Pregenerated sensors for KRT33B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057723Ensembl transcript IDs: ENSMUST00000073890.4
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCAGACCACCAGATACAAGCCGGTGGTCACGGACAAGCCCTGGATaGAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCACAGCAC | + |
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Preference number: 1 (lower is better) Translates to: LRPPDTSRWSRTSPG*RWSSGPGLRPRPQH Trigger: GTGCTGTGGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTGGTGGTCTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR CCA 90 bp | TACAAGCCGGTGGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTaGGCCTGGACTCAGACCCAGACCACAGCACTAGGCCTGTGTTCT | + |
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Preference number: 1 (lower is better) Translates to: YKPVVTDKPWMKMVQ*AWTQTQTTALGLCS Trigger: AGAACACAGGCCTAGTGCTGTGGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR CCA 90 bp | ATCTCTCAGACCACCAGATACAAGCCGGTGGTCACGGACAAGCCCTaGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCACA | + |
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Preference number: 1 (lower is better) Translates to: ISQTTRYKPVVTDKP*MKMVQWAWTQTQTT Trigger: TGTGGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTGGTGGTCTGAGAGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR TCA 90 bp | CCCTACGGTGCTGGATGTGGGTTCAAAGAGGCTGAGCTGATCCACTaGCTCTCTTTCTGTCTTTATGCAATCCTCCTGCTGGCCATGGGG | + |
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Preference number: 1 (lower is better) Translates to: PYGAGCGFKEAELIH*LSFCLYAILLLAMG Trigger: CCCCATGGCCAGCAGGAGGATTGCATAAAGACAGAAAGAGAGTCAGTGGATCAGCTCAGCCTCTTTGAACCCACATCCAGCACCGTAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR-3UTR GCA 90 bp | GGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCACCTCTTTCTGTCTTTATaGAATCCTCCTGCTGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: GQALDEDGPVGLDSDPDHLFLSL*NPPAGH Trigger: ATGGCCAGCAGGAGGATTGCATAAAGACAGAAAGAG...GTGGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR-3UTR TCA 90 bp | CAGATACAAGCCGGTGGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCGCTGAGCTGATCCACTaGCTCTCTTTCTGTCTTTAT | + |
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Preference number: 2 (lower is better) Translates to: QIQAGGHGQALDEDGPVGAELIH*LSFCLY Trigger: ATAAAGACAGAAAGAGAGTCAGTGGATCAGCTCAGC...GCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR-3UTR TCA 90 bp | CTGCAAGAAAGGGCAGAAGAAGCAGTGAGAACCACAAAATACCTCGTGTGGCCCTCAAAGAGGCTGAGCTaGTCCACTGACTCTCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: LQERAEEAVRTTKYLVWPSKRLS*STDSLS Trigger: AGAAAGAGAGTCAGTGGATCAGCTCAGCCTCTTTGA...GGGCCACACGAGGTATTTTGTGGTTCTCACTGCTTCTTCTGCCCTTTCTTGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR-3UTR TCA 90 bp | GGAAAACTGCAAGAAAGGGCAGAAGAAGCAGTGAGAACCACAAAATACCTCGTGTCTTCTTCCAGACCATaGTCCCTACGGTGCTGGATG | + |
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Preference number: 2 (lower is better) Translates to: GKLQERAEEAVRTTKYLVSSSRP*SLRCWM Trigger: CATCCAGCACCGTAGGGATCATGGTCTGGAAGAAGA...CACGAGGTATTTTGTGGTTCTCACTGCTTCTTCTGCCCTTTCTTGCAGTTTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR TCA 72 bp | CCAGATACAAGCCGGTGGTCACGGACAAGCCCTGGATaGAGATGGTCCAGTGGGCCTGGACTCAGACCCAGA | + |
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Preference number: 3 (lower is better) Translates to: PDTSRWSRTSPG*RWSSGPGLRPR Trigger: TCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR CCA 72 bp | ACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTaGACTCAGACCCAGACCACAGCACTAGGCCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: TDKPWMKMVQWA*TQTQTTALGLC Trigger: ACACAGGCCTAGTGCTGTGGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR CCA 72 bp | ACCACCAGATACAAGCCGGTGGTCACGGACAAGCCCTaGATGAAGATGGTCCAGTGGGCCTGGACTCAGACC | + |
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Preference number: 3 (lower is better) Translates to: TTRYKPVVTDKP*MKMVQWAWTQT Trigger: GGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTGGTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| 3UTR TCA 72 bp | CCTACGGTGCTGGATGTGGGTTCAAAGAGGCTGAGCTaGTCCACTGACTCTCTTTCTGTCTTTATGCAATCC | + |
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Preference number: 3 (lower is better) Translates to: PTVLDVGSKRLS*STDSLSVFMQS Trigger: GGATTGCATAAAGACAGAAAGAGAGTCAGTGGATCAGCTCAGCCTCTTTGAACCCACATCCAGCACCGTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR GCA 90 bp | GGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGCGAGCCTCACTCTCTaGCAGGGTATTCTCCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: GHGQALDEDGPVGLDSDPASLTL*QGILQR Trigger: TCTCTGGAGAATACCCTGGCAGAGAGTGAGGCTCGC...TGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR GCA 90 bp | ACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCAGCAGCCAAAGGAATTaGAGGGTCCACATCGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: TDKPWMKMVQWAWTQTQTSSQRN*RVHIGS Trigger: GCTCCCGATGTGGACCCTGCAATTCCTTTGGCTGCT...GGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR GCA 90 bp | GGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCACCTCCAGATCAGACTTaGAGAGGGTCAGTTCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: GHGQALDEDGPVGLDSDPPPDQT*RGSVRP Trigger: TGGACGAACTGACCCTCTGCAAGTCTGATCTGGAGG...TGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR GCA 90 bp | ACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCCCACAGAGAATCTTCTaGTGCAGCTCCTCAATGGTC | + |
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Preference number: 4 (lower is better) Translates to: TDKPWMKMVQWAWTQTQTPQRIF*CSSSMV Trigger: GACCATTGAGGAGCTGCAGCAGAAGATTCTCTGTGG...GGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR GCA 90 bp | ACCAGATACAAGCCGGTGGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGAGTTTCTCATGCTGTaGTGGGCCTGCAGCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: TRYKPVVTDKPWMKMVQWEFLML*WACSSI Trigger: GATCGAGCTGCAGGCCCAGCACAGCATGAGAAACTC...CCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR GCA 90 bp | ACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCCTTACATTCCAGCTCTaGATTCTCTCTCTCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TDKPWMKMVQWAWTQTQTLTFQL*ILSLQL Trigger: CAGCTGGAGAGAGAGAATGCAGAGCTGGAATGTAAG...GGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CCA 90 bp | ACCAGATACAAGCCGGTGGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGAGGGGGTCCTGCTGCTaGTTCCTCTCTTGGATCTTA | + |
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Preference number: 4 (lower is better) Translates to: TRYKPVVTDKPWMKMVQWRGSCC*FLSWIL Trigger: TAAGATCCAAGAGAGGAACCAGCAGCAGGACCCCCT...CCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CCA 90 bp | ACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCTTGACTTCCTCCTCATaGTTTTGCTTGAGACACAGC | + |
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Preference number: 4 (lower is better) Translates to: TDKPWMKMVQWAWTQTQTLTSSS*FCLRHS Trigger: GCTGTGTCTCAAGCAAAACCATGAGGAGGAAGTCAA...GGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR TCA 90 bp | CTGCAAGAAAGGGCAGAAGAAGCAGTGAGAACCACAAAATACCTCGTGTGGCCCGGCAGCGCAGGGTGTTaGCTTCCTCCTCATGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LQERAEEAVRTTKYLVWPGSAGC*LPPHGF Trigger: AAAACCATGAGGAGGAAGTCAACACCCTGCGCTGCC...GGGCCACACGAGGTATTTTGTGGTTCTCACTGCTTCTTCTGCCCTTTCTTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CCA 90 bp | CAGATACAAGCCGGTGGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCTGCTGGTTCCTCTCTTaGATCTTACATTCCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QIQAGGHGQALDEDGPVGCWFLS*ILHSSS Trigger: AGAGCTGGAATGTAAGATCCAAGAGAGGAACCAGCA...GCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR GCA 90 bp | AATTTATTAGGTTTTTGGAAAACTGCAAGAAAGGGCAGAAGAAGCAGTGAGAACTGGTGGCACAGGGGTTaGAGGGCAGCTTGCAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: NLLGFWKTARKGRRSSENWWHRG*RAACSP Trigger: AGGACTGCAAGCTGCCCTGCAACCCCTGTGCCACCA...GTTCTCACTGCTTCTTCTGCCCTTTCTTGCAGTTTTCCAAAAACCTAATAAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CCA 90 bp | AATTTATTAGGTTTTTGGAAAACTGCAAGAAAGGGCAGAAGAAGCAGTGAGAACTGTCACAGGCATTGGTaGTGGCACAGGGGTTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: NLLGFWKTARKGRRSSENCHRHW*WHRGCR Trigger: CCTGCAACCCCTGTGCCACCACCAATGCCTGTGACA...GTTCTCACTGCTTCTTCTGCCCTTTCTTGCAGTTTTCCAAAAACCTAATAAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CAA 90 bp | GGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGACCACGGGTTGCAGGGCAGCTaGCAGTCCTCGCTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: GQALDEDGPVGLDSDPDHGLQGS*QSSLSS Trigger: GCTGGAGAGCGAGGACTGCAAGCTGCCCTGCAACCC...GTGGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CAA 90 bp | GGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGGCCTGGACTCAGACCCAGGCTTGTCACAGGCATaGGTGGTGGCACAGGGGTTG | + |
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Preference number: 5 (lower is better) Translates to: GHGQALDEDGPVGLDSDPGLSQA*VVAQGL Trigger: CAACCCCTGTGCCACCACCAATGCCTGTGACAAGCC...TGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CAA 90 bp | ACCAGATACAAGCCGGTGGTCACGGACAAGCCCTGGATGAAGATGGTCCAGTGGCTGCTGGTTCCTCTCTaGGATCTTACATTCCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: TRYKPVVTDKPWMKMVQWLLVPL*DLTFQL Trigger: GAGCTGGAATGTAAGATCCAAGAGAGGAACCAGCAG...CCACTGGACCATCTTCATCCAGGGCTTGTCCGTGACCACCGGCTTGTATCTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CAA 90 bp | GGAAAACTGCAAGAAAGGGCAGAAGAAGCAGTGAGAACCACAAAATACCTCGTGGTGGTGGCACAGGGGTaGCAGGGCAGCTTGCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: GKLQERAEEAVRTTKYLVVVAQG*QGSLQS Trigger: GGACTGCAAGCTGCCCTGCAACCCCTGTGCCACCAC...CACGAGGTATTTTGTGGTTCTCACTGCTTCTTCTGCCCTTTCTTGCAGTTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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| CDS-3UTR CAA 90 bp | GGAAAACTGCAAGAAAGGGCAGAAGAAGCAGTGAGAACCACAAAATACCTCGTGCAGGGTCCAATGGGCTaGTCACAGGCATTGGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: GKLQERAEEAVRTTKYLVQGPMG*SQALVV Trigger: CACCACCAATGCCTGTGACAAGCCCATTGGACCCTG...CACGAGGTATTTTGTGGTTCTCACTGCTTCTTCTGCCCTTTCTTGCAGTTTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073890.4 |
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