Pregenerated sensors for KRT28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055937Ensembl transcript IDs: ENSMUST00000006963.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GACACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTCATTTCCATTCTCCCTaGGATTTAGGCTCCGCCCCC | + |
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Preference number: 2 (lower is better) Translates to: DTNTQHPLKVTKKTGILSHFHSP*DLGSAP Trigger: GGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATG...AGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGTGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| 3UTR TCA 72 bp | CTCATCTGTAATAGAAGAAAGCATTTCCATTCTCCCTaGGATTTAGGCTCCGCCCCCAAGTTACTCTATCCC | + |
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Preference number: 3 (lower is better) Translates to: LICNRRKHFHSP*DLGSAPKLLYP Trigger: GGGATAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTTCTTCTATTACAGATGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | AAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTATCCTCCCACCAGGAGCACTaGCCAGTGTCCCTCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: KAFPFSLRFRLRPQVTLSSHQEH*PVSLPK Trigger: CTTTGGGAGGGACACTGGGCAGTGCTCCTGGTGGGA...GGATAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | AAGAAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTAAGGGCACCAGTGGCATaGCTCCCACCAGGAGCACTG | + |
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Preference number: 4 (lower is better) Translates to: KKAFPFSLRFRLRPQVTLRAPVA*LPPGAL Trigger: CAGTGCTCCTGGTGGGAGCCATGCCACTGGTGCCCT...TAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | ACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGCAGCTCGGTCCTGGCTaGGGTGGCGGCGCCCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: TNTQHPLKVTKKTGILSKQLGPG*GGGAQV Trigger: GACTTGGGCGCCGCCACCTCAGCCAGGACCGAGCTG...CTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | AAGAAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTACGCGCCGCAACCCATTaGTGTCTGCCTCGACATTTT | + |
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Preference number: 4 (lower is better) Translates to: KKAFPFSLRFRLRPQVTLRAATH*CLPRHF Trigger: AAAATGTCGAGGCAGACATCAATGGGTTGCGGCGCG...TAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | CAGGTATTTTGTCTAAGGTTCCTCATCTGTAATAGAAGAAAGCATTTCCATTCTGCTCCCAGCAAAGCCTaGGCCTCCGCTGGGCGGCCT | + |
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Preference number: 4 (lower is better) Translates to: QVFCLRFLICNRRKHFHSAPSKA*ASAGRP Trigger: AGGCCGCCCAGCGGAGGCGCAGGCTTTGCTGGGAGC...AGAATGGAAATGCTTTCTTCTATTACAGATGAGGAACCTTAGACAAAATACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | CAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTCATAGGCCTCGGCGTCCCTaGGGTTCTGCTCAGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QHPLKVTKKTGILSKVPHRPRRP*GSAQPG Trigger: CCCTGGCTGAGCAGAACCGCAGGGACGCCGAGGCCT...ATGAGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | AAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTATCCTCGTACTGCAGCTCTTaGTCCGTTCTGCAGAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: KAFPFSLRFRLRPQVTLSSYCSS*SVLQRV Trigger: AACCCTCTGCAGAACGGACCAAGAGCTGCAGTACGA...GGATAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | GACACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTCGGTCCTGGCTGAGGTaGCGGCGCCCAAGTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: DTNTQHPLKVTKKTGILSRSWLR*RRPSHW Trigger: CCAATGACTTGGGCGCCGCCACCTCAGCCAGGACCG...AGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | ACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGCTGTCAGCTCGGTCCTaGCTGAGGTGGCGGCGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: TNTQHPLKVTKKTGILSKLSARS*LRWRRP Trigger: TGGGCGCCGCCACCTCAGCCAGGACCGAGCTGACAG...CTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | AAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTATCCTTTTCCTCGATGGAGTaGATCCTGGAGGACAGCACC | + |
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Preference number: 4 (lower is better) Translates to: KAFPFSLRFRLRPQVTLSFSSME*ILEDST Trigger: GGTGCTGTCCTCCAGGATCCACTCCATCGAGGAAAA...GGATAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | AAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTATCCCCCCTTCACTTCCGATaGAGCAAACACCAGAGACAT | + |
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Preference number: 4 (lower is better) Translates to: KAFPFSLRFRLRPQVTLSPLHFR*SKHQRH Trigger: ATGTCTCTGGTGTTTGCTTCATCGGAAGTGAAGGGG...GGATAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTT 49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | AAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTATCCTCTCATGCCAAGTCTTaGTCTTTCTCTCTAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: KAFPFSLRFRLRPQVTLSSHAKS*SFSLAQ Trigger: CTGAGCTAGAGAGAAAGATCAAGACTTGGCATGAGA...GGATAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | ACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTTCTCCAGGTGGGCCTTaGTGTCCAGCAGCTGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: TQHPLKVTKKTGILSKVPSPGGP*CPAAAH Trigger: ATGAGCAGCTGCTGGACATCAAGGCCCACCTGGAGA...AGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | GACACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTGTAGCTGAGAGGGACTaGAGCTCGATCTCCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: DTNTQHPLKVTKKTGILSVAERD*SSISRV Trigger: GACCCTGGAGATCGAGCTGCAGTCCCTCTCAGCTAC...AGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | ACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTTCTGCTGCTGCAGCGTaGCGCTCTTCTCTTGGAACC | + |
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Preference number: 4 (lower is better) Translates to: TQHPLKVTKKTGILSKVPSAAAA*RSSLGT Trigger: GGTTCCAAGAGAAGAGCGCCACGCTGCAGCAGCAGA...AGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | CAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTCATGATCTGAGCCAGCTGTaGGCAGTAGTTGCCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: QHPLKVTKKTGILSKVPHDLSQL*AVVALG Trigger: ACCGAGGGCAACTACTGCTCACAGCTGGCTCAGATC...ATGAGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | GACACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAGAGTGTTTCGTAGCTaGGAGGGACTGCAGCTCGAT | + |
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Preference number: 4 (lower is better) Translates to: DTNTQHPLKVTKKTGILSRVFRS*EGLQLD Trigger: ATCGAGCTGCAGTCCCTCTCAGCTACGAAACACTCT...AGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | CAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTCATTTGGAGATCTGCTGCTaGAGCGTGGCGCTCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: QHPLKVTKKTGILSKVPHLEICC*SVALFS Trigger: AGAGAAGAGCGCCACGCTGCAGCAGCAGATCTCCAA...ATGAGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | CAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTCATAAGTCATTGGAGATCTaGTGCTGCAGCGTGGCGCTC | + |
|
Preference number: 4 (lower is better) Translates to: QHPLKVTKKTGILSKVPHKSLEI*CCSVAL Trigger: GAGCGCCACGCTGCAGCAGCAGATCTCCAATGACTT...ATGAGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | CAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTCATTCGATCTCCAGGGTCTaGAGGGAGCGTTTCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QHPLKVTKKTGILSKVPHSISRV*RERFSS Trigger: AGAGCTGAAACGCTCCCTGCAGACCCTGGAGATCGA...ATGAGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | GACACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTCAGCCGTGGAAGAGATaGTCTTGCTTTTCAGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: DTNTQHPLKVTKKTGILSQPWKR*SCFSGP Trigger: AGGACCTGAAAAGCAAGATCATCTCTTCCACGGCTG...AGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | CAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTCATGGATACATCTTTGGGTaGATTCCCCGAGGTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: QHPLKVTKKTGILSKVPHGYIFG*IPRGSR Trigger: TCTGGAACCTCGGGGAATTCACCCAAAGATGTATCC...ATGAGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | GTATTTTGTCTAAGGTTCCTCATCTGTAATAGAAGAAAGCATTTCCATTCTCCCAGCACCTTCCCACGCTaGTCTATTTCTTCAACCACC | + |
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Preference number: 4 (lower is better) Translates to: VFCLRFLICNRRKHFHSPSTFPR*SISSTT Trigger: GGTGGTTGAAGAAATAGATCAGCGTGGGAAGGTGCT...GGGAGAATGGAAATGCTTTCTTCTATTACAGATGAGGAACCTTAGACAAAATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | CAGGTATTTTGTCTAAGGTTCCTCATCTGTAATAGAAGAAAGCATTTCCATTCTTTGATGTCCAGCAGCTaGTCATGTTCCAGCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QVFCLRFLICNRRKHFHSLMSSS*SCSSFW Trigger: CCAGAAGCTGGAACATGAGCAGCTGCTGGACATCAA...AGAATGGAAATGCTTTCTTCTATTACAGATGAGGAACCTTAGACAAAATACCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | CAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTCATACATCTTTTCCTCGATaGAGTGGATCCTGGAGGACA | + |
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Preference number: 4 (lower is better) Translates to: QHPLKVTKKTGILSKVPHTSFPR*SGSWRT Trigger: TGTCCTCCAGGATCCACTCCATCGAGGAAAAGATGT...ATGAGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR GCA 90 bp | ACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTGGTCCGTATTTCTCATaGCAAGTCTTGATCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TQHPLKVTKKTGILSKVPGPYFS*QVLIFL Trigger: GAGAAAGATCAAGACTTGGCATGAGAAATACGGACC...AGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | ACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGGTTCCTTCACCAGTGTGGTTTTaGATACATCTTTGGGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: TQHPLKVTKKTGILSKVPSPVWF*IHLWVN Trigger: ATTCACCCAAAGATGTATCCAAAACCACACTGGTGA...AGGAACCTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CCA 90 bp | GTATTTTGTCTAAGGTTCCTCATCTGTAATAGAAGAAAGCATTTCCATTCTCCCTTTTCAGGTCCTCAATaGTTAGATGATACTTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: VFCLRFLICNRRKHFHSPFSGPQ*LDDTCC Trigger: ACAGCAAGTATCATCTAACCATTGAGGACCTGAAAA...GGGAGAATGGAAATGCTTTCTTCTATTACAGATGAGGAACCTTAGACAAAATAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR TCA 90 bp | CAGGTATTTTGTCTAAGGTTCCTCATCTGTAATAGAAGAAAGCATTTCCATTCTCATTTTGGTGAAGGGTaGGTTCGTTTTCATACTTTA | + |
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Preference number: 4 (lower is better) Translates to: QVFCLRFLICNRRKHFHSHFGEG*VRFHTL Trigger: TAAAGTATGAAAACGAACTCACCCTTCACCAAAATG...AGAATGGAAATGCTTTCTTCTATTACAGATGAGGAACCTTAGACAAAATACCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 90 bp | ACTACCAGCAACCGAACCGCCAGCCACGCTGCTCCCAGCAAAGCCTaGGCCTCCGCTGGGCGGCCTGAGGGATCCGGACTGTATGCCAAC | + |
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Preference number: 5 (lower is better) Translates to: TTSNRTASHAAPSKA*ASAGRPEGSGLYAN Trigger: GTTGGCATACAGTCCGGATCCCTCAGGCCGCCCAGCGGAGGCGCAGGCTTTGCTGGGAGCAGCGTGGCTGGCGGTTCGGTTGCTGGTAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 90 bp | AGACATTTCCCAGGGCACCAGTGGCATGGCTCCCACCAGGAGCACTaGCCAGTGTCCCTCCCAAAGCCCAAGAAAATCCACTACCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: RHFPGHQWHGSHQEH*PVSLPKPKKIHYQQ Trigger: TTGCTGGTAGTGGATTTTCTTGGGCTTTGGGAGGGACACTGGGCAGTGCTCCTGGTGGGAGCCATGCCACTGGTGCCCTGGGAAATGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS TCA 90 bp | TTTTCCTCGATGGAGTGGATCCTGGAGGACAGCACCTTCCCACGCTaGTCTATTTCTTCAACCACCGTCTTCACCAGTGTGGTTTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: FSSMEWILEDSTFPR*SISSTTVFTSVVLD Trigger: ATCCAAAACCACACTGGTGAAGACGGTGGTTGAAGAAATAGATCAGCGTGGGAAGGTGCTGTCCTCCAGGATCCACTCCATCGAGGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CAA 90 bp | GACACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTGCGGCGCCCAAGTCATaGGAGATCTGCTGCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: DTNTQHPLKVTKKTGILSAAPKS*EICCCS Trigger: GCTGCAGCAGCAGATCTCCAATGACTTGGGCGCCGC...AGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS CCA 90 bp | CCTTCCCACGCTGATCTATTTCTTCAACCACCGTCTTCACCAGTGTaGTTTTGGATACATCTTTGGGTGAATTCCCCGAGGTTCCAGATT | + |
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Preference number: 5 (lower is better) Translates to: PSHADLFLQPPSSPV*FWIHLWVNSPRFQI Trigger: AATCTGGAACCTCGGGGAATTCACCCAAAGATGTATCCAAAACCACACTGGTGAAGACGGTGGTTGAAGAAATAGATCAGCGTGGGAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CAA 90 bp | AAGAAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTAGTCTGCCTCGACATTTaGGTGAAGGGTGAGTTCGTT | + |
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Preference number: 5 (lower is better) Translates to: KKAFPFSLRFRLRPQVTLVCLDI*VKGEFV Trigger: AACGAACTCACCCTTCACCAAAATGTCGAGGCAGAC...TAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CAA 90 bp | GTATTTTGTCTAAGGTTCCTCATCTGTAATAGAAGAAAGCATTTCCATTCTCCCTTCTCCAGGTGGGCCTaGATGTCCAGCAGCTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: VFCLRFLICNRRKHFHSPFSRWA*MSSSCS Trigger: TGAGCAGCTGCTGGACATCAAGGCCCACCTGGAGAA...GGGAGAATGGAAATGCTTTCTTCTATTACAGATGAGGAACCTTAGACAAAATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CAA 90 bp | AAGAAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTATTCTCATGCCAAGTCTaGATCTTTCTCTCTAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: KKAFPFSLRFRLRPQVTLFSCQV*IFLSSS Trigger: TGAGCTAGAGAGAAAGATCAAGACTTGGCATGAGAA...TAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CAA 90 bp | AAGAAAGCATTTCCATTCTCCCTGAGATTTAGGCTCCGCCCCCAAGTTACTCTATTCACCAGTGTGGTTTaGGATACATCTTTGGGTGAA | + |
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Preference number: 5 (lower is better) Translates to: KKAFPFSLRFRLRPQVTLFTSVV*DTSLGE Trigger: TTCACCCAAAGATGTATCCAAAACCACACTGGTGAA...TAGAGTAACTTGGGGGCGGAGCCTAAATCTCAGGGAGAATGGAAATGCTTTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CAA 90 bp | GTATTTTGTCTAAGGTTCCTCATCTGTAATAGAAGAAAGCATTTCCATTCTCCCACCCTCTGCTCAGCCTaGCCGTTGCTCATCTTAGAC | + |
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Preference number: 5 (lower is better) Translates to: VFCLRFLICNRRKHFHSPTLCSA*PLLILD Trigger: GTCTAAGATGAGCAACGGCAAGGCTGAGCAGAGGGT...GGGAGAATGGAAATGCTTTCTTCTATTACAGATGAGGAACCTTAGACAAAATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS-3UTR CAA 90 bp | ACAAACACCCAGCATCCTTTGAAAGTCACTAAGAAAACAGGTATTTTGTCTAAGTACTCTGCTCGCATGTaGTTCAGAAGGACGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: TNTQHPLKVTKKTGILSKYSARM*FRRTVR Trigger: CCTCACCGTCCTTCTGAACAACATGCGAGCAGAGTA...CTTAGACAAAATACCTGTTTTCTTAGTGACTTTCAAAGGATGCTGGGTGTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | AACCGAACCGCCAGCCACGCTGCTCCCAGCAAAGCCTaGGCCTCCGCTGGGCGGCCTGAGGGATCCGGACTG | + |
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Preference number: 6 (lower is better) Translates to: NRTASHAAPSKA*ASAGRPEGSGL Trigger: CAGTCCGGATCCCTCAGGCCGCCCAGCGGAGGCGCAGGCTTTGCTGGGAGCAGCGTGGCTGGCGGTTCGGTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS TCA 72 bp | TGCTCCCAGCAAAGCCTGCGCCTCCGCTGGGCGGCCTaGGGGATCCGGACTGTATGCCAACGTGCCTGGATC | + |
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Preference number: 6 (lower is better) Translates to: CSQQSLRLRWAA*GIRTVCQRAWI Trigger: GATCCAGGCACGTTGGCATACAGTCCGGATCCCTCAGGCCGCCCAGCGGAGGCGCAGGCTTTGCTGGGAGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | AAAATCCACTACCAGCAACCGAACCGCCAGCCACGCTaGTCCCAGCAAAGCCTGCGCCTCCGCTGGGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: KIHYQQPNRQPR*SQQSLRLRWAA Trigger: GGCCGCCCAGCGGAGGCGCAGGCTTTGCTGGGAGCAGCGTGGCTGGCGGTTCGGTTGCTGGTAGTGGATTTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | GAGGTGGCGGCGCCCAAGTCATTGGAGATCTGCTGCTaGAGCGTGGCGCTCTTCTCTTGGAACCAGGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: EVAAPKSLEICC*SVALFSWNQAS Trigger: CGAGGCCTGGTTCCAAGAGAAGAGCGCCACGCTGCAGCAGCAGATCTCCAATGACTTGGGCGCCGCCACCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | GCTGAGGTGGCGGCGCCCAAGTCATTGGAGATCTGCTaGTGCAGCGTGGCGCTCTTCTCTTGGAACCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: AEVAAPKSLEIC*CSVALFSWNQA Trigger: GGCCTGGTTCCAAGAGAAGAGCGCCACGCTGCAGCAGCAGATCTCCAATGACTTGGGCGCCGCCACCTCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | CCAGGGCACCAGTGGCATGGCTCCCACCAGGAGCACTaGCCAGTGTCCCTCCCAAAGCCCAAGAAAATCCAC | + |
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Preference number: 6 (lower is better) Translates to: PGHQWHGSHQEH*PVSLPKPKKIH Trigger: GTGGATTTTCTTGGGCTTTGGGAGGGACACTGGGCAGTGCTCCTGGTGGGAGCCATGCCACTGGTGCCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS CCA 72 bp | CAAACACCAGAGACATTTCCCAGGGCACCAGTGGCATaGCTCCCACCAGGAGCACTGCCCAGTGTCCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: QTPETFPRAPVA*LPPGALPSVPP Trigger: GGGAGGGACACTGGGCAGTGCTCCTGGTGGGAGCCATGCCACTGGTGCCCTGGGAAATGTCTCTGGTGTTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS CCA 72 bp | TCTGCAGGGAGCGTTTCAGCTCTGTCAGCTCGGTCCTaGCTGAGGTGGCGGCGCCCAAGTCATTGGAGATCT | + |
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Preference number: 6 (lower is better) Translates to: SAGSVSALSARS*LRWRRPSHWRS Trigger: AGATCTCCAATGACTTGGGCGCCGCCACCTCAGCCAGGACCGAGCTGACAGAGCTGAAACGCTCCCTGCAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | CACTCAGGGATTCGTACTGCAGCTCTTGGTCCGTTCTaGAGAGGGTTAGCTCGTCAAGGACGCGCCGCAACC | + |
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Preference number: 6 (lower is better) Translates to: HSGIRTAALGPF*RGLARQGRAAT Trigger: GGTTGCGGCGCGTCCTTGACGAGCTAACCCTCTGCAGAACGGACCAAGAGCTGCAGTACGAATCCCTGAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS TCA 72 bp | TCTCGTTTCCAGAGAGGAGACCCCCTTCACTTCCGATaGAGCAAACACCAGAGACATTTCCCAGGGCACCAG | + |
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Preference number: 6 (lower is better) Translates to: SRFQRGDPLHFR*SKHQRHFPGHQ Trigger: CTGGTGCCCTGGGAAATGTCTCTGGTGTTTGCTTCATCGGAAGTGAAGGGGGTCTCCTCTCTGGAAACGAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | TCAAGTCCACGGCACGATCCCGGTCCGTATTTCTCATaGCAAGTCTTGATCTTTCTCTCTAGCTCAGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SSPRHDPGPYFS*QVLIFLSSSEL Trigger: CAACTCTGAGCTAGAGAGAAAGATCAAGACTTGGCATGAGAAATACGGACCGGGATCGTGCCGTGGACTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS GCA 72 bp | TCTTGCTTTTCAGGTCCTCAATGGTTAGATGATACTTaGTGTAGTCACGGTCAAGTCCACGGCACGATCCCG | + |
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Preference number: 6 (lower is better) Translates to: SCFSGPQWLDDT*CSHGQVHGTIP Trigger: CGGGATCGTGCCGTGGACTTGACCGTGACTACAGCAAGTATCATCTAACCATTGAGGACCTGAAAAGCAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS CCA 72 bp | GCTGATCTATTTCTTCAACCACCGTCTTCACCAGTGTaGTTTTGGATACATCTTTGGGTGAATTCCCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: ADLFLQPPSSPV*FWIHLWVNSPR Trigger: CCTCGGGGAATTCACCCAAAGATGTATCCAAAACCACACTGGTGAAGACGGTGGTTGAAGAAATAGATCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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| CDS CAA 72 bp | TCTATTTCTTCAACCACCGTCTTCACCAGTGTGGTTTaGGATACATCTTTGGGTGAATTCCCCGAGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SISSTTVFTSVV*DTSLGEFPEVP Trigger: TGGAACCTCGGGGAATTCACCCAAAGATGTATCCAAAACCACACTGGTGAAGACGGTGGTTGAAGAAATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006963.3 |
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