Pregenerated sensors for KRT35 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048013Ensembl transcript IDs: ENSMUST00000103127.4
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AACTTTAAGGCATTTATGTGCAGAGAATCTTCTCAGTaGTTGGGCCTGGGCCCAGAAAGAACAGAGAGATTT | + |
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Preference number: 3 (lower is better) Translates to: NFKAFMCRESSQ*LGLGPERTERF Trigger: AAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCTCTGCACATAAATGCCTTAAAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | AGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGGCGGGGGCTGCAGGTaGTACGAGCTGCGCCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: RIFSVIGPGPRKNREICAGGGCR*YELRPC Trigger: GCACGGGCGCAGCTCGTACCACCTGCAGCCCCCGCC...AGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | TGCCCCCGCCCTCAGATACGCTGTATTAAATTTCAGAACCTAGGGAAAACACACAGACAGGGCGGGGGCTaGAGGTGGTACGAGCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: CPRPQIRCIKFQNLGKTHRQGGG*RWYELR Trigger: GCGCAGCTCGTACCACCTGCAGCCCCCGCCCTGTCT...GTGTGTTTTCCCTAGGTTCTGAAATTTAATACAGCGTATCTGAGGGCGGGGGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| 3UTR CAA 72 bp | AGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTaGCGCTGTAACAGTCAGATTGACTGGAGGCCGCGG | + |
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Preference number: 4 (lower is better) Translates to: SDWAWAQKEQRD*RCNSQIDWRPR Trigger: CCGCGGCCTCCAGTCAATCTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | AGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTTCAGCCTCCACCAGCTaGCGCAGGGAAACCTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: RIFSVIGPGPRKNREICASASTS*RRETSV Trigger: GACTGAGGTTTCCCTGCGGCAGCTGGTGGAGGCTGA...AGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | TGTGCAGAGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATGCGGCCTTCTGTCTCTaGCAGGGTGGAGTCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: CAENLLSDWAWAQKEQRDAAFCL*QGGVQS Trigger: GCTTTGGACTCCACCCTGGCAGAGACAGAAGGCCGC...ATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCTCTGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | TTATGTGCAGAGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGGCAAAGCCTCCCGTTaGGAGGCAGAGAGCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: LCAENLLSDWAWAQKEQRGKASR*EAESWE Trigger: CTCCCAGCTCTCTGCCTCCCAACGGGAGGCTTTGCC...TCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCTCTGCACATAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | AAGAACAGAGAGATTTGCGCTGTAACAGTCAGATTGACTGGAGGCCGCGGCCTTAGCCGATCGCCAAGCTaGCAGCGCAGTGAGTTCACT | + |
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Preference number: 4 (lower is better) Translates to: KNREICAVTVRLTGGRGLSRSPS*QRSEFT Trigger: AGTGAACTCACTGCGCTGCCAGCTTGGCGATCGGCT...AAGGCCGCGGCCTCCAGTCAATCTGACTGTTACAGCGCAAATCTCTCTGTTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR TCA 90 bp | ACAGAGACCCTGGAGCCCGTTGAAATGATGAGGCGTCAAGGCCTAAAGGACAACTGCGTCTCAACTCAATaGTGTCCGACTGGCAGGACT | + |
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Preference number: 4 (lower is better) Translates to: TETLEPVEMMRRQGLKDNCVSTQ*CPTGRT Trigger: AGTCCTGCCAGTCGGACATCATTGAGTTGAGACGCA...GTTGTCCTTTAGGCCTTGACGCCTCATCATTTCAACGGGCTCCAGGGTCTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | CCCAGAACAGAGACCCTGGAGCCCGTTGAAATGATGAGGCGTCAAGGCCTAAAGGCAGCTTGCAAGAGCTaGTGGAGTACATGTTGGACA | + |
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Preference number: 4 (lower is better) Translates to: PRTETLEPVEMMRRQGLKAACKS*WSTCWT Trigger: TGTCCAACATGTACTCCAGCAGCTCTTGCAAGCTGC...CTTTAGGCCTTGACGCCTCATCATTTCAACGGGCTCCAGGGTCTCTGTTCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | GCAGAGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGTGGATACCCTGTAATTaGCTCTCCCCAGGCCAGCGG | + |
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Preference number: 4 (lower is better) Translates to: AENLLSDWAWAQKEQRDLWIPCN*LSPGQR Trigger: CCGCTGGCCTGGGGAGAGGCAATTACAGGGTATCCA...CAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | AGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGTAACAGTCAGTGCTGGAGTACATGTTaGACACGCGAGTGGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: SDWAWAQKEQRDLRCNSQCWSTC*TREWIP Trigger: GGGGATCCACTCGCGTGTCCAACATGTACTCCAGCA...CTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | TCAAGGCCTAAAGGACAACCTGCCCTAGTTGACAGGGTCAAAGAAACTTTAAGGCCGTGCCGTAGCTGGTaGCAAAGCCTCCCGTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: SRPKGQPALVDRVKETLRPCRSW*QSLPLG Trigger: TCCCAACGGGAGGCTTTGCCACCAGCTACGGCACGG...CCTTAAAGTTTCTTTGACCCTGTCAACTAGGGCAGGTTGTCCTTTAGGCCTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR TCA 90 bp | GATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGTAACAGTCAGATTGCTCTTCAGAGATCCTaGGGAGAAGCTGGCCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: DWAWAQKEQRDLRCNSQIALQRS*GEAGLE Trigger: CTCAAGGCCAGCTTCTCCTCAGGATCTCTGAAGAGC...AATCTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR TCA 90 bp | AGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTAAGGCAGGGGAGGCATaGCTTGGAGGAAGAGTAGTC | + |
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Preference number: 4 (lower is better) Translates to: RIFSVIGPGPRKNREICAKAGEA*LGGRVV Trigger: GACTACTCTTCCTCCAAGTCATGCCTCCCCTGCCTT...AGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | TTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGTAACACCAAAGCATCTCTCATaGTCTGCTGGGCCTGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: FSVIGPGPRKNREICAVTPKHLS*SAGPAA Trigger: AGCTGCAGGCCCAGCAGAGCATGAGAGATGCTTTGG...TGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | GATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGTAACAGTCAGATTGAGCTGGGAGGCAGCTaGATACCCTGTAATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: DWAWAQKEQRDLRCNSQIELGGS*IPCNCL Trigger: GAGGCAATTACAGGGTATCCAGCTGCCTCCCAGCTC...AATCTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | CGCTGTATTAAATTTCAGAACCTAGGGAAAACACACTCAGAAGGAAAGGAGCAGTCAGAACCGGCCCCCTaGGCAGGGCACACAGACAGG | + |
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Preference number: 4 (lower is better) Translates to: RCIKFQNLGKTHSEGKEQSEPAP*AGHTDR Trigger: CCTGTCTGTGTGCCCTGCCCAGGGGGCCGGTTCTGA...CTGCTCCTTTCCTTCTGAGTGTGTTTTCCCTAGGTTCTGAAATTTAATACAGCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | TGCCCCCGCCCTCAGATACGCTGTATTAAATTTCAGAACCTAGGGAAAACACACAAGGGCTGGGCAGCTTaGAAGAGCTGCTGGAGTACA | + |
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Preference number: 4 (lower is better) Translates to: CPRPQIRCIKFQNLGKTHKGWAA*KSCWST Trigger: TGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCCTT...GTGTGTTTTCCCTAGGTTCTGAAATTTAATACAGCGTATCTGAGGGCGGGGGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | TGTGCAGAGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATCAAAGAGTCTTCTTCTaGAGCTCCTCCATGGTCCGG | + |
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Preference number: 4 (lower is better) Translates to: CAENLLSDWAWAQKEQRDQRVFF*SSSMVR Trigger: CCGGACCATGGAGGAGCTCCAGAAGAAGACTCTTTG...ATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCTCTGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CCA 90 bp | GCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGTAACAGTCAGATTGACTGGACCAAGGTCTCATACTaGCACCTCATCTCATCCAGA | + |
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Preference number: 4 (lower is better) Translates to: AWAQKEQRDLRCNSQIDWTKVSY*HLISSR Trigger: TCTGGATGAGATGAGGTGCCAGTATGAGACCTTGGT...CCAGTCAATCTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR TCA 90 bp | TGTATTAAATTTCAGAACCTAGGGAAAACACACTCAGAAGGAAAGGAGCAGGCCCATCCACCTCAACATTaGGCCGATCGCCAAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: CIKFQNLGKTHSEGKEQAHPPQH*ADRQAG Trigger: GCCAGCTTGGCGATCGGCTCAATGTTGAGGTGGATG...GGCCTGCTCCTTTCCTTCTGAGTGTGTTTTCCCTAGGTTCTGAAATTTAATACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR GCA 90 bp | AGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTCGTTCTCTGCCTTGCTaGAAAGAGTCTTCTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: RIFSVIGPGPRKNREICARSLPC*KESSSG Trigger: TCCAGAAGAAGACTCTTTGCAGCAAGGCAGAGAACG...AGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR TCA 90 bp | GACAGGGTCAAAGAAACTTTAAGGCATTTATGTGCAGAGAATCTTCTCAGTGATAAGCTGGCAGCGCAGTaGGTTCACTTCCTCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: DRVKETLRHLCAENLLSDKLAAQ*VHFLLM Trigger: CATGAGGAGGAAGTGAACTCACTGCGCTGCCAGCTT...ATCACTGAGAAGATTCTCTGCACATAAATGCCTTAAAGTTTCTTTGACCCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS GCA 90 bp | CACAGACAGGGCGGGGGCTGCAGGTGGTACGAGCTGCGCCCGTGCTaGAGGAGACCGCAGGAAGGCAGGGGAGGCATGACTTGGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: HRQGGGCRWYELRPC*RRPQEGRGGMTWRK Trigger: CTTCCTCCAAGTCATGCCTCCCCTGCCTTCCTGCGGTCTCCTGCAGCACGGGCGCAGCTCGTACCACCTGCAGCCCCCGCCCTGTCTGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS TCA 90 bp | AGCTGCGCCCGTGCTGCAGGAGACCGCAGGAAGGCAGGGGAGGCATaGCTTGGAGGAAGAGTAGTCAGGGGCACACGGGTTGCAGGGAAG | + |
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Preference number: 5 (lower is better) Translates to: SCARAAGDRRKAGEA*LGGRVVRGTRVAGK Trigger: CTTCCCTGCAACCCGTGTGCCCCTGACTACTCTTCCTCCAAGTCATGCCTCCCCTGCCTTCCTGCGGTCTCCTGCAGCACGGGCGCAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS CCA 90 bp | CGTGCCGTAGCTGGTGGCAAAGCCTCCCGTTGGGAGGCAGAGAGCTaGGAGGCAGCTGGATACCCTGTAATTGCCTCTCCCCAGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: RAVAGGKASRWEAES*EAAGYPVIASPQAS Trigger: GCTGGCCTGGGGAGAGGCAATTACAGGGTATCCAGCTGCCTCCCAGCTCTCTGCCTCCCAACGGGAGGCTTTGCCACCAGCTACGGCACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS CCA 90 bp | CGCCCGTGCTGCAGGAGACCGCAGGAAGGCAGGGGAGGCATGACTTaGAGGAAGAGTAGTCAGGGGCACACGGGTTGCAGGGAAGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: RPCCRRPQEGRGGMT*RKSSQGHTGCREAC Trigger: GCAAGCTTCCCTGCAACCCGTGTGCCCCTGACTACTCTTCCTCCAAGTCATGCCTCCCCTGCCTTCCTGCGGTCTCCTGCAGCACGGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS CCA 90 bp | GGCCAGCGGAACACACGGAGAAACTCCGGGCTCCACGGGAAGGGCTaGGCAGCTTGCAAGAGCTGCTGGAGTACATGTTGGACACGCGAG | + |
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Preference number: 5 (lower is better) Translates to: GQRNTRRNSGLHGKG*AACKSCWSTCWTRE Trigger: CTCGCGTGTCCAACATGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCCTTCCCGTGGAGCCCGGAGTTTCTCCGTGTGTTCCGCTGGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS GCA 90 bp | AACACACGGAGAAACTCCGGGCTCCACGGGAAGGGCTGGGCAGCTTaGAAGAGCTGCTGGAGTACATGTTGGACACGCGAGTGGATCCCC | + |
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Preference number: 5 (lower is better) Translates to: NTRRNSGLHGKGWAA*KSCWSTCWTREWIP Trigger: GGGGATCCACTCGCGTGTCCAACATGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCCTTCCCGTGGAGCCCGGAGTTTCTCCGTGTGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CAA 90 bp | GATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGTAACAGTCAGATTGGGTTGCAGGGAAGCTaGCTGTCCTCGCTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: DWAWAQKEQRDLRCNSQIGLQGS*LSSLSS Trigger: GCTGGAGAGCGAGGACAGCAAGCTTCCCTGCAACCC...AATCTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CAA 90 bp | AGAATCTTCTCAGTGATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTTCAGGGGCACACGGGTaGCAGGGAAGCTTGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: RIFSVIGPGPRKNREICASGAHG*QGSLLS Trigger: GGACAGCAAGCTTCCCTGCAACCCGTGTGCCCCTGA...AGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATCACTGAGAAGATTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CAA 90 bp | GATTGGGCCTGGGCCCAGAAAGAACAGAGAGATTTGCGCTGTAACAGTCAGATTGAAGGGCTGGGCAGCTaGCAAGAGCTGCTGGAGTAC | + |
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Preference number: 5 (lower is better) Translates to: DWAWAQKEQRDLRCNSQIEGLGS*QELLEY Trigger: GTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCCTTC...AATCTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGGCCCAGGCCCAATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CAA 90 bp | CCCAGAAAGAACAGAGAGATTTGCGCTGTAACAGTCAGATTGACTGGAGGCCGCCTGGCGTTCTCTGCCTaGCTGCAAAGAGTCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: PRKNREICAVTVRLTGGRLAFSA*LQRVFF Trigger: GAAGAAGACTCTTTGCAGCAAGGCAGAGAACGCCAG...GCGGCCTCCAGTCAATCTGACTGTTACAGCGCAAATCTCTCTGTTCTTTCTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS-3UTR CAA 90 bp | TCAAGGCCTAAAGGACAACCTGCCCTAGTTGACAGGGTCAAAGAAACTTTAAGGCTGCTGGAGTACATGTaGGACACGCGAGTGGATCCC | + |
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Preference number: 5 (lower is better) Translates to: SRPKGQPALVDRVKETLRLLEYM*DTRVDP Trigger: GGGATCCACTCGCGTGTCCAACATGTACTCCAGCAG...CCTTAAAGTTTCTTTGACCCTGTCAACTAGGGCAGGTTGTCCTTTAGGCCTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS GCA 72 bp | CACACAGACAGGGCGGGGGCTGCAGGTGGTACGAGCTaGGCCCGTGCTGCAGGAGACCGCAGGAAGGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: HTDRAGAAGGTS*ARAAGDRRKAG Trigger: CCCTGCCTTCCTGCGGTCTCCTGCAGCACGGGCGCAGCTCGTACCACCTGCAGCCCCCGCCCTGTCTGTGTG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS CCA 72 bp | GGCTGGGCAGCTTGCAAGAGCTGCTGGAGTACATGTTaGACACGCGAGTGGATCCCCCTCCGGCTTTCCCCG | + |
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Preference number: 6 (lower is better) Translates to: GWAACKSCWSTC*TREWIPLRLSP Trigger: CGGGGAAAGCCGGAGGGGGATCCACTCGCGTGTCCAACATGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS CAA 72 bp | GGGCTGGGCAGCTTGCAAGAGCTGCTGGAGTACATGTaGGACACGCGAGTGGATCCCCCTCCGGCTTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: GLGSLQELLEYM*DTRVDPPPAFP Trigger: GGGGAAAGCCGGAGGGGGATCCACTCGCGTGTCCAACATGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS CCA 72 bp | CTTCTCCAAACCAACCTCCACCCGTGCCGTAGCTGGTaGCAAAGCCTCCCGTTGGGAGGCAGAGAGCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: LLQTNLHPCRSW*QSLPLGGRELG Trigger: TCCCAGCTCTCTGCCTCCCAACGGGAGGCTTTGCCACCAGCTACGGCACGGGTGGAGGTTGGTTTGGAGAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS GCA 72 bp | AGAAACTCCGGGCTCCACGGGAAGGGCTGGGCAGCTTaGAAGAGCTGCTGGAGTACATGTTGGACACGCGAG | + |
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Preference number: 6 (lower is better) Translates to: RNSGLHGKGWAA*KSCWSTCWTRE Trigger: CTCGCGTGTCCAACATGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCCTTCCCGTGGAGCCCGGAGTTTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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| CDS CCA 72 bp | AACACACGGAGAAACTCCGGGCTCCACGGGAAGGGCTaGGCAGCTTGCAAGAGCTGCTGGAGTACATGTTGG | + |
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Preference number: 6 (lower is better) Translates to: NTRRNSGLHGKG*AACKSCWSTCW Trigger: CCAACATGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCCTTCCCGTGGAGCCCGGAGTTTCTCCGTGTGTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103127.4 |
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