Pregenerated sensors for KRT39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064165Ensembl transcript IDs: ENSMUST00000076948.2, ENSMUST00000107445.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGGATGGGGAGCGCCTTaGTGCATGCCTCCTGGATTT | + |
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Preference number: 4 (lower is better) Translates to: GQQDPGISLFHSWGLVIWGWGAP*CMPPGF Trigger: AAATCCAGGAGGCATGCAGCAAGGCGCTCCCCATCC...CCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | AGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGCGGATATCTGCCACCTaGGCCTCCAGGTTGTGGATC | + |
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Preference number: 4 (lower is better) Translates to: RSAGSRHIIVSFLGTSHLRISAT*ASRLWI Trigger: GATCCACAACCTGGAGGCTCAGGTGGCAGATATCCG...CAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | GGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTCTGGATCCACAGCCCTaGCCCTGGGGAGTTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: GSRHIIVSFLGTSHLGLPLDPQP*PWGVCR Trigger: TCTACAAACTCCCCAGGGCCAGGGCTGTGGATCCAG...AGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | AGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGTCTGGCCTGGCAGGATaGCTCCCACTTAGTGGCACA | + |
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Preference number: 4 (lower is better) Translates to: RSAGSRHIIVSFLGTSHLSGLAG*LPLSGT Trigger: TGTGCCACTAAGTGGGAGCCATCCTGCCAGGCCAGA...CAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | AGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGCAGCCTTGCTCAGAGTaGGTGCATCCAGGATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RSAGSRHIIVSFLGTSHLQPCSE*VHPGSA Trigger: AGCAGATCCTGGATGCACTCACTCTGAGCAAGGCTG...CAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | GGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGCCTCATGGTTCGTTTTaGGGCACAGAAGTTCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: GQQDPGISLFHSWGLVIWPHGSF*GTEVPP Trigger: CGGAGGAACTTCTGTGCCTCAAAACGAACCATGAGG...CCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | GATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTAACAAGTATCCGGGATaGGGGTCCAGAGGCACGGCA | + |
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Preference number: 4 (lower is better) Translates to: DPGISLFHSWGLVIWVFLNKYPG*GSRGTA Trigger: TGCCGTGCCTCTGGACCCCCATCCCGGATACTTGTT...AAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR GCA 90 bp | CAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCTGGGGAGCGCCTTGCTaGATGCCTCCTGGATTTTAT | + |
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Preference number: 4 (lower is better) Translates to: QDPGISLFHSWGLVIWVFWGAPC*MPPGFY Trigger: ATAAAATCCAGGAGGCATGCAGCAAGGCGCTCCCCA...GAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR GCA 90 bp | AGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGAGTGCATCCAGGATCTaGTTCAGGCCATTGGCATCG | + |
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Preference number: 4 (lower is better) Translates to: RSAGSRHIIVSFLGTSHLSASRI*FRPLAS Trigger: CGATGCCAATGGCCTGAAGCAGATCCTGGATGCACT...CAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | CAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCTTGTGGATCAGACTCTaGATTTGGGCCAGCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: QDPGISLFHSWGLVIWVFLWIRL*IWASRA Trigger: AGCCCTGCTGGCCCAAATCCAGAGTCTGATCCACAA...GAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR GCA 90 bp | GGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGGTTACAGGGAAGCCTaGCATCTAAGCTCTCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: GQQDPGISLFHSWGLVIWGYREA*HLSSQE Trigger: TTCTTGAGAGCTTAGATGGCAGGCTTCCCTGTAACC...CCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | GGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATCCACAGCCCTGGCCCTaGGGAGTTTGTAGAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: GISLFHSWGLVIWVFLIYPQPWP*GVCRAQ Trigger: CTGTGCTCTACAAACTCCCCAGGGCCAGGGCTGTGG...ATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | CCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTCAGCATTGCTGCTGCTaGGAGCTGCTCACTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: PGISLFHSWGLVIWVFLIQHCCC*ELLTTC Trigger: ACAAGTAGTGAGCAGCTCTCAGCAGCAGCAATGCTG...AATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | AGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGTTCCCAGAGCAGTTTTaGGGTGGGGTTGAAGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: RSAGSRHIIVSFLGTSHLFPEQF*GGVEEE Trigger: TTCTTCTTCAACCCCACCCCAAAACTGCTCTGGGAA...CAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | GGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTGTTGACTGGCCATCATaGCAACAGCTCTTGTTAGAA | + |
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Preference number: 4 (lower is better) Translates to: GSRHIIVSFLGTSHLGLPVDWPS*QQLLLE Trigger: TTCTAACAAGAGCTGTTGTCATGATGGCCAGTCAAC...AGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | AGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGCTGTTACTTCAATGTTaGTTCTGTCCCCTAGTTGGC | + |
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Preference number: 4 (lower is better) Translates to: RSAGSRHIIVSFLGTSHLLLLQC*FCPLVG Trigger: GCCAACTAGGGGACAGAATCAACATTGAAGTAACAG...CAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | ATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATTCGGATAAAGGCAAGGGCTaGATCCACAGCCCTGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: ISLFHSWGLVIWVFLIYSDKGKG*IHSPGP Trigger: AGGGCCAGGGCTGTGGATCCAGCCCTTGCCTTTATC...CGAATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | ATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATTCGAGTCAGGACACAGGATaGGGAGCGCCTTGCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: ISLFHSWGLVIWVFLIYSSQDTG*GAPCCM Trigger: CATGCAGCAAGGCGCTCCCCATCCTGTGTCCTGACT...CGAATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | CAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCACTCAGCTTCATAGTTaGCTCTCAAGTCATCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: QDPGISLFHSWGLVIWVFTQLHS*LSSHLQ Trigger: CTGCAGATGACTTGAGAGCCAACTATGAAGCTGAGT...GAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | GGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATCCACTTAGTGGCACATaGGTTACAGGGAAGCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GISLFHSWGLVIWVFLIYPLSGT*VTGKPA Trigger: GGCAGGCTTCCCTGTAACCCATGTGCCACTAAGTGG...ATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | GGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTCCTCCATCTGTGTATTaGACCATTCTTCTACGTCTT | + |
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Preference number: 4 (lower is better) Translates to: GSRHIIVSFLGTSHLGLPPPSVY*TILLRL Trigger: AAGACGTAGAAGAATGGTTCAATACACAGATGGAGG...AGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR GCA 90 bp | AGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTAGAGCGCCTTGCTGCATaGCTCCTGGATTTTATCCTC | + |
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Preference number: 4 (lower is better) Translates to: RHIIVSFLGTSHLGLPYLERLAA*LLDFIL Trigger: GAGGATAAAATCCAGGAGGCATGCAGCAAGGCGCTC...TAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR GCA 90 bp | GGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATCACAAGATCTTCTGCTaGAGCTCCTCGATGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GISLFHSWGLVIWVFLIYHKIFC*SSSMVV Trigger: CACCACCATCGAGGAGCTGCAGCAGAAGATCTTGTG...ATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | ATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATTCGGCTGCAGCTCCTCGATaGTGGTGTAGTAGGACAGGT | + |
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Preference number: 4 (lower is better) Translates to: ISLFHSWGLVIWVFLIYSAAAPR*WCSRTG Trigger: ACCTGTCCTACTACACCACCATCGAGGAGCTGCAGC...CGAATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | ATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATTCGTCCATAGCTCTGGCCTaGCAGGATGGCTCCCACTTA | + |
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Preference number: 4 (lower is better) Translates to: ISLFHSWGLVIWVFLIYSSIALA*QDGSHL Trigger: TAAGTGGGAGCCATCCTGCCAGGCCAGAGCTATGGA...CGAATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR GCA 90 bp | AGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTAGGCTCTCAAGTCATCTaGAGCCAGTTTGGTGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: RHIIVSFLGTSHLGLPYLGSQVI*SQFGVV Trigger: GACAACACCAAACTGGCTGCAGATGACTTGAGAGCC...TAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | AGGTCAGCAGGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGTTAACTTCTTCCTCATaGTTCGTTTTGAGGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: RSAGSRHIIVSFLGTSHLLTSSS*FVLRHR Trigger: TCTGTGCCTCAAAACGAACCATGAGGAAGAAGTTAA...CAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | ATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATTCGTCCGTCTCAGCTCTATaGTGTCCTTCTGGCAGCATT | + |
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Preference number: 4 (lower is better) Translates to: ISLFHSWGLVIWVFLIYSSVSAL*CPSGSI Trigger: AATGCTGCCAGAAGGACATCATAGAGCTGAGACGGA...CGAATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR GCA 90 bp | AGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTAGCTGCTGCTGAGAGCTaGTCACTACTTGTTGATTCA | + |
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Preference number: 4 (lower is better) Translates to: RHIIVSFLGTSHLGLPYLAAAES*SLLVDS Trigger: TGAATCAACAAGTAGTGAGCAGCTCTCAGCAGCAGC...TAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | CCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTATTCTGTCCCCTAGTTaGCACTGTAAGGAATTAACT | + |
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Preference number: 4 (lower is better) Translates to: PGISLFHSWGLVIWVFLIILSPS*HCKELT Trigger: AGTTAATTCCTTACAGTGCCAACTAGGGGACAGAAT...AATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | GGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATAGAACTTCATATTCCTaGCTCTGTCTTTGCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GISLFHSWGLVIWVFLIYRTSYS*LCLCRA Trigger: TGCCCTGCAAAGACAGAGCCAGGAATATGAAGTTCT...ATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR TCA 90 bp | ATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATTCGATGGTCTCCTTCTCATaGGTGTTAATGCCTTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ISLFHSWGLVIWVFLIYSMVSFS*VLMPSV Trigger: CACTGAAGGCATTAACACTCATGAGAAGGAGACCAT...CGAATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CCA 90 bp | GGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATTGGAATTTTCAGCCTTaGTACACAAGATCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GISLFHSWGLVIWVFLIYWNFQP*YTRSSA Trigger: AGCAGAAGATCTTGTGTACCAAGGCTGAAAATTCCA...ATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS CCA 90 bp | TGTATAAACTGGGGTAAAACACTCCATAGCTCTGGCCTGGCAGGATaGCTCCCACTTAGTGGCACATGGGTTACAGGGAAGCCTGCCATC | + |
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Preference number: 5 (lower is better) Translates to: CINWGKTLHSSGLAG*LPLSGTWVTGKPAI Trigger: GATGGCAGGCTTCCCTGTAACCCATGTGCCACTAAGTGGGAGCCATCCTGCCAGGCCAGAGCTATGGAGTGTTTTACCCCAGTTTATACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | CCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTGTCCTTCTGGCAGCATaGCTGCTGCTGAGAGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: PGISLFHSWGLVIWVFLIVLLAA*LLLRAA Trigger: AGCAGCTCTCAGCAGCAGCAATGCTGCCAGAAGGAC...AATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | GATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTTTCCTGGCTCTGTCTTaGCAGGGCACTGCGGATATC | + |
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Preference number: 5 (lower is better) Translates to: DPGISLFHSWGLVIWVFLFLALS*QGTADI Trigger: GATATCCGCAGTGCCCTGCAAAGACAGAGCCAGGAA...AAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | GATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTTCCTCATGGTTCGTTTaGAGGCACAGAAGTTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: DPGISLFHSWGLVIWVFLSSWFV*RHRSSS Trigger: GGAGGAACTTCTGTGCCTCAAAACGAACCATGAGGA...AAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | GGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTGCTGCTCACTACTTGTaGATTCAGTTCCTCCATCTG | + |
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Preference number: 5 (lower is better) Translates to: GSRHIIVSFLGTSHLGLPAAHYL*IQFLHL Trigger: CAGATGGAGGAACTGAATCAACAAGTAGTGAGCAGC...AGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | GATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATGACCTTCCCATCCTaGATCTCCTTGGTGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: DPGISLFHSWGLVIWVFLMTFPS*ISLVMV Trigger: CACCATCACCAAGGAGATCAAGGATGGGAAGGTCAT...AAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | GGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTCTGGAATTTTCAGCCTaGGTACACAAGATCTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: GSRHIIVSFLGTSHLGLPLEFSA*VHKIFC Trigger: GCAGAAGATCTTGTGTACCAAGGCTGAAAATTCCAG...AGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | GGATCCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTGCTGTTACTTCAATGTaGATTCTGTCCCCTAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: GSRHIIVSFLGTSHLGLPAVTSM*ILSPSW Trigger: CCAACTAGGGGACAGAATCAACATTGAAGTAACAGC...AGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | GGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTATCACTCCAGCCGGGACTaGATGTCTAGCAGAACTTCA | + |
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Preference number: 5 (lower is better) Translates to: GISLFHSWGLVIWVFLIYHSSRD*MSSRTS Trigger: TGAAGTTCTGCTAGACATCAAGTCCCGGCTGGAGTG...ATAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS TCA 90 bp | GTCTCCATGATGGACTCGTACCGGCATCTCATTTCTTGTAGGATTTaGTTTAGGTCAACAGAAGGGGCAGCTGTTACTTCAATGTTGATT | + |
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Preference number: 5 (lower is better) Translates to: VSMMDSYRHLISCRI*FRSTEGAAVTSMLI Trigger: AATCAACATTGAAGTAACAGCTGCCCCTTCTGTTGACCTAAATCAAATCCTACAAGAAATGAGATGCCGGTACGAGTCCATCATGGAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | CCAGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTCCTCCATCTGTGTATaGAACCATTCTTCTACGTCT | + |
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Preference number: 5 (lower is better) Translates to: PGISLFHSWGLVIWVFLISSICV*NHSSTS Trigger: AGACGTAGAAGAATGGTTCAATACACAGATGGAGGA...AATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS-3UTR CAA 90 bp | AGGCATATCATTGTTTCATTCCTGGGGACTAGTCATCTGGGTCTTCCTTATTTACCTTTTCCAGATAGTTaGCAAGGCGTTCGTTCAAAA | + |
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Preference number: 5 (lower is better) Translates to: RHIIVSFLGTSHLGLPYLPFPDS*QGVRSK Trigger: TTTTGAACGAACGCCTTGCAAACTATCTGGAAAAGG...TAAATAAGGAAGACCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107445.8 |
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| CDS GCA 72 bp | TTCCTGGCTCTGTCTTTGCAGGGCACTGCGGATATCTaGCACCTGAGCCTCCAGGTTGTGGATCAGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: FLALSLQGTADI*HLSLQVVDQTL Trigger: CAGAGTCTGATCCACAACCTGGAGGCTCAGGTGGCAGATATCCGCAGTGCCCTGCAAAGACAGAGCCAGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS CCA 72 bp | TGGGGTAAAACACTCCATAGCTCTGGCCTGGCAGGATaGCTCCCACTTAGTGGCACATGGGTTACAGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: WGKTLHSSGLAG*LPLSGTWVTGK Trigger: CTTCCCTGTAACCCATGTGCCACTAAGTGGGAGCCATCCTGCCAGGCCAGAGCTATGGAGTGTTTTACCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS GCA 72 bp | GAACTTCATATTCCTGGCTCTGTCTTTGCAGGGCACTaGGGATATCTGCCACCTGAGCCTCCAGGTTGTGGA | + |
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Preference number: 6 (lower is better) Translates to: ELHIPGSVFAGH*GYLPPEPPGCG Trigger: TCCACAACCTGGAGGCTCAGGTGGCAGATATCCGCAGTGCCCTGCAAAGACAGAGCCAGGAATATGAAGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS CCA 72 bp | TGGTGGTGTAGTAGGACAGGTAGTCAGGACACAGGATaGGGAGCGCCTTGCTGCATGCCTCCTGGATTTTAT | + |
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Preference number: 6 (lower is better) Translates to: WWCSRTGSQDTG*GAPCCMPPGFY Trigger: ATAAAATCCAGGAGGCATGCAGCAAGGCGCTCCCCATCCTGTGTCCTGACTACCTGTCCTACTACACCACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS CAA 90 bp | GATGTCCTTCTGGCAGCATTGCTGCTGCTGAGAGCTGCTCACTACTaGTTGATTCAGTTCCTCCATCTGTGTATTGAACCATTCTTCTAC | + |
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Preference number: 6 (lower is better) Translates to: DVLLAALLLLRAAHY*LIQFLHLCIEPFFY Trigger: GTAGAAGAATGGTTCAATACACAGATGGAGGAACTGAATCAACAAGTAGTGAGCAGCTCTCAGCAGCAGCAATGCTGCCAGAAGGACATC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS TCA 72 bp | GGAGTTTGTAGAGCACAGCCAGTTGACTGGCCATCATaGCAACAGCTCTTGTTAGAAGAAGAGTTCGTCCTA | + |
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Preference number: 6 (lower is better) Translates to: GVCRAQPVDWPS*QQLLLEEEFVL Trigger: TAGGACGAACTCTTCTTCTAACAAGAGCTGTTGTCATGATGGCCAGTCAACTGGCTGTGCTCTACAAACTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS TCA 72 bp | ATGGACTCGTACCGGCATCTCATTTCTTGTAGGATTTaGTTTAGGTCAACAGAAGGGGCAGCTGTTACTTCA | + |
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Preference number: 6 (lower is better) Translates to: MDSYRHLISCRI*FRSTEGAAVTS Trigger: TGAAGTAACAGCTGCCCCTTCTGTTGACCTAAATCAAATCCTACAAGAAATGAGATGCCGGTACGAGTCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS CCA 72 bp | GCAGCTGTTACTTCAATGTTGATTCTGTCCCCTAGTTaGCACTGTAAGGAATTAACTTCTTCCTCATGGTTC | + |
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Preference number: 6 (lower is better) Translates to: AAVTSMLILSPS*HCKELTSSSWF Trigger: GAACCATGAGGAAGAAGTTAATTCCTTACAGTGCCAACTAGGGGACAGAATCAACATTGAAGTAACAGCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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| CDS CAA 72 bp | TTTAGGTCAACAGAAGGGGCAGCTGTTACTTCAATGTaGATTCTGTCCCCTAGTTGGCACTGTAAGGAATTA | + |
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Preference number: 6 (lower is better) Translates to: FRSTEGAAVTSM*ILSPSWHCKEL Trigger: TAATTCCTTACAGTGCCAACTAGGGGACAGAATCAACATTGAAGTAACAGCTGCCCCTTCTGTTGACCTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076948.2 ENSMUST00000107445.8 |
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