Pregenerated sensors for KRT27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017588Ensembl transcript IDs: ENSMUST00000017732.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TCTATTAGGAGCTCATCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGATCCAGCCCCCAAGGCTaGTCCCGCGCTGGAGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: SIRSSSRLTGEKQKHNVGSSPQG*SRAGEP Trigger: AGGCTCTCCAGCGCGGGAGCAGCCTTGGGGGCTGGA...TCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGATGAGCTCCTAATAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR TCA 90 bp | GCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTAGGAGCTCATCTCTGTTCAGCAGGACGGTaGGGTCCACGCCCGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ASPERKSKNVTNLLGAHLCSAGR*GPRPGL Trigger: CAGCCCCGGGCGTGGACCTCACCGTCCTGCTGAACA...GAGATGAGCTCCTAATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | AACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTGCCCGGCACTCCGCATaGGTTTCCAGCCCCCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: NRKTFIEASPERKSKNVTARHSA*VSSPQG Trigger: GCCTTGGGGGCTGGAAACGCATGCGGAGTGCCGGGC...AGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | AGGAGCTCATCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCATCGTCTGAAATCTGCTaGTGCAGGGAGGCGCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: RSSSRLTGEKQKHNVGKASSEIC*CREALF Trigger: GAAGAGCGCCTCCCTGCAGCAGCAGATTTCAGACGA...TGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGATGAGCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | AGGAGCTCATCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCATCATATTCCAGCTTCTaGCCCTCCGTCTCCGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RSSSRLTGEKQKHNVGKASYSSF*PSVSVL Trigger: GAGGACGGAGACGGAGGGCCAGAAGCTGGAATATGA...TGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGATGAGCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | TCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCATTTAGATTTCCGGAGAGGAGGCCGTaGTCATTCGCTGTGAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: SRLTGEKQKHNVGKAFRFPERRP*SFAVKA Trigger: GGCCTTCACAGCGAATGAGCACGGCCTCCTCTCCGG...AAATCTAAATGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR TCA 90 bp | AGGAGCTCATCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCAGGCGAATCTTTTGTCTaGTTTCCGGGTCTTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: RSSSRLTGEKQKHNVGKAGESFV*FPGLPW Trigger: CCAAGGAAGACCCGGAAATCAGACAAAAGATTCGCC...TGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGATGAGCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | ACTTGCAACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATCCTCCAGCGGCGCACTaGAGAGCCTGCATTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TCNRKTFIEASPERKSKNPPAAH*RACISS Trigger: GGAGGAAATGCAGGCTCTGCAGTGCGCCGCTGGAGG...ATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTTGCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | ACTTGCAACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATCCCCTGCCAATGAACTaGCCCCAAAGGCGCAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: TCNRKTFIEASPERKSKNPLPMN*PQRRRR Trigger: TCTCCTGCGCCTTTGGGGGCAGTTCATTGGCAGGGG...ATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTTGCAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | GCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTAGGAGCTCATCTCGCATCGTCTGAAATCTaGTGCTGCAGGGAGGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: ASPERKSKNVTNLLGAHLASSEI*CCREAL Trigger: GAGCGCCTCCCTGCAGCAGCAGATTTCAGACGATGC...GAGATGAGCTCCTAATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | GGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCCGTTCCTGGCTGAGGTaGTGGCTCCAGCATCGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GRRLLKHHQRESQRMSLIRSWLR*WLQHRL Trigger: CAGACGATGCTGGAGCCACCACCTCAGCCAGGAACG...GATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR TCA 90 bp | ACTTGCAACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATCGTGCTCATTCGCTGTaGAGGCCCCACAAGAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: TCNRKTFIEASPERKSKNRAHSL*RPHKKH Trigger: GTGCTTCTTGTGGGGCCTTCACAGCGAATGAGCACG...ATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTTGCAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR TCA 90 bp | TCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCATTTAGATTTTCTCCAGGTGGGCCTTaGCATTCAGCAGCTGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: SRLTGEKQKHNVGKAFRFSPGGP*HSAAAH Trigger: ATGAGCAGCTGCTGAATGTCAAGGCCCACCTGGAGA...AAATCTAAATGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | TCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCATTTAGATTTTGGAGGAGAGAACCTTaGCACGGGGGTCTAACTCTT | + |
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Preference number: 4 (lower is better) Translates to: SRLTGEKQKHNVGKAFRFWRREP*HGGLTL Trigger: AAGAGTTAGACCCCCGTGGCAAGGTTCTCTCCTCCA...AAATCTAAATGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | GGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCCCAGGGTGTGAACTCTaGAGGAGAGAACCTTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: GRRLLKHHQRESQRMSLIPGCEL*RREPCH Trigger: GTGGCAAGGTTCTCTCCTCCAGAGTTCACACCCTGG...GATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR TCA 90 bp | AGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATAAGTTCGTTCCTGGCTaGGGTGGTGGCTCCAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: RRLLKHHQRESQRMSLIYKFVPG*GGGSSI Trigger: GATGCTGGAGCCACCACCTCAGCCAGGAACGAACTT...ATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR TCA 90 bp | GGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTTCTCTTCCAGGGTGTaGACTCTGGAGGAGAGAACC | + |
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Preference number: 4 (lower is better) Translates to: GRRLLKHHQRESQRMSLIFSSRV*TLEERT Trigger: GGTTCTCTCCTCCAGAGTTCACACCCTGGAAGAGAA...GATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | GAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTAGGAGCTCATATTGGCCTCCTCCAGTaGTTGCACGTTCTCCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: EASPERKSKNVTNLLGAHIGLLQ*LHVLQV Trigger: TACCTGGAGAACGTGCAAGCACTGGAGGAGGCCAAT...ATGAGCTCCTAATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | ACTTGCAACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATTCTGAAATCTGCTGCTaGAGGGAGGCGCTCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: TCNRKTFIEASPERKSKNSEICC*REALFS Trigger: AGAGAAGAGCGCCTCCCTGCAGCAGCAGATTTCAGA...ATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTTGCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | GGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCGCATCGACGCTCTGGTaGAGTGCCAGTTCATTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GRRLLKHHQRESQRMSLIASTLW*SASSFS Trigger: TGAGAATGAACTGGCACTCCACCAGAGCGTCGATGC...GATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | ACTTGCAACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATCTGAGTGTTTCCAGCTaGACCTCAAGGTCGGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TCNRKTFIEASPERKSKNLSVSS*TSRSVL Trigger: CAGAACCGACCTTGAGGTCCAGCTGGAAACACTCAG...ATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTTGCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | GCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTAGGAGCTCATCTCCCAGAGAGTGTTTCATaGCTAAGAGGGACTGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: ASPERKSKNVTNLLGAHLPESVS*LRGTVA Trigger: AGCTACAGTCCCTCTTAGCCATGAAACACTCTCTGG...GAGATGAGCTCCTAATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR GCA 90 bp | GCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTAGGAGCTCATCTCCTTGCGTTGTCATTTTaGAGGATGATGTTGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: ASPERKSKNVTNLLGAHLLALSF*RMMLAL Trigger: CAACGCCAACATCATCCTGCAAAATGACAACGCAAG...GAGATGAGCTCCTAATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR TCA 90 bp | AACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTTCTGCTCGGTCTTGTTaGCTTTGGTGGATTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: NRKTFIEASPERKSKNVTSARSC*LWWISL Trigger: AAGAGAAATCCACCAAAGTCAACAAGACCGAGCAGA...AGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | AACAGGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTTCTATCTCCAGGGTTTaGAGAGTCCGTTTCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: NRKTFIEASPERKSKNVTSISRV*RVRFIS Trigger: AGAGATGAAACGGACTCTCCAAACCCTGGAGATAGA...AGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCCTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CCA 90 bp | GAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTAGGAGCTCATTTTCCGGGTCTTCCTTaGCCTTTTGCCTTAACACAA | + |
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Preference number: 4 (lower is better) Translates to: EASPERKSKNVTNLLGAHFPGLP*PFALTQ Trigger: TTGTGTTAAGGCAAAAGGCCAAGGAAGACCCGGAAA...ATGAGCTCCTAATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 90 bp | GCTTCCGATGCCCGGCACTCCGCATGCGTTTCCAGCCCCCAAGGCTaGTCCCGCGCTGGAGAGCCTCACAGAGCCCAGCCGTCTGGATGC | + |
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Preference number: 5 (lower is better) Translates to: ASDARHSACVSSPQG*SRAGEPHRAQPSGC Trigger: GCATCCAGACGGCTGGGCTCTGTGAGGCTCTCCAGCGCGGGAGCAGCCTTGGGGGCTGGAAACGCATGCGGAGTGCCGGGCATCGGAAGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 90 bp | CCCAAAGGCGCAGGAGAAGCCGCTTCCGATGCCCGGCACTCCGCATaGGTTTCCAGCCCCCAAGGCTGCTCCCGCGCTGGAGAGCCTCAC | + |
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Preference number: 5 (lower is better) Translates to: PKGAGEAASDARHSA*VSSPQGCSRAGEPH Trigger: GTGAGGCTCTCCAGCGCGGGAGCAGCCTTGGGGGCTGGAAACGCATGCGGAGTGCCGGGCATCGGAAGCGGCTTCTCCTGCGCCTTTGGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 90 bp | CTGCCAATGAACTGCCCCCAAAGGCGCAGGAGAAGCCGCTTCCGATaGCCGGCACTCCGCATGCGTTTCCAGCCCCCAAGGCTGCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: LPMNCPQRRRRSRFR*PALRMRFQPPRLLP Trigger: CGGGAGCAGCCTTGGGGGCTGGAAACGCATGCGGAGTGCCGGGCATCGGAAGCGGCTTCTCCTGCGCCTTTGGGGGCAGTTCATTGGCAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | AGGAGCTCATCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCAACCCTCCGCAAGCCATaGATGTCAGCATCGACGCTC | + |
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Preference number: 5 (lower is better) Translates to: RSSSRLTGEKQKHNVGKATLRKP*MSASTL Trigger: GAGCGTCGATGCTGACATCAATGGCTTGCGGAGGGT...TGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGATGAGCTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | TCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCATTTAGATTTATGGTGACCTTCTCATaGCCGGAGAGGAGGCCGTGC | + |
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Preference number: 5 (lower is better) Translates to: SRLTGEKQKHNVGKAFRFMVTFS*PERRPC Trigger: GCACGGCCTCCTCTCCGGCAATGAGAAGGTCACCAT...AAATCTAAATGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | AGGAGCTCATCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCACTCTATCTCCAGGGTTaGGAGAGTCCGTTTCATCTC | + |
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Preference number: 5 (lower is better) Translates to: RSSSRLTGEKQKHNVGKALYLQG*ESPFHL Trigger: GAGATGAAACGGACTCTCCAAACCCTGGAGATAGAG...TGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGATGAGCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 90 bp | TCTTGCGTTGTCATTTTGCAGGATGATGTTGGCGTTGTGTGCAGTTaGAGAGATGATCTGGGTCCTGAGGTCATCAATGATGGGGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: SCVVILQDDVGVVCS*RDDLGPEVINDGEV Trigger: TACTTCCCCATCATTGATGACCTCAGGACCCAGATCATCTCTGCAACTGCACACAACGCCAACATCATCCTGCAAAATGACAACGCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | GGAAGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTTCTCCAGGTGGGCCTaGACATTCAGCAGCTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GRRLLKHHQRESQRMSLIFSRWA*TFSSCS Trigger: TGAGCAGCTGCTGAATGTCAAGGCCCACCTGGAGAA...GATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | ACTAATCTATTAGGAGCTCATCTCGGCTCACTGGAGAGAAGCAGAAACATAACGATCCTCTGCTCGGTCTaGTTGACTTTGGTGGATTTC | + |
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Preference number: 5 (lower is better) Translates to: TNLLGAHLGSLERSRNITILCSV*LTLVDF Trigger: GAAATCCACCAAAGTCAACAAGACCGAGCAGAGGAT...CGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGATGAGCTCCTAATAGATTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | TCTCGGCTCACTGGAGAGAAGCAGAAACATAACGTAGGAAAAGCATTTAGATTTTCGGTCTTGTTGACTTaGGTGGATTTCTCTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SRLTGEKQKHNVGKAFRFSVLLT*VDFSSR Trigger: CCTGGAAGAGAAATCCACCAAAGTCAACAAGACCGA...AAATCTAAATGCTTTTCCTACGTTATGTTTCTGCTTCTCTCCAGTGAGCCGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | GAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTAGGAGCTCATTTTTGCAGGATGATGTaGGCGTTGTGTGCAGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: EASPERKSKNVTNLLGAHFCRMM*ALCAVA Trigger: TGCAACTGCACACAACGCCAACATCATCCTGCAAAA...ATGAGCTCCTAATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | AGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATCTCTGCTCGGTCTTGTaGACTTTGGTGGATTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: RRLLKHHQRESQRMSLIYLCSVL*TLVDFS Trigger: AGAGAAATCCACCAAAGTCAACAAGACCGAGCAGAG...ATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS-3UTR CAA 90 bp | AGACGTTTATTGAAGCATCACCAGAGAGAAAGTCAAAGAATGTCACTAATCTATTCTTGCGTTGTCATTTaGCAGGATGATGTTGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: RRLLKHHQRESQRMSLIYSCVVI*QDDVGV Trigger: AACGCCAACATCATCCTGCAAAATGACAACGCAAGA...ATAGATTAGTGACATTCTTTGACTTTCTCTCTGGTGATGCTTCAATAAACGTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 72 bp | GCCCGGCACTCCGCATGCGTTTCCAGCCCCCAAGGCTaGTCCCGCGCTGGAGAGCCTCACAGAGCCCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: ARHSACVSSPQG*SRAGEPHRAQP Trigger: CGGCTGGGCTCTGTGAGGCTCTCCAGCGCGGGAGCAGCCTTGGGGGCTGGAAACGCATGCGGAGTGCCGGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 72 bp | GCAGGAGAAGCCGCTTCCGATGCCCGGCACTCCGCATaGGTTTCCAGCCCCCAAGGCTGCTCCCGCGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: AGEAASDARHSA*VSSPQGCSRAG Trigger: TCCAGCGCGGGAGCAGCCTTGGGGGCTGGAAACGCATGCGGAGTGCCGGGCATCGGAAGCGGCTTCTCCTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 72 bp | AACTGCCCCCAAAGGCGCAGGAGAAGCCGCTTCCGATaGCCGGCACTCCGCATGCGTTTCCAGCCCCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: NCPQRRRRSRFR*PALRMRFQPPR Trigger: CCTTGGGGGCTGGAAACGCATGCGGAGTGCCGGGCATCGGAAGCGGCTTCTCCTGCGCCTTTGGGGGCAGTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS TCA 72 bp | TCTCATTGCCGGAGAGGAGGCCGTGCTCATTCGCTGTaGAGGCCCCACAAGAAGCACCGCCCATACCGAGCC | + |
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Preference number: 6 (lower is better) Translates to: SHCRRGGRAHSL*RPHKKHRPYRA Trigger: GGCTCGGTATGGGCGGTGCTTCTTGTGGGGCCTTCACAGCGAATGAGCACGGCCTCCTCTCCGGCAATGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS TCA 72 bp | GTCTTGTTGACTTTGGTGGATTTCTCTTCCAGGGTGTaGACTCTGGAGGAGAGAACCTTGCCACGGGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: VLLTLVDFSSRV*TLEERTLPRGS Trigger: AGACCCCCGTGGCAAGGTTCTCTCCTCCAGAGTTCACACCCTGGAAGAGAAATCCACCAAAGTCAACAAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 72 bp | TGCGTTGTCATTTTGCAGGATGATGTTGGCGTTGTGTaGAGTTGCAGAGATGATCTGGGTCCTGAGGTCATC | + |
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Preference number: 6 (lower is better) Translates to: CVVILQDDVGVV*SCRDDLGPEVI Trigger: GATGACCTCAGGACCCAGATCATCTCTGCAACTGCACACAACGCCAACATCATCCTGCAAAATGACAACGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS CAA 72 bp | AGTCTTGCGTTGTCATTTTGCAGGATGATGTTGGCGTaGTGTGCAGTTGCAGAGATGATCTGGGTCCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: SLALSFCRMMLA*CAVAEMIWVLR Trigger: CCTCAGGACCCAGATCATCTCTGCAACTGCACACAACGCCAACATCATCCTGCAAAATGACAACGCAAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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| CDS GCA 72 bp | GTCATTTTGCAGGATGATGTTGGCGTTGTGTGCAGTTaGAGAGATGATCTGGGTCCTGAGGTCATCAATGAT | + |
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Preference number: 6 (lower is better) Translates to: VILQDDVGVVCS*RDDLGPEVIND Trigger: ATCATTGATGACCTCAGGACCCAGATCATCTCTGCAACTGCACACAACGCCAACATCATCCTGCAAAATGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017732.3 |
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