Pregenerated sensors for KRT33A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035592Ensembl transcript IDs: ENSMUST00000018399.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAACCAGATCCTCCACACTCAACGGAGTTATTTACAGTCACATTTAGAGAAGTTCCCCAAGACAGACTTTaGATCTCCTGTGCCCAAGGA | + |
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Preference number: 2 (lower is better) Translates to: QPDPPHSTELFTVTFREVPQDRL*ISCAQG Trigger: TCCTTGGGCACAGGAGATGCAAAGTCTGTCTTGGGG...AACTTCTCTAAATGTGACTGTAAATAACTCCGTTGAGTGTGGAGGATCTGGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| 3UTR-3UTR CCA 90 bp | CAACCAGATCCTCCACACTCAACGGAGTTATTTACAGTCACATTTAGAGAAGTTGACTCTTTGAGGACTTaGGAAGGGGTGGCATTACGA | + |
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Preference number: 2 (lower is better) Translates to: QPDPPHSTELFTVTFREVDSLRT*EGVALR Trigger: TCGTAATGCCACCCCTTCCCAAGTCCTCAAAGAGTC...AACTTCTCTAAATGTGACTGTAAATAACTCCGTTGAGTGTGGAGGATCTGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| 3UTR-3UTR CCA 90 bp | CGTGCCAGAATAAGAATTTATTGGGAAGACAAAGGATGTGTGTTGCATTTAAAAGGACTTGGGAAGGGGTaGCATTACGATGTAACTGGT | + |
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Preference number: 2 (lower is better) Translates to: RARIRIYWEDKGCVLHLKGLGKG*HYDVTG Trigger: ACCAGTTACATCGTAATGCCACCCCTTCCCAAGTCC...TTTTAAATGCAACACACATCCTTTGTCTTCCCAATAAATTCTTATTCTGGCACG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| 3UTR TCA 72 bp | AAGGATCAAATGAGAAAATACACTCTAGGCTTGAACTaGAGCCAAGAACTGGTCCGTCTTTGTCCAGTGCGG | + |
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Preference number: 3 (lower is better) Translates to: KDQMRKYTLGLN*SQELVRLCPVR Trigger: CCGCACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGAGTGTATTTTCTCATTTGATCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| 3UTR GCA 72 bp | AGAAAAGTTAAGTTCACTGATGTTGTTTCACATGCTTaGCAACCAGATCCTCCACACTCAACGGAGTTATTT | + |
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Preference number: 3 (lower is better) Translates to: RKVKFTDVVSHA*QPDPPHSTELF Trigger: AAATAACTCCGTTGAGTGTGGAGGATCTGGTTGGCAAGCATGTGAAACAACATCAGTGAACTTAACTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR GCA 90 bp | TCTAGGCTTGAACTGAAGCCAAGAACTGGTCCGTCTTTGTCCAGTGCGGTGACTACCAGGGGGTCCTGCTaGTGGTTCCTCTCCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: SRLELKPRTGPSLSSAVTTRGSC*WFLSWI Trigger: GATCCAGGAGAGGAACCAGCAGCAGGACCCCCTGGT...AGTCACCGCACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR TCA 90 bp | AGGCTCCCCAAGACAGACTTTGCATCTCCTGTGCCCAAGGATCAAATGAGAAAAGGCAGCGCAGGGTGTTaGCTTCCTGCTCGTGATTCT | + |
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Preference number: 4 (lower is better) Translates to: RLPKTDFASPVPKDQMRKGSAGC*LPARDS Trigger: AGAATCACGAGCAGGAAGTCAACACCCTGCGCTGCC...TTTTCTCATTTGATCCTTGGGCACAGGAGATGCAAAGTCTGTCTTGGGGAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR GCA 90 bp | TCTAGGCTTGAACTGAAGCCAAGAACTGGTCCGTCTTTGTCCAGTGCGGTGACTGAGTTTCTCAGTTCATaGTGGGCCTGCAGCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: SRLELKPRTGPSLSSAVTEFLSS*WACSSI Trigger: GATCGAGCTGCAGGCCCAGCATGAACTGAGAAACTC...AGTCACCGCACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR CCA 90 bp | TCTAGGCTTGAACTGAAGCCAAGAACTGGTCCGTCTTTGTCCAGTGCGGTGACTGGACACAGGGCCCAATaGGCTTATCACAAGCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: SRLELKPRTGPSLSSAVTGHRAQ*AYHKHW Trigger: CCAATGCTTGTGATAAGCCCATTGGGCCCTGTGTCC...AGTCACCGCACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR GCA 90 bp | AGGCTCCCCAAGACAGACTTTGCATCTCCTGTGCCCAAGGATCAAATGAGAAAAAACGCACAAAAGTGTTaGAAGGTCCACATCGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: RLPKTDFASPVPKDQMRKNAQKC*KVHIEV Trigger: GACCTCGATGTGGACCTTGCAACACTTTTGTGCGTT...TTTTCTCATTTGATCCTTGGGCACAGGAGATGCAAAGTCTGTCTTGGGGAGCCT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR GCA 90 bp | AAAATACACTCTAGGCTTGAACTGAAGCCAAGAACTGGTCCGTCTTTGTCCAGTCCTACATTCCAGCTCTaGATTCTCTCTCTCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KIHSRLELKPRTGPSLSSPTFQL*ILSLQL Trigger: CAGCTGGAGAGAGAGAATGCAGAGCTGGAATGTAGG...ACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGAGTGTATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR GCA 90 bp | CGTGCCAGAATAAGAATTTATTGGGAAGACAAAGGATGTGTGTTGCATTTAAAACACACCAGGGGGTCCTaGTGCTGGTTCCTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: RARIRIYWEDKGCVLHLKHTRGS*CWFLSW Trigger: CCAGGAGAGGAACCAGCAGCAGGACCCCCTGGTGTG...TTTTAAATGCAACACACATCCTTTGTCTTCCCAATAAATTCTTATTCTGGCACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR GCA 90 bp | AAAATACACTCTAGGCTTGAACTGAAGCCAAGAACTGGTCCGTCTTTGTCCAGTCCACACAAGATCTTCTaGTGCAGCTCCTCAATGGTC | + |
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Preference number: 4 (lower is better) Translates to: KIHSRLELKPRTGPSLSSPHKIF*CSSSMV Trigger: GACCATTGAGGAGCTGCAGCAGAAGATCTTGTGTGG...ACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGAGTGTATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR TCA 90 bp | CAACCAGATCCTCCACACTCAACGGAGTTATTTACAGTCACATTTAGAGAAGTTTCTCGTACTTGGTCCTaGAGTCATCAGAAGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: QPDPPHSTELFTVTFREVSRTWS*SHQKPA Trigger: AGCTGGCTTCTGATGACTTCAGGACCAAGTACGAGA...AACTTCTCTAAATGTGACTGTAAATAACTCCGTTGAGTGTGGAGGATCTGGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR GCA 90 bp | AAAATACACTCTAGGCTTGAACTGAAGCCAAGAACTGGTCCGTCTTTGTCCAGTTGGCGTTCTCAGATTTaGCACACAAGATCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: KIHSRLELKPRTGPSLSSWRSQI*HTRSSA Trigger: AGCAGAAGATCTTGTGTGGCAAATCTGAGAACGCCA...ACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGAGTGTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR CCA 90 bp | CGTGCCAGAATAAGAATTTATTGGGAAGACAAAGGATGTGTGTTGCATTTAAAATTTCTCAGTTCATGCTaGGCCTGCAGCTCGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: RARIRIYWEDKGCVLHLKFLSSC*ACSSIS Trigger: GGAGATCGAGCTGCAGGCCCAGCATGAACTGAGAAA...TTTTAAATGCAACACACATCCTTTGTCTTCCCAATAAATTCTTATTCTGGCACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| 3UTR CAA 72 bp | TTATTAAAGCACAGCATTGCATATGTAAATATGGCTTaGTGTGAGTATTGTAGGCTCCCCAAGACAGACTTT | + |
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Preference number: 4 (lower is better) Translates to: LLKHSIAYVNMA*CEYCRLPKTDF Trigger: AAAGTCTGTCTTGGGGAGCCTACAATACTCACACAAAGCCATATTTACATATGCAATGCTGTGCTTTAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR CAA 90 bp | TCTAGGCTTGAACTGAAGCCAAGAACTGGTCCGTCTTTGTCCAGTGCGGTGACTTATCACAAGCATTGGTaGTGGCACAGGGATTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: SRLELKPRTGPSLSSAVTYHKHW*WHRDCK Trigger: CTTGCAATCCCTGTGCCACAACCAATGCTTGTGATA...AGTCACCGCACTGGACAAAGACGGACCAGTTCTTGGCTTCAGTTCAAGCCTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR CAA 90 bp | CAACCAGATCCTCCACACTCAACGGAGTTATTTACAGTCACATTTAGAGAAGTTGTTGTGGCACAGGGATaGCAAGGGAGCTTGCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: QPDPPHSTELFTVTFREVVVAQG*QGSLQS Trigger: GGACTGCAAGCTCCCTTGCAATCCCTGTGCCACAAC...AACTTCTCTAAATGTGACTGTAAATAACTCCGTTGAGTGTGGAGGATCTGGTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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| CDS-3UTR CAA 90 bp | CGTGCCAGAATAAGAATTTATTGGGAAGACAAAGGATGTGTGTTGCATTTAAAAGGATTGCAAGGGAGCTaGCAGTCCTCGCTCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: RARIRIYWEDKGCVLHLKGLQGS*QSSLSS Trigger: GCTGGAGAGCGAGGACTGCAAGCTCCCTTGCAATCC...TTTTAAATGCAACACACATCCTTTGTCTTCCCAATAAATTCTTATTCTGGCACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018399.3 |
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