Pregenerated sensors for KRT36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020916Ensembl transcript IDs: ENSMUST00000107416.3
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGGCAAGATCATTTAGCTaGCAAGAACCACAAGGTGTC | + |
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Preference number: 2 (lower is better) Translates to: PREHFIGNISRGTWFCMAARSFS*QEPQGV Trigger: GACACCTTGTGGTTCTTGGCAGCTAAATGATCTTGC...CGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | AAAAACCTGCTAAGCAAGGAGGGCCCTAGAGAAGTGCAAGATCATTTAGCTGCCATCTGGGTGCTGACTTaGGGAGCTGGGGTGCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: KNLLSKEGPREVQDHLAAIWVLT*GAGVQG Trigger: GCCCTGCACCCCAGCTCCTCAAGTCAGCACCCAGAT...GGCAGCTAAATGATCTTGCACTTCTCTAGGGCCCTCCTTGCTTAGCAGGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | CCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGGGACAGGTAGGAGCCTaGCAAGCAGCTCCCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: PREHFIGNISRGTWFCMAGQVGA*QAAPRA Trigger: GGCCCTGGGAGCTGCTTGCCAGGCTCCTACCTGTCC...CGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | AAAAACCTGCTAAGCAAGGAGGGCCCTAGAGAAGTGCAAGATCATTTAGCTGCCCAGAGAAGCCTGTCCTaGAGGAGGACACGGACCCCA | + |
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Preference number: 4 (lower is better) Translates to: KNLLSKEGPREVQDHLAAQRSLS*RRTRTP Trigger: TGGGGTCCGTGTCCTCCTTCAGGACAGGCTTCTCTG...GGCAGCTAAATGATCTTGCACTTCTCTAGGGCCCTCCTTGCTTAGCAGGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | CCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGCCGAGAGAAGCTCCCTaGAGTGCCACAGAGGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: PREHFIGNISRGTWFCMAPREAP*SATEAL Trigger: AAGGGCCTCTGTGGCACTTCAGGGAGCTTCTCTCGG...CGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR GCA 90 bp | AAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGTAGCCCGGGGCACCACGTaGTCCCTGGAGGAGATGACT | + |
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Preference number: 4 (lower is better) Translates to: KRTLYWEYFQGNLVLHGVARGTT*SLEEMT Trigger: AGTCATCTCCTCCAGGGAGCACGTGGTGCCCCGGGC...TACGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | AAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGTAGCTGACTTGAGGAGCTaGGGTGCAGGGCCCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KRTLYWEYFQGNLVLHGVADLRS*GAGPSW Trigger: CCAGCTGGGCCCTGCACCCCAGCTCCTCAAGTCAGC...TACGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | GCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCGCAGGCGACGGTAGGTaGCAATCTCTGACTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: AMPREHFIGNISRGTWFCAGDGR*QSLTPA Trigger: GGCTGGAGTCAGAGATTGCCACCTACCGTCGCCTGC...GCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | CCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGTCCGTGGAACAAGGGTaGGCAGGAAGCTTGCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: PREHFIGNISRGTWFCMASVEQG*AGSLQS Trigger: GGACTGCAAGCTTCCTGCCCACCCTTGTTCCACGGA...CGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | AAAAACCTGCTAAGCAAGGAGGGCCCTAGAGAAGTGCAAGATCATTTAGCTGCCCATCCAGTATCTTGTTaGGATCCACTGGGGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: KNLLSKEGPREVQDHLAAHPVSC*DPLGEQ Trigger: CTGCTCCCCCAGTGGATCTCAACAAGATACTGGATG...GGCAGCTAAATGATCTTGCACTTCTCTAGGGCCCTCCTTGCTTAGCAGGTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | ATTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTCCGGATCTGGGTGCTaGCTTGAGGAGCTGGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: ICYAKRTLYWEYFQGNLVSGSGC*LEELGC Trigger: GCACCCCAGCTCCTCAAGTCAGCACCCAGATCCGGA...AACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR GCA 90 bp | AGATTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGCCAAACTGGGGGCCCTaGAGGAGCCCATGGAATGGA | + |
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Preference number: 4 (lower is better) Translates to: RFAMPREHFIGNISRGTWPNWGP*RSPWNG Trigger: TCCATTCCATGGGCTCCTGCAGGGCCCCCAGTTTGG...CCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | ATTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTCAGTGCCAACCAAACTaGGGGCCCTGCAGGAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: ICYAKRTLYWEYFQGNLVQCQPN*GPCRSP Trigger: TGGGCTCCTGCAGGGCCCCCAGTTTGGTTGGCACTG...AACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | CCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGCAGATGTATGGGATCTaGCACTCGTACCACTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: PREHFIGNISRGTWFCMAQMYGI*HSYHSR Trigger: CCGAGAGTGGTACGAGTGTCAGATCCCATACATCTG...CGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | CCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGGTCCGGGCAGATGTATaGGATCTGACACTCGTACCA | + |
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Preference number: 4 (lower is better) Translates to: PREHFIGNISRGTWFCMAVRADV*DLTLVP Trigger: TGGTACGAGTGTCAGATCCCATACATCTGCCCGGAC...CGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | AGATTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGAGTCGGTCCCCAAGCTaGGAACGGAGGGCATTGACT | + |
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Preference number: 4 (lower is better) Translates to: RFAMPREHFIGNISRGTWSRSPS*ERRALT Trigger: AGTCAATGCCCTCCGTTCCCAGCTTGGGGACCGACT...CCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | GCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCCAGGCTTGCATTCCGTaGAACAAGGGTGGGCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: AMPREHFIGNISRGTWFCQACIP*NKGGQE Trigger: TTCCTGCCCACCCTTGTTCCACGGAATGCAAGCCTG...GCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR GCA 90 bp | ATTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTAGCTGTGTGTTCTCCTaGTCCAGCTGCCGCACCTTC | + |
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Preference number: 4 (lower is better) Translates to: ICYAKRTLYWEYFQGNLVSCVFS*SSCRTF Trigger: GAAGGTGCGGCAGCTGGAGCAGGAGAACACACAGCT...AACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | GCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCCCCTGCAGGAGCCCATaGAATGGATGGAAGATATCC | + |
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Preference number: 4 (lower is better) Translates to: AMPREHFIGNISRGTWFCPCRSP*NGWKIS Trigger: GGATATCTTCCATCCATTCCATGGGCTCCTGCAGGG...GCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | TTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTCCTCGGTCTGAGTGTTaGACCAAGCCTCCACATCTC | + |
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Preference number: 4 (lower is better) Translates to: FAMPREHFIGNISRGTWFPRSEC*TKPPHL Trigger: GAGATGTGGAGGCTTGGTTCAACACTCAGACCGAGG...AAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR TCA 90 bp | TTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTTCAGCTCCTCGGTCTaGGTGTTGAACCAAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: FAMPREHFIGNISRGTWFFSSSV*VLNQAS Trigger: GGAGGCTTGGTTCAACACTCAGACCGAGGAGCTGAA...AAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | CCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCATGGCGAGCCCATGGAATGGATaGAAGATATCCGAGAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: PREHFIGNISRGTWFCMASPWNG*KISERS Trigger: GCTTCTCTCGGATATCTTCCATCCATTCCATGGGCT...CGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR GCA 90 bp | ATTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTGTCAGCAGGATCTTCTaGTGCAACTCCTCAGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: ICYAKRTLYWEYFQGNLVVSRIF*CNSSAV Trigger: GACTGCTGAGGAGTTGCAGCAGAAGATCCTGCTGAC...AACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | AGATTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGACCAGCGTCTCATACTaGCATCGCATGTCATCCAGT | + |
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Preference number: 4 (lower is better) Translates to: RFAMPREHFIGNISRGTWTSVSY*HRMSSS Trigger: ACTGGATGACATGCGATGCCAGTATGAGACGCTGGT...CCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| 3UTR CAA 72 bp | ACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTaGCATGGCGTAAAAAGCACAGTTAAGACCAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: TLYWEYFQGNLV*HGVKSTVKTRN Trigger: GTTTCTGGTCTTAACTGTGCTTTTTACGCCATGCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CCA 90 bp | TTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTTTGTAATATCAGCCTaGCATTCTCAGACTTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: FAMPREHFIGNISRGTWFFVISA*HSQTWS Trigger: TGACCAAGTCTGAGAATGCCAGGCTGATATTACAAA...AAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAA 40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS CCA 90 bp | TGGAAGATATCCGAGAGAAGCTCCCTGAAGTGCCACAGAGGCCCTTaGCAGACCCAGCAGAGAAGGTCGGGGTGCAGATCTGGGTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: WKISERSSLKCHRGP*QTQQRRSGCRSGWP Trigger: TGGCCACCCAGATCTGCACCCCGACCTTCTCTGCTGGGTCTGCCAAGGGCCTCTGTGGCACTTCAGGGAGCTTCTCTCGGATATCTTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CAA 90 bp | GCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTTGCTCATCCAGTATCTTGTaGAGATCCACTGGGGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: AMPREHFIGNISRGTWFCSSSIL*RSTGGA Trigger: TGCTCCCCCAGTGGATCTCAACAAGATACTGGATGA...GCAAAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS-3UTR CAA 90 bp | TTTGCTATGCCAAGAGAACACTTTATTGGGAATATTTCCAGGGGAACCTGGTTTATGTCATCCAGTATCTaGTTGAGATCCACTGGGGGA | + |
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Preference number: 5 (lower is better) Translates to: FAMPREHFIGNISRGTWFMSSSI*LRSTGG Trigger: TCCCCCAGTGGATCTCAACAAGATACTGGATGACAT...AAACCAGGTTCCCCTGGAAATATTCCCAATAAAGTGTTCTCTTGGCATAGCAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS CCA 72 bp | TCCGAGAGAAGCTCCCTGAAGTGCCACAGAGGCCCTTaGCAGACCCAGCAGAGAAGGTCGGGGTGCAGATCT | + |
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Preference number: 6 (lower is better) Translates to: SERSSLKCHRGP*QTQQRRSGCRS Trigger: AGATCTGCACCCCGACCTTCTCTGCTGGGTCTGCCAAGGGCCTCTGTGGCACTTCAGGGAGCTTCTCTCGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS GCA 72 bp | ACACGGACCCCACAGTGCCAACCAAACTGGGGGCCCTaGAGGAGCCCATGGAATGGATGGAAGATATCCGAG | + |
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Preference number: 6 (lower is better) Translates to: TRTPQCQPNWGP*RSPWNGWKISE Trigger: CTCGGATATCTTCCATCCATTCCATGGGCTCCTGCAGGGCCCCCAGTTTGGTTGGCACTGTGGGGTCCGTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS CCA 72 bp | CCAAACTGGGGGCCCTGCAGGAGCCCATGGAATGGATaGAAGATATCCGAGAGAAGCTCCCTGAAGTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: PNWGPCRSPWNG*KISERSSLKCH Trigger: GTGGCACTTCAGGGAGCTTCTCTCGGATATCTTCCATCCATTCCATGGGCTCCTGCAGGGCCCCCAGTTTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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| CDS CCA 72 bp | GGATATAAGGTACTCTTACAGCAGGCTTGCATTCCGTaGAACAAGGGTGGGCAGGAAGCTTGCAGTCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: GYKVLLQQACIP*NKGGQEACSPP Trigger: GGGAGGACTGCAAGCTTCCTGCCCACCCTTGTTCCACGGAATGCAAGCCTGCTGTAAGAGTACCTTATATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107416.3 |
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