Pregenerated sensors for KRT34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043485Ensembl transcript IDs: ENSMUST00000056362.3
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACCGCCCTCTATGCCAATCTCACGGAGTTCCGTTGGCAGACATGTaGCACCTGAGCAGAAAAGACACTCAACCTTCAACTGAAGGAGTT | + |
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Preference number: 1 (lower is better) Translates to: NRPLCQSHGVPLADM*HLSRKDTQPSTEGV Trigger: AACTCCTTCAGTTGAAGGTTGAGTGTCTTTTCTGCTCAGGTGTCACATGTCTGCCAACGGAACTCCGTGAGATTGGCATAGAGGGCGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR TCA 90 bp | GGCAGACATGTGACACCTGAGCAGAAAAGACACTCAACCTTCAACTaGAGGAGTTGGACAGGAAGTTGCTGGTTCAGGAAAGCTCATCCT | + |
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Preference number: 1 (lower is better) Translates to: GRHVTPEQKRHSTFN*RSWTGSCWFRKAHP Trigger: AGGATGAGCTTTCCTGAACCAGCAACTTCCTGTCCAACTCCTTCAGTTGAAGGTTGAGTGTCTTTTCTGCTCAGGTGTCACATGTCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR-3UTR CCA 90 bp | AAGGCAGGAAATGGAGGCATGTACAGGAACCGCCCTCTATGCCAATCTCACGGATGGACAGGAAGTTGCTaGTTCAGGAAAGCTCATCCT | + |
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Preference number: 2 (lower is better) Translates to: KAGNGGMYRNRPLCQSHGWTGSC*FRKAHP Trigger: AGGATGAGCTTTCCTGAACCAGCAACTTCCTGTCCA...TCCGTGAGATTGGCATAGAGGGCGGTTCCTGTACATGCCTCCATTTCCTGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR-3UTR GCA 90 bp | TTTATTGGGAGGTGGATGAAGCTGCCTCCTTGCATTCCAGAGAATCACCAAGAAGACAACGGAAATCCTTaGAAAGGAGGGGCCTGGGTT | + |
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Preference number: 2 (lower is better) Translates to: FIGRWMKLPPCIPENHQEDNGNP*KGGAWV Trigger: AACCCAGGCCCCTCCTTTGCAAGGATTTCCGTTGTC...TTCTTGGTGATTCTCTGGAATGCAAGGAGGCAGCTTCATCCACCTCCCAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR CAA 90 bp | GCAGAAAAGACACTCAACCTTCAACTGAAGGAGTTGGACAGGAAGTaGCTGGTTCAGGAAAGCTCATCCTCATCTAAAAATCACAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: AEKTLNLQLKELDRK*LVQESSSSSKNHSC Trigger: ACAACTGTGATTTTTAGATGAGGATGAGCTTTCCTGAACCAGCAACTTCCTGTCCAACTCCTTCAGTTGAAGGTTGAGTGTCTTTTCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR TCA 72 bp | AATCTCACGGAGTTCCGTTGGCAGACATGTGACACCTaGGCAGAAAAGACACTCAACCTTCAACTGAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: NLTEFRWQTCDT*AEKTLNLQLKE Trigger: CTCCTTCAGTTGAAGGTTGAGTGTCTTTTCTGCTCAGGTGTCACATGTCTGCCAACGGAACTCCGTGAGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR TCA 72 bp | CTATGCCAATCTCACGGAGTTCCGTTGGCAGACATGTaGCACCTGAGCAGAAAAGACACTCAACCTTCAACT | + |
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Preference number: 3 (lower is better) Translates to: LCQSHGVPLADM*HLSRKDTQPST Trigger: AGTTGAAGGTTGAGTGTCTTTTCTGCTCAGGTGTCACATGTCTGCCAACGGAACTCCGTGAGATTGGCATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR GCA 72 bp | ATAAAGTTTATTGGGAGGTGGATGAAGCTGCCTCCTTaGATTCCAGAGAATCACCAAGAAGAAAGGAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: IKFIGRWMKLPP*IPENHQEERKA Trigger: TGCCTTCCTTTCTTCTTGGTGATTCTCTGGAATGCAAGGAGGCAGCTTCATCCACCTCCCAATAAACTTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR GCA 90 bp | GAAGGCAGGAAATGGAGGCATGTACAGGAACCGCCCTCTATGCCAATCTCACGGTGGTGGCGCATGGGTTaGAGGGGAGGTTGCAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: EGRKWRHVQEPPSMPISRWWRMG*RGGCSP Trigger: AGGACTGCAACCTCCCCTGCAACCCATGCGCCACCA...CCGTGAGATTGGCATAGAGGGCGGTTCCTGTACATGCCTCCATTTCCTGCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR TCA 90 bp | AAGGCAGGAAATGGAGGCATGTACAGGAACCGCCCTCTATGCCAATCTCACGGAGGCAGCGCAGGGTGTTaGCTTCCTCCTCGTGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: KAGNGGMYRNRPLCQSHGGSAGC*LPPRGS Trigger: AGAACCACGAGGAGGAAGTCAACACCCTGCGCTGCC...TCCGTGAGATTGGCATAGAGGGCGGTTCCTGTACATGCCTCCATTTCCTGCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR TCA 90 bp | TTAGTGACAACGGAAATCCTTGCAAAGGAGGGGCCTGGGTTTGACCGTTCCTGCCTCAGAGACTCCACCTaGGCCTCCAAGTCAGACTTG | + |
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Preference number: 4 (lower is better) Translates to: LVTTEILAKEGPGFDRSCLRDST*ASKSDL Trigger: CAAGTCTGACTTGGAGGCTCAGGTGGAGTCTCTGAG...GCAGGAACGGTCAAACCCAGGCCCCTCCTTTGCAAGGATTTCCGTTGTCACTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR TCA 90 bp | GAAAGGAAGGCAGGAAATGGAGGCATGTACAGGAACCGCCCTCTATGCCAATCTCCTCTGACTGTGTGGTaGACCATTCCTCCACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: ERKAGNGGMYRNRPLCQSPLTVW*TIPPLP Trigger: GGGAAGTGGAGGAATGGTTCACCACACAGTCAGAGG...AGATTGGCATAGAGGGCGGTTCCTGTACATGCCTCCATTTCCTGCCTTCCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR CCA 90 bp | ATCTCACGGAGTTCCGTTGGCAGACATGTGACACCTGAGCAGAAAAGACACTCAAGGGGGTCCTGCTGCTaGTTCCTCTCCTGGATCCTA | + |
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Preference number: 4 (lower is better) Translates to: ISRSSVGRHVTPEQKRHSRGSCC*FLSWIL Trigger: TAGGATCCAGGAGAGGAACCAGCAGCAGGACCCCCT...TGAGTGTCTTTTCTGCTCAGGTGTCACATGTCTGCCAACGGAACTCCGTGAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR GCA 90 bp | CTGGTTCAGGAAAGCTCATCCTCATCTAAAAATCACAGTTGTCACGATGACGTTTCAGCCTCCACCAGCTaGCTCATGGACAGCTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: LVQESSSSSKNHSCHDDVSASTS*LMDSSV Trigger: GACTGAGCTGTCCATGAGGCAGCTGGTGGAGGCTGA...AACGTCATCGTGACAACTGTGATTTTTAGATGAGGATGAGCTTTCCTGAACCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR TCA 90 bp | CACCTGAGCAGAAAAGACACTCAACCTTCAACTGAAGGAGTTGGACAGGAAGTTCTTGTTCAGCTCCTCTaGCTGTGTGGTGAACCATTC | + |
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Preference number: 4 (lower is better) Translates to: HLSRKDTQPSTEGVGQEVLVQLL*LCGEPF Trigger: GAATGGTTCACCACACAGTCAGAGGAGCTGAACAAG...AACTTCCTGTCCAACTCCTTCAGTTGAAGGTTGAGTGTCTTTTCTGCTCAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR GCA 90 bp | CTGGTTCAGGAAAGCTCATCCTCATCTAAAAATCACAGTTGTCACGATGACGTTGCACACAGAATCTTCTaGTGCAGCTCCTCAATGGTC | + |
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Preference number: 4 (lower is better) Translates to: LVQESSSSSKNHSCHDDVAHRIF*CSSSMV Trigger: GACCATTGAGGAGCTGCAGCAGAAGATTCTGTGTGC...AACGTCATCGTGACAACTGTGATTTTTAGATGAGGATGAGCTTTCCTGAACCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| 3UTR CAA 72 bp | AATAAAGTTTATTGGGAGGTGGATGAAGCTGCCTCCTaGCATTCCAGAGAATCACCAAGAAGAAAGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: NKVYWEVDEAAS*HSRESPRRKEG Trigger: GCCTTCCTTTCTTCTTGGTGATTCTCTGGAATGCAAGGAGGCAGCTTCATCCACCTCCCAATAAACTTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR CAA 90 bp | CACCTGAGCAGAAAAGACACTCAACCTTCAACTGAAGGAGTTGGACAGGAAGTTGGGTTGCAGGGGAGGTaGCAGTCCTCGCTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: HLSRKDTQPSTEGVGQEVGLQGR*QSSLSS Trigger: GCTGGAGAGCGAGGACTGCAACCTCCCCTGCAACCC...AACTTCCTGTCCAACTCCTTCAGTTGAAGGTTGAGTGTCTTTTCTGCTCAGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR CAA 90 bp | TTTATTGGGAGGTGGATGAAGCTGCCTCCTTGCATTCCAGAGAATCACCAAGAAGTGGTGGCGCATGGGTaGCAGGGGAGGTTGCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: FIGRWMKLPPCIPENHQEVVAHG*QGRLQS Trigger: GGACTGCAACCTCCCCTGCAACCCATGCGCCACCAC...TTCTTGGTGATTCTCTGGAATGCAAGGAGGCAGCTTCATCCACCTCCCAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR CAA 90 bp | AAGAAAGGAAGGCAGGAAATGGAGGCATGTACAGGAACCGCCCTCTATGCCAATCAACTGCCACTAGCATaGGTGGTGGCGCATGGGTTG | + |
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Preference number: 5 (lower is better) Translates to: KKGRQEMEACTGTALYANQLPLA*VVAHGL Trigger: CAACCCATGCGCCACCACCAATGCTAGTGGCAGTTG...ATTGGCATAGAGGGCGGTTCCTGTACATGCCTCCATTTCCTGCCTTCCTTTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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| CDS-3UTR CAA 90 bp | GTTCAGGAAAGCTCATCCTCATCTAAAAATCACAGTTGTCACGATGACGTTTCTAGCTCAGTCTGGTACTaGGTCCTGAAGTCATCAGAG | + |
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Preference number: 5 (lower is better) Translates to: VQESSSSSKNHSCHDDVSSSVWY*VLKSSE Trigger: CTCTGATGACTTCAGGACCAAGTACCAGACTGAGCT...AGAAACGTCATCGTGACAACTGTGATTTTTAGATGAGGATGAGCTTTCCTGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056362.3 |
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