATCCGAGAGCAATGCGAGCCCAATGCCCCTCTGGTCTGCCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 90 bp | TGGTGTCGAAGTACCGCTGATAATCGGGGCAGACCAGAGGGGCATTaGGCTCGCATTGCTCTCGGATCCTGCACTCCAGCTCTGCGTTGT | + |
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Preference number: 5 (lower is better) Translates to: WCRSTADNRGRPEGH*ARIALGSCTPALRC Trigger: ACAACGCAGAGCTGGAGTGCAGGATCCGAGAGCAATGCGAGCCCAATGCCCCTCTGGTCTGCCCCGATTATCAGCGGTACTTCGACACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 90 bp | GCTCACACATGCTGTTTGAACACGGCTCACATGTGCTGTTCGGCATaGGTGCTCCGGAGCCTGGATTGCAGGGGAGTCTGCTGTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: AHTCCLNTAHMCCSA*VLRSLDCRGVCCPP Trigger: AGGAGGACAGCAGACTCCCCTGCAATCCAGGCTCCGGAGCACCCATGCCGAACAGCACATGTGAGCCGTGTTCAAACAGCATGTGTGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 90 bp | CAGCCAAGTAGCACGGTGAGAGGCAACAGGCTGGGAGGGAAGCCCTaGAGAGGAAGCTTGGGGTTTGACATCTGGATGTGGAACAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: QPSSTVRGNRLGGKP*RGSLGFDIWMWNRC Trigger: ACACCTGTTCCACATCCAGATGTCAAACCCCAAGCTTCCTCTGCAGGGCTTCCCTCCCAGCCTGTTGCCTCTCACCGTGCTACTTGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 90 bp | CTGCTGCTGGTTCAGCTCTTCTGTCTGAGCAGCGAACCACTCCTCTaGATCCCTGCGGTTGTTGGCCAGCACCCTCTCGTATTGACATCG | + |
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Preference number: 5 (lower is better) Translates to: LLLVQLFCLSSEPLL*IPAVVGQHPLVLTS Trigger: CGATGTCAATACGAGAGGGTGCTGGCCAACAACCGCAGGGATGCAGAGGAGTGGTTCGCTGCTCAGACAGAAGAGCTGAACCAGCAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 90 bp | ATTTCCAGAGTGTTGGCCTTGCGCTTCAACTCCAACATCTCAGTCTaGCAGCCCTCCAACTGCTCCGCGCTGGACTTCTGCTGCTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: ISRVLALRFNSNISV*QPSNCSALDFCCWF Trigger: GAACCAGCAGCAGAAGTCCAGCGCGGAGCAGTTGGAGGGCTGCCAGACTGAGATGTTGGAGTTGAAGCGCAAGGCCAACACTCTGGAAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 90 bp | TCAGGGTTTGCTGCGCCTGGAGCTCAATTTCCAGAGTGTTGGCCTTaGGCTTCAACTCCAACATCTCAGTCTGGCAGCCCTCCAACTGCT | + |
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Preference number: 5 (lower is better) Translates to: SGFAAPGAQFPECWP*ASTPTSQSGSPPTA Trigger: AGCAGTTGGAGGGCTGCCAGACTGAGATGTTGGAGTTGAAGCGCAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 90 bp | TGCAGAGGAAGCTTGGGGTTTGACATCTGGATGTGGAACAGGTGTTaGGGAGGCAAGTTGTGTTGGTGGGGCAGAATGAGGCAGTTGCGC | + |
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Preference number: 5 (lower is better) Translates to: CRGSLGFDIWMWNRC*GGKLCWWGRMRQLR Trigger: GCGCAACTGCCTCATTCTGCCCCACCAACACAACTTGCCTCCCCAACACCTGTTCCACATCCAGATGTCAAACCCCAAGCTTCCTCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 90 bp | TCTGCCACAGTACACTCCAGAGACTCCGTCAGGGTTTGCTGCGCCTaGAGCTCAATTTCCAGAGTGTTGGCCTTGCGCTTCAACTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: SATVHSRDSVRVCCA*SSISRVLALRFNSN Trigger: GTTGGAGTTGAAGCGCAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGACGGAGTCTCTGGAGTGTACTGTGGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 90 bp | AGTTTTCAACTGTGCAAATCACATAGGCTGAACACGGCTCACACATaGTGTTTGAACACGGCTCACATGTGCTGTTCGGCATGGGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: SFQLCKSHRLNTAHT*CLNTAHMCCSAWVL Trigger: GAGCACCCATGCCGAACAGCACATGTGAGCCGTGTTCAAACAGCATGTGTGAGCCGTGTTCAGCCTATGTGATTTGCACAGTTGAAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | ATGTGCTGTTCGGCATGGGTGCTCCGGAGCCTGGATTaGAGGGGAGTCTGCTGTCCTCCTTCTCCAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: MCCSAWVLRSLD*RGVCCPPSPAG Trigger: GCCTGCTGGAGAAGGAGGACAGCAGACTCCCCTGCAATCCAGGCTCCGGAGCACCCATGCCGAACAGCACAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 72 bp | GGAGGCAAGTTGTGTTGGTGGGGCAGAATGAGGCAGTaGCGCAGCCGGAAGCCCCTGCACAGGGCTCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: GGKLCWWGRMRQ*RSRKPLHRAQK Trigger: CTTCTGAGCCCTGTGCAGGGGCTTCCGGCTGCGCAACTGCCTCATTCTGCCCCACCAACACAACTTGCCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 72 bp | CATGTGCTGTTCGGCATGGGTGCTCCGGAGCCTGGATaGCAGGGGAGTCTGCTGTCCTCCTTCTCCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: HVLFGMGAPEPG*QGSLLSSFSSR Trigger: CCTGCTGGAGAAGGAGGACAGCAGACTCCCCTGCAATCCAGGCTCCGGAGCACCCATGCCGAACAGCACATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | GCAGTGTCCAGCTCCACGCTGAGCCGATCGCCAAGCTaGTCACGAAGCAGGTTGACCTCCTCTTCATGGCCT | + |
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Preference number: 6 (lower is better) Translates to: AVSSSTLSRSPS*SRSRLTSSSWP Trigger: AGGCCATGAAGAGGAGGTCAACCTGCTTCGTGAGCAGCTTGGCGATCGGCTCAGCGTGGAGCTGGACACTGC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074253.4 |
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| CDS GCA 72 bp | GGGCTCGCATTGCTCTCGGATCCTGCACTCCAGCTCTaGGTTGTTCTCTTCCAGGCTTCTCACCCTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: GLALLSDPALQL*VVLFQASHPLQ Trigger: CTGGAGAGGGTGAGAAGCCTGGAAGAGAACAACGCAGAGCTGGAGTGCAGGATCCGAGAGCAATGCGAGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | CCAGAGGGGCATTGGGCTCGCATTGCTCTCGGATCCTaGACTCCAGCTCTGCGTTGTTCTCTTCCAGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: PEGHWARIALGS*TPALRCSLPGF Trigger: GAAGCCTGGAAGAGAACAACGCAGAGCTGGAGTGCAGGATCCGAGAGCAATGCGAGCCCAATGCCCCTCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 72 bp | AGTACCGCTGATAATCGGGGCAGACCAGAGGGGCATTaGGCTCGCATTGCTCTCGGATCCTGCACTCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: STADNRGRPEGH*ARIALGSCTPA Trigger: AGCTGGAGTGCAGGATCCGAGAGCAATGCGAGCCCAATGCCCCTCTGGTCTGCCCCGATTATCAGCGGTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 72 bp | GTGTTGGCCTTGCGCTTCAACTCCAACATCTCAGTCTaGCAGCCCTCCAACTGCTCCGCGCTGGACTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: VLALRFNSNISV*QPSNCSALDFC Trigger: GCAGAAGTCCAGCGCGGAGCAGTTGGAGGGCTGCCAGACTGAGATGTTGGAGTTGAAGCGCAAGGCCAACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 72 bp | TGCTGTTTGAACACGGCTCACATGTGCTGTTCGGCATaGGTGCTCCGGAGCCTGGATTGCAGGGGAGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: CCLNTAHMCCSA*VLRSLDCRGVC Trigger: GCAGACTCCCCTGCAATCCAGGCTCCGGAGCACCCATGCCGAACAGCACATGTGAGCCGTGTTCAAACAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 90 bp | GTACCGCTGATAATCGGGGCAGACCAGAGGGGCATTGGGCTCGCATaGCTCTCGGATCCTGCACTCCAGCTCTGCGTTGTTCTCTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: VPLIIGADQRGIGLA*LSDPALQLCVVLFQ Trigger: CTGGAAGAGAACAACGCAGAGCTGGAGTGCAGGATCCGAGAGCAATGCGAGCCCAATGCCCCTCTGGTCTGCCCCGATTATCAGCGGTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 90 bp | GACTCCGTCAGGGTTTGCTGCGCCTGGAGCTCAATTTCCAGAGTGTaGGCCTTGCGCTTCAACTCCAACATCTCAGTCTGGCAGCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: DSVRVCCAWSSISRV*ALRFNSNISVWQPS Trigger: GGAGGGCTGCCAGACTGAGATGTTGGAGTTGAAGCGCAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGACGGAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 72 bp | ATAATCGGGGCAGACCAGAGGGGCATTGGGCTCGCATaGCTCTCGGATCCTGCACTCCAGCTCTGCGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: IIGADQRGIGLA*LSDPALQLCVV Trigger: AACAACGCAGAGCTGGAGTGCAGGATCCGAGAGCAATGCGAGCCCAATGCCCCTCTGGTCTGCCCCGATTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 90 bp | GTCAGGGTTTGCTGCGCCTGGAGCTCAATTTCCAGAGTGTTGGCCTaGCGCTTCAACTCCAACATCTCAGTCTGGCAGCCCTCCAACTGC | + |
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Preference number: 6 (lower is better) Translates to: VRVCCAWSSISRVLA*RFNSNISVWQPSNC Trigger: GCAGTTGGAGGGCTGCCAGACTGAGATGTTGGAGTTGAAGCGCAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | CTTCTGTCTGAGCAGCGAACCACTCCTCTGCATCCCTaGGGTTGTTGGCCAGCACCCTCTCGTATTGACATC | + |
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Preference number: 6 (lower is better) Translates to: LLSEQRTTPLHP*GCWPAPSRIDI Trigger: GATGTCAATACGAGAGGGTGCTGGCCAACAACCGCAGGGATGCAGAGGAGTGGTTCGCTGCTCAGACAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | GCTGCGCCTGGAGCTCAATTTCCAGAGTGTTGGCCTTaGGCTTCAACTCCAACATCTCAGTCTGGCAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: AAPGAQFPECWP*ASTPTSQSGSP Trigger: AGGGCTGCCAGACTGAGATGTTGGAGTTGAAGCGCAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | GCCACAGTACACTCCAGAGACTCCGTCAGGGTTTGCTaGGCCTGGAGCTCAATTTCCAGAGTGTTGGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: ATVHSRDSVRVC*AWSSISRVLAL Trigger: CAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGACGGAGTCTCTGGAGTGTACTGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | TCTGCCACAGTACACTCCAGAGACTCCGTCAGGGTTTaGTGCGCCTGGAGCTCAATTTCCAGAGTGTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: SATVHSRDSVRV*CAWSSISRVLA Trigger: GGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGACGGAGTCTCTGGAGTGTACTGTGGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 72 bp | GTACACTCCAGAGACTCCGTCAGGGTTTGCTGCGCCTaGAGCTCAATTTCCAGAGTGTTGGCCTTGCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: VHSRDSVRVCCA*SSISRVLALRF Trigger: GAAGCGCAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGACGGAGTCTCTGGAGTGTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 72 bp | GACATCTGGATGTGGAACAGGTGTTGGGGAGGCAAGTaGTGTTGGTGGGGCAGAATGAGGCAGTTGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: DIWMWNRCWGGK*CWWGRMRQLRS Trigger: GCTGCGCAACTGCCTCATTCTGCCCCACCAACACAACTTGCCTCCCCAACACCTGTTCCACATCCAGATGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 72 bp | CCCTGCAGAGGAAGCTTGGGGTTTGACATCTGGATGTaGAACAGGTGTTGGGGAGGCAAGTTGTGTTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: PCRGSLGFDIWM*NRCWGGKLCWW Trigger: CCACCAACACAACTTGCCTCCCCAACACCTGTTCCACATCCAGATGTCAAACCCCAAGCTTCCTCTGCAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 72 bp | TTCTGCCACAGTACACTCCAGAGACTCCGTCAGGGTTaGCTGCGCCTGGAGCTCAATTTCCAGAGTGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: FCHSTLQRLRQG*LRLELNFQSVG Trigger: GCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGACGGAGTCTCTGGAGTGTACTGTGGCAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 90 bp | CAACTGTGCAAATCACATAGGCTGAACACGGCTCACACATGCTGTTaGAACACGGCTCACATGTGCTGTTCGGCATGGGTGCTCCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: QLCKSHRLNTAHTCC*NTAHMCCSAWVLRS Trigger: GCTCCGGAGCACCCATGCCGAACAGCACATGTGAGCCGTGTTCAAACAGCATGTGTGAGCCGTGTTCAGCCTATGTGATTTGCACAGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CCA 72 bp | AGCTTGGGGTTTGACATCTGGATGTGGAACAGGTGTTaGGGAGGCAAGTTGTGTTGGTGGGGCAGAATGAGG | + |
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Preference number: 6 (lower is better) Translates to: SLGFDIWMWNRC*GGKLCWWGRMR Trigger: CCTCATTCTGCCCCACCAACACAACTTGCCTCCCCAACACCTGTTCCACATCCAGATGTCAAACCCCAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS GCA 72 bp | CTTCTCATTACTGTTGAACGATCCTTCCTCACACCATaGACAGCTCCCCACCAGGCAAGGACTGTTACAGCC | + |
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Preference number: 6 (lower is better) Translates to: LLITVERSFLTP*TAPHQARTVTA Trigger: GGCTGTAACAGTCCTTGCCTGGTGGGGAGCTGTGCATGGTGTGAGGAAGGATCGTTCAACAGTAATGAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 72 bp | AAATCACATAGGCTGAACACGGCTCACACATGCTGTTaGAACACGGCTCACATGTGCTGTTCGGCATGGGTG | + |
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Preference number: 6 (lower is better) Translates to: KSHRLNTAHTCC*NTAHMCCSAWV Trigger: CACCCATGCCGAACAGCACATGTGAGCCGTGTTCAAACAGCATGTGTGAGCCGTGTTCAGCCTATGTGATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074253.4 ENSMUST00000107443.8 |
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| CDS CAA 72 bp | GCCAAGCTGCTCACGAAGCAGGTTGACCTCCTTTTGTaGGAGTTCTTCAATGGTGTCGAAGTACCGCTGATA | + |
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Preference number: 6 (lower is better) Translates to: AKLLTKQVDLLL*EFFNGVEVPLI Trigger: TATCAGCGGTACTTCGACACCATTGAAGAACTCCAACAAAAGGAGGTCAACCTGCTTCGTGAGCAGCTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107443.8 |
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| CDS CCA 72 bp | CCTTTGTGCACAATATCTTTTGTTGGAGTTCTTCAATaGTGTCGAAGTACCGCTGATAATCGGGGCAGACCA | + |
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Preference number: 6 (lower is better) Translates to: PLCTISFVGVLQ*CRSTADNRGRP Trigger: TGGTCTGCCCCGATTATCAGCGGTACTTCGACACCATTGAAGAACTCCAACAAAAGATATTGTGCACAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074253.4 |
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| CDS CCA 72 bp | CCAAGCTGCTCACGAAGCAGGTTGACCTCCTCTTCATaGCCTTTCTTAAGGCAAATCAGATCATCTTTCATA | + |
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Preference number: 6 (lower is better) Translates to: PSCSRSRLTSSS*PFLRQIRSSFI Trigger: TATGAAAGATGATCTGATTTGCCTTAAGAAAGGCCATGAAGAGGAGGTCAACCTGCTTCGTGAGCAGCTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074253.4 |
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| CDS GCA 72 bp | GCAGTTGTCCACCTGAACGGCAAGTCTAGAATTCTCTaGCTTTGTGCACAATATCTTTTGTTGGAGTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: AVVHLNGKSRIL*LCAQYLLLEFF Trigger: GAAGAACTCCAACAAAAGATATTGTGCACAAAGGCAGAGAATTCTAGACTTGCCGTTCAGGTGGACAACTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074253.4 |
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