Pregenerated sensors for KRT4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059668Ensembl transcript IDs: ENSMUST00000023797.8
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGATGAGTAGAGAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGCTCTGTCCATTGGGGTaGAATCAGACACCCCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: GMSRERSRVARDTKQSLLLCPLG*NQTPLP Trigger: TGGGAGGGGTGTCTGATTTCACCCCAATGGACAGAG...CAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTCTCTACTCATCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| 3UTR-3UTR TCA 90 bp | CAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATTGGGGCAGGAAGACTGGAGGTaGAGTGAAGATCGCACAGGA | + |
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Preference number: 2 (lower is better) Translates to: QCTSAEGVSALHPLCPLGQEDWR*SEDRTG Trigger: TCCTGTGCGATCTTCACTTCACCTCCAGTCTTCCTG...CCCCAATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGAGAGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGGAAGAGTAACAAGATaGGCACCAGGAAGACTGGAG | + |
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Preference number: 2 (lower is better) Translates to: AESDSVHLQKEFLLFIPSGRVTR*APGRLE Trigger: CTCCAGTCTTCCTGGTGCTCATCTTGTTACTCTTCC...AGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACTCTCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| 3UTR-3UTR TCA 90 bp | AGAGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCCCACTTGACCCAAGTTaGGAAGAAGCTACCAGGTTC | + |
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Preference number: 2 (lower is better) Translates to: RVTVYICRRSFCSSSPLSPLDPS*EEATRF Trigger: GAACCTGGTAGCTTCTTCTCAACTTGGGTCAAGTGG...GGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| 3UTR-3UTR GCA 90 bp | TGGAGAATGAGCATCATTGTAGAACATAGATCTCCAGGATCAGGTGGAAGCCGGGTGACAGTGTACATCTaGAGAAGGAGTTTCTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: WRMSIIVEHRSPGSGGSRVTVYI*RRSFCS Trigger: AGAGCAGAAACTCCTTCTGCAGATGTACACTGTCAC...CCGGCTTCCACCTGATCCTGGAGATCTATGTTCTACAATGATGCTCATTCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| 3UTR TCA 72 bp | GGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTaGCCTGGCAGAGCCCGTTGCTGCCAGGTGATGGAG | + |
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Preference number: 3 (lower is better) Translates to: GAGLHGTPSSPC*PGRARCCQVME Trigger: CTCCATCACCTGGCAGCAACGGGCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| 3UTR TCA 72 bp | GTCCTTGTTGACCTGGCAGAGCCCGTTGCTGCCAGGTaGTGGAGAATGAGCATCATTGTAGAACATAGATCT | + |
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Preference number: 3 (lower is better) Translates to: VLVDLAEPVAAR*WRMSIIVEHRS Trigger: AGATCTATGTTCTACAATGATGCTCATTCTCCATCACCTGGCAGCAACGGGCTCTGCCAGGTCAACAAGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| 3UTR GCA 72 bp | CTGAGAGTGACAGTGTACATCTGCAGAAGGAGTTTCTaGTCTTCATCCCCTCTGTCCATTGGGGTGAAATCA | + |
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Preference number: 3 (lower is better) Translates to: LRVTVYICRRSF*SSSPLSIGVKS Trigger: TGATTTCACCCCAATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR GCA 90 bp | GAAGTGAAGATCGCACAGGAGATATCAGGAACGGCTGACCCTGCCGGGCTCAGGAGAAGAGCAGCGCCCTaGACCGCCAGACATGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: EVKIAQEISGTADPAGLRRRAAP*TARHGA Trigger: GGCTCCATGTCTGGCGGTGCAGGGCGCTGCTCTTCT...CCTGAGCCCGGCAGGGTCAGCCGTTCCTGATATCTCCTGTGCGATCTTCACTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | TGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCCCGTTGCTGCCAGGTCCATGTTGGTCAGCTaGCATCTGGAGCTGCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: CTGHQAVLVDLAEPVAARSMLVS*HLELLD Trigger: GTCCAGCAGCTCCAGATGTCAGCTGACCAACATGGA...CCTGGCAGCAACGGGCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | GAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCGGAGCTGCTGGACCTTaGTCTGGTACCAGGATTCAA | + |
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Preference number: 4 (lower is better) Translates to: ERSRVARDTKQSLLTWQSGAAGP*SGTRIQ Trigger: TTGAATCCTGGTACCAGATCAAGGTCCAGCAGCTCC...GCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | GTTGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCCCGTTGCTGCCAGTGGTTGTCTGCTGCTaGAGGAGGTTCCATTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: VARDTKQSLLTWQSPLLPVVVCC*RRFHLV Trigger: GACCAAATGGAACCTCCTCCAGCAGCAGACAACCAC...TGGCAGCAACGGGCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR GCA 90 bp | GAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCGGCGACCTTTGTCATTaGTCAAAGTGTCCAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: ERSRVARDTKQSLLTWQSGDLCH*SKCPGS Trigger: AGAACCTGGACACTTTGAGCAATGACAAAGGTCGCC...GCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR GCA 90 bp | GGGATGAGTAGAGAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGTCCTCCTTGGCCTTCTaGAGTGCAGTCTCCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: GMSRERSRVARDTKQSLLSSLAF*SAVSSS Trigger: AGAACTGGAGACTGCACTGCAGAAGGCCAAGGAGGA...CAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTCTCTACTCATCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | GTTGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCCCGTTGCTGCCATGCTGGACCTTGATCTaGTACCAGGATTCAACCTCA | + |
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Preference number: 4 (lower is better) Translates to: VARDTKQSLLTWQSPLLPCWTLI*YQDSTS Trigger: TGAGGTTGAATCCTGGTACCAGATCAAGGTCCAGCA...TGGCAGCAACGGGCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | GAAGTGAAGATCGCACAGGAGATATCAGGAACGGCTGACCCTGCCGGGCTCAGGCAGCTGTACGCTTGTTaGTCTCCTCTTCATACTTGG | + |
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Preference number: 4 (lower is better) Translates to: EVKIAQEISGTADPAGLRQLYAC*SPLHTW Trigger: CCAAGTATGAAGAGGAGATCAACAAGCGTACAGCTG...CCTGAGCCCGGCAGGGTCAGCCGTTCCTGATATCTCCTGTGCGATCTTCACTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | GGGATGAGTAGAGAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGAGGCTATCTCCATGTTaGTCAGCTGACATCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GMSRERSRVARDTKQSLLRLSPC*SADIWS Trigger: GCTCCAGATGTCAGCTGACCAACATGGAGATAGCCT...CAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTCTCTACTCATCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | AGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATACCACCAGCAATAGCTaGGCCACTGCTAAAGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: SDSVHLQKEFLLFIPSVHTTSNS*ATAKAP Trigger: CGGGGCTTTAGCAGTGGCTCAGCTATTGCTGGTGGT...ATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR GCA 90 bp | AGAGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCTCTGAGACATGTGTCTaGATCTGGGCCAGCTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: RVTVYICRRSFCSSSPLSSETCV*IWASSA Trigger: AGCGGAGCTGGCCCAGATGCAGACACATGTCTCAGA...GGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | GGGATGAGTAGAGAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGCTGAGATCTCATTCTTaGTGGTCTTCAGGCTATCTC | + |
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Preference number: 4 (lower is better) Translates to: GMSRERSRVARDTKQSLLLRSHS*WSSGYL Trigger: GAGATAGCCTGAAGACCACCAAGAATGAGATCTCAG...CAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTCTCTACTCATCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR GCA 90 bp | GCTGAGAGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTGGTGGTTGTCTGCTaGTGGAGGAGGTTCCATTTG | + |
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Preference number: 4 (lower is better) Translates to: AESDSVHLQKEFLLFIPSVVVVC*WRRFHL Trigger: CAAATGGAACCTCCTCCAGCAGCAGACAACCACCAC...AGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACTCTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR GCA 90 bp | CAAGTTGAGAAGAAGCTACCAGGTTCCAATAGAACAGAGGTCACACCATGGCCATGCATCAGCCACAGATaGCTGCAGAGTCTGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: QVEKKLPGSNRTEVTPWPCISHR*LQSLAL Trigger: CAGAGCCAGACTCTGCAGGCATCTGTGGCTGATGCA...TGGCCATGGTGTGACCTCTGTTCTATTGGAACCTGGTAGCTTCTTCTCAACTTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | AAGATGAGCACCAGGAAGACTGGAGGTGAAGTGAAGATCGCACAGGAGATATCAACCCAGCCACGCTCATaGAGATACTCTTGTGACCCC | + |
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Preference number: 4 (lower is better) Translates to: KMSTRKTGGEVKIAQEISTQPRS*RYSCDP Trigger: GGGGTCACAAGAGTATCTCCATGAGCGTGGCTGGGT...TGATATCTCCTGTGCGATCTTCACTTCACCTCCAGTCTTCCTGGTGCTCATCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR GCA 90 bp | AGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATGATGTGGTGGTTGTCTaGTGCTGGAGGAGGTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: SDSVHLQKEFLLFIPSVHDVVVV*CWRRFH Trigger: ATGGAACCTCCTCCAGCAGCAGACAACCACCACATC...ATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | AGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATGCCGTGCGGATTTTCTaGATCTCTGGGTCAATCTCC | + |
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Preference number: 4 (lower is better) Translates to: SDSVHLQKEFLLFIPSVHAVRIF*ISGSIS Trigger: GGAGATTGACCCAGAGATCCAGAAAATCCGCACGGC...ATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | AAGATGAGCACCAGGAAGACTGGAGGTGAAGTGAAGATCGCACAGGAGATATCAGGCTTTTGGGAGATGTaGTGGTTGTCTGCTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: KMSTRKTGGEVKIAQEISGFWEM*WLSAAG Trigger: TCCAGCAGCAGACAACCACCACATCTCCCAAAAGCC...TGATATCTCCTGTGCGATCTTCACTTCACCTCCAGTCTTCCTGGTGCTCATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | TGGAGAATGAGCATCATTGTAGAACATAGATCTCCAGGATCAGGTGGAAGCCGGTGGTCAGCTGACATCTaGAGCTGCTGGACCTTGATC | + |
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Preference number: 4 (lower is better) Translates to: WRMSIIVEHRSPGSGGSRWSADI*SCWTLI Trigger: GATCAAGGTCCAGCAGCTCCAGATGTCAGCTGACCA...CCGGCTTCCACCTGATCCTGGAGATCTATGTTCTACAATGATGCTCATTCTCCA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | GCTGAGAGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTCTTCATACTTGGTCTTaGAGTCCTCCACACTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: AESDSVHLQKEFLLFIPSLHTWS*SPPHCP Trigger: AGGACAGTGTGGAGGACTTCAAGACCAAGTATGAAG...AGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACTCTCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | TGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATTGGGGTGAAATCAGACCACTACAGATGTGTCTaGGACATGTGTCTGCATCTG | + |
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Preference number: 4 (lower is better) Translates to: CRRSFCSSSPLSIGVKSDHYRCV*DMCLHL Trigger: CAGATGCAGACACATGTCTCAGACACATCTGTAGTG...GTCTGATTTCACCCCAATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | AGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATTCTGGCTCTGCTTCTTaGTGTTCTCAATCTCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SDSVHLQKEFLLFIPSVHSGSAS*CSQSLP Trigger: GGGCAGAGATTGAGAACATCAAGAAGCAGAGCCAGA...ATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | AAGATGAGCACCAGGAAGACTGGAGGTGAAGTGAAGATCGCACAGGAGATATCATTTTGGGAGATGTGGTaGTTGTCTGCTGCTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: KMSTRKTGGEVKIAQEISFWEMW*LSAAGG Trigger: TCCTCCAGCAGCAGACAACCACCACATCTCCCAAAA...TGATATCTCCTGTGCGATCTTCACTTCACCTCCAGTCTTCCTGGTGCTCATCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR TCA 90 bp | CAAGTTGAGAAGAAGCTACCAGGTTCCAATAGAACAGAGGTCACACCATGGCCATCTGGATCATCCTGTTaGGTTCTGAGATCTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: QVEKKLPGSNRTEVTPWPSGSSC*VLRSHS Trigger: AGAATGAGATCTCAGAACTCAACAGGATGATCCAGA...TGGCCATGGTGTGACCTCTGTTCTATTGGAACCTGGTAGCTTCTTCTCAACTTG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CCA 90 bp | AGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATAGATCTCATTCTTGGTaGTCTTCAGGCTATCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: SDSVHLQKEFLLFIPSVHRSHSW*SSGYLH Trigger: ATGGAGATAGCCTGAAGACCACCAAGAATGAGATCT...ATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | GTTGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCCCGTTGCTGCCACCCATAGCCGCCGCCTaGGCAGGACCCAGCCACGCT | + |
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Preference number: 5 (lower is better) Translates to: VARDTKQSLLTWQSPLLPPIAAA*AGPSHA Trigger: AGCGTGGCTGGGTCCTGCCAAGGCGGCGGCTATGGG...TGGCAGCAACGGGCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS GCA 90 bp | AACCGGAGCAAAAACCGCTACCCAGGCCAAGGCCACTGCCGCCAATaGTGGCGCTGCCGCCAACTACCGAGATGCTCACAGCACTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: NRSKNRYPGQGHCRQ*WRCRQLPRCSQHSC Trigger: GCAAGAGTGCTGTGAGCATCTCGGTAGTTGGCGGCAGCGCCAGCATTGGCGGCAGTGGCCTTGGCCTGGGTAGCGGTTTTTGCTCCGGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CCA 90 bp | CGGAGCAAAAACCGCTACCCAGGCCAAGGCCACTGCCGCCAATGCTaGCGCTGCCGCCAACTACCGAGATGCTCACAGCACTCTTGCATT | + |
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Preference number: 5 (lower is better) Translates to: RSKNRYPGQGHCRQC*RCRQLPRCSQHSCI Trigger: AATGCAAGAGTGCTGTGAGCATCTCGGTAGTTGGCGGCAGCGCCAGCATTGGCGGCAGTGGCCTTGGCCTGGGTAGCGGTTTTTGCTCCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | GAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCTGGGAGATGTGGTGGTaGTCTGCTGCTGGAGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: ERSRVARDTKQSLLTWQSWEMWW*SAAGGG Trigger: ACCTCCTCCAGCAGCAGACAACCACCACATCTCCCA...GCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | GAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGACCTGGCAGAGCGACTGTAGGCGACCTTaGTCATTGCTCAAAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: ERSRVARDTKQSLLTWQSDCRRP*SLLKVS Trigger: GGACACTTTGAGCAATGACAAAGGTCGCCTACAGTC...GCTCTGCCAGGTCAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | GGGATGAGTAGAGAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCTTGTTGAAAGGATCCAGGCTTTaGGGAGATGTGGTGGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: GMSRERSRVARDTKQSLLKGSRL*GDVVVV Trigger: GACAACCACCACATCTCCCAAAAGCCTGGATCCTTT...CAACAAGGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTCTCTACTCATCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | GAAGTGAAGATCGCACAGGAGATATCAGGAACGGCTGACCCTGCCGGGCTCAGGAGGACTCTCGTGAAGTaGATCTCATCCTTAAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: EVKIAQEISGTADPAGLRRTLVK*ISSLRL Trigger: AAGCCTTAAGGATGAGATCAACTTCACGAGAGTCCT...CCTGAGCCCGGCAGGGTCAGCCGTTCCTGATATCTCCTGTGCGATCTTCACTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | TTATTGGGGATGAGTAGAGAGAGGAGCAGGGTTGCACGGGACACCAAGCAGTCCGTCTGGCTCTGCTTCTaGATGTTCTCAATCTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: LLGMSRERSRVARDTKQSVWLCF*MFSISA Trigger: GGCAGAGATTGAGAACATCAAGAAGCAGAGCCAGAC...GGACTGCTTGGTGTCCCGTGCAACCCTGCTCCTCTCTCTACTCATCCCCAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | CAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATTGGGGGCAGCTGTACGCTTGTaGATCTCCTCTTCATACTTG | + |
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Preference number: 5 (lower is better) Translates to: QCTSAEGVSALHPLCPLGAAVRL*ISSSYL Trigger: CAAGTATGAAGAGGAGATCAACAAGCGTACAGCTGC...CCCCAATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | CAAGTTGAGAAGAAGCTACCAGGTTCCAATAGAACAGAGGTCACACCATGGCCAGATTCAACCTCAGCCTaGCTCTTCCTAGCAATGTCC | + |
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Preference number: 5 (lower is better) Translates to: QVEKKLPGSNRTEVTPWPDSTSA*LFLAMS Trigger: GGACATTGCTAGGAAGAGCAAGGCTGAGGTTGAATC...TGGCCATGGTGTGACCTCTGTTCTATTGGAACCTGGTAGCTTCTTCTCAACTTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | AAGATGAGCACCAGGAAGACTGGAGGTGAAGTGAAGATCGCACAGGAGATATCAGCATCCACATCTTTCTaGAGGACCACGAAGTCATTC | + |
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Preference number: 5 (lower is better) Translates to: KMSTRKTGGEVKIAQEISASTSF*RTTKSF Trigger: GAATGACTTCGTGGTCCTCAAGAAAGATGTGGATGC...TGATATCTCCTGTGCGATCTTCACTTCACCTCCAGTCTTCCTGGTGCTCATCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS-3UTR CAA 90 bp | AGTGACAGTGTACATCTGCAGAAGGAGTTTCTGCTCTTCATCCCCTCTGTCCATTTAAGGCTTTCCATCTaGGCCTCTAACTCCACCTTG | + |
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Preference number: 5 (lower is better) Translates to: SDSVHLQKEFLLFIPSVHLRLSI*ASNSTL Trigger: CAAGGTGGAGTTAGAGGCCAAGATGGAAAGCCTTAA...ATGGACAGAGGGGATGAAGAGCAGAAACTCCTTCTGCAGATGTACACTGTCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CCA 72 bp | AACCGCTACCCAGGCCAAGGCCACTGCCGCCAATGCTaGCGCTGCCGCCAACTACCGAGATGCTCACAGCAC | + |
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Preference number: 6 (lower is better) Translates to: NRYPGQGHCRQC*RCRQLPRCSQH Trigger: GTGCTGTGAGCATCTCGGTAGTTGGCGGCAGCGCCAGCATTGGCGGCAGTGGCCTTGGCCTGGGTAGCGGTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CAA 72 bp | AACGCCGAAGCCTCCGGCACCCCCATAGCCGCCGCCTaGGCAGGACCCAGCCACGCTCATGGAGATACTCTT | + |
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Preference number: 6 (lower is better) Translates to: NAEASGTPIAAA*AGPSHAHGDTL Trigger: AAGAGTATCTCCATGAGCGTGGCTGGGTCCTGCCAAGGCGGCGGCTATGGGGGTGCCGGAGGCTTCGGCGTT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CAA 90 bp | CGCCCTGCACCGCCAGACATGGAGCCTGAGCTAAAGGCCACTCGCTaGACACCACCAGCAATAGCTGAGCCACTGCTAAAGCCCCGGGAG | + |
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Preference number: 6 (lower is better) Translates to: RPAPPDMEPELKATR*TPPAIAEPLLKPRE Trigger: CTCCCGGGGCTTTAGCAGTGGCTCAGCTATTGCTGGTGGTGTCAAGCGAGTGGCCTTTAGCTCAGGCTCCATGTCTGGCGGTGCAGGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS TCA 72 bp | CAGGACAGACTGGGAAGCCAGGACCTCCTCGACCGTTaGAGGAGCCTCCAAAGCCACCGCCAAAACCACCGG | + |
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Preference number: 6 (lower is better) Translates to: QDRLGSQDLLDR*RSLQSHRQNHR Trigger: CCGGTGGTTTTGGCGGTGGCTTTGGAGGCTCCTTCAACGGTCGAGGAGGTCCTGGCTTCCCAGTCTGTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS GCA 72 bp | AAAAACCGCTACCCAGGCCAAGGCCACTGCCGCCAATaGTGGCGCTGCCGCCAACTACCGAGATGCTCACAG | + |
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Preference number: 6 (lower is better) Translates to: KNRYPGQGHCRQ*WRCRQLPRCSQ Trigger: CTGTGAGCATCTCGGTAGTTGGCGGCAGCGCCAGCATTGGCGGCAGTGGCCTTGGCCTGGGTAGCGGTTTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CAA 72 bp | GCAGGACAGACTGGGAAGCCAGGACCTCCTCGACCGTaGAAGGAGCCTCCAAAGCCACCGCCAAAACCACCG | + |
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Preference number: 6 (lower is better) Translates to: AGQTGKPGPPRP*KEPPKPPPKPP Trigger: CGGTGGTTTTGGCGGTGGCTTTGGAGGCTCCTTCAACGGTCGAGGAGGTCCTGGCTTCCCAGTCTGTCCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS TCA 72 bp | AGAAGAGCAGCGCCCTGCACCGCCAGACATGGAGCCTaGGCTAAAGGCCACTCGCTTGACACCACCAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: RRAAPCTARHGA*AKGHSLDTTSN Trigger: ATTGCTGGTGGTGTCAAGCGAGTGGCCTTTAGCTCAGGCTCCATGTCTGGCGGTGCAGGGCGCTGCTCTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CCA 72 bp | GATGGTGACTTCCTGAATACCTCCAGCAGGACAGACTaGGAAGCCAGGACCTCCTCGACCGTTGAAGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: DGDFLNTSSRTD*EARTSSTVEGA Trigger: GGCTCCTTCAACGGTCGAGGAGGTCCTGGCTTCCCAGTCTGTCCTGCTGGAGGTATTCAGGAAGTCACCATC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CAA 72 bp | CCGCCAGACATGGAGCCTGAGCTAAAGGCCACTCGCTaGACACCACCAGCAATAGCTGAGCCACTGCTAAAG | + |
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Preference number: 6 (lower is better) Translates to: PPDMEPELKATR*TPPAIAEPLLK Trigger: CTTTAGCAGTGGCTCAGCTATTGCTGGTGGTGTCAAGCGAGTGGCCTTTAGCTCAGGCTCCATGTCTGGCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CAA 90 bp | TCCACACTGTCCTGCATCATCTTTAGCTCTGACTGTAGGCGACCTTaGTCATTGCTCAAAGTGTCCAGGTTCTTCCTCAAGGCGTTGATG | + |
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Preference number: 6 (lower is better) Translates to: STLSCIIFSSDCRRP*SLLKVSRFFLKALM Trigger: CATCAACGCCTTGAGGAAGAACCTGGACACTTTGAGCAATGACAAAGGTCGCCTACAGTCAGAGCTAAAGATGATGCAGGACAGTGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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| CDS CAA 72 bp | TCCTGCATCATCTTTAGCTCTGACTGTAGGCGACCTTaGTCATTGCTCAAAGTGTCCAGGTTCTTCCTCAAG | + |
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Preference number: 6 (lower is better) Translates to: SCIIFSSDCRRP*SLLKVSRFFLK Trigger: CTTGAGGAAGAACCTGGACACTTTGAGCAATGACAAAGGTCGCCTACAGTCAGAGCTAAAGATGATGCAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023797.8 |
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