RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KRT26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075570

Ensembl transcript IDs: ENSMUST00000100482.3

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGATAAAGACACCTAAGTGTGACTTTCCCAGGAGAAGCCCACATTaGTGCTTGGGTATGTCTCACCCCTGTCCCGAACACCTCTCCATC +
Preference number: 1 (lower is better)
Translates to: LIKTPKCDFPRRSPH*CLGMSHPCPEHLSI
Trigger: GATGGAGAGGTGTTCGGGACAGGGGTGAGACATACCCAAGCATCAATGTGGGCTTCTCCTGGGAAAGTCACACTTAGGTGTCTTTATCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR GCA 90 bp CCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTaGAGCCCAAGTGGCCTGCGACATAGTATACAACAGACACAGTAC +
Preference number: 1 (lower is better)
Translates to: PRKTRNIRNTIRNVW*SPSGLRHSIQQTQY
Trigger: GTACTGTGTCTGTTGTATACTATGTCGCAGGCCACTTGGGCTGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR CCA 90 bp CTTCCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTaGTGCAGCCCAAGTGGCCTGCGACATAGTATACAACAGACACAG +
Preference number: 1 (lower is better)
Translates to: LPRKTRNIRNTIRNV*CSPSGLRHSIQQTQ
Trigger: CTGTGTCTGTTGTATACTATGTCGCAGGCCACTTGGGCTGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR TCA 90 bp TGGCTTTTTAGTAAATCTCCAACTCTGCTTCATATTGTCTGTCCATaGAATTCCTTTCTCTGTCAAAGCCAAGGGTCCTGGTGGCTCTGT +
Preference number: 1 (lower is better)
Translates to: WLFSKSPTLLHIVCP*NSFLCQSQGSWWLC
Trigger: ACAGAGCCACCAGGACCCTTGGCTTTGACAGAGAAAGGAATTTCATGGACAGACAATATGAAGCAGAGTTGGAGATTTACTAAAAAGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR TCA 90 bp AGTGTAGGAAGAAGAAGAAGAAGAGGAAACTTGAGTCTAGTCGTTTaGCTTGTAGGAACAGGCATGAATGATTTTCTTGCATTACTTGAC +
Preference number: 1 (lower is better)
Translates to: SVGRRRRRGNLSLVV*LVGTGMNDFLALLD
Trigger: GTCAAGTAATGCAAGAAAATCATTCATGCCTGTTCCTACAAGTCAAACGACTAGACTCAAGTTTCCTCTTCTTCTTCTTCTTCCTACACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR CCA 90 bp AAGGAAACTATTTTTAAGTTTAAACCTTCTTCTAAGCTGCACCCTTaGAGCAATATTGAAGAAATGAGAGGGTCGTTTCCTGTAACCTTT +
Preference number: 1 (lower is better)
Translates to: KETIFKFKPSSKLHP*SNIEEMRGSFPVTF
Trigger: AAAGGTTACAGGAAACGACCCTCTCATTTCTTCAATATTGCTCCAAGGGTGCAGCTTAGAAGAAGGTTTAAACTTAAAAATAGTTTCCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR TCA 90 bp CGTCAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCCTGGTGGCTCTGTTTaGGTTGCCCAAGACAGTGTA +
Preference number: 2 (lower is better)
Translates to: RQAKSYFLRTSMIHHSEFPGGSV*VAQDSV
Trigger: TACACTGTCTTGGGCAACTCAAACAGAGCCACCAGG...AAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTGACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR CCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTAAGCCAAGGGTCCTGGTaGCTCTGTTTGAGTTGCCCA +
Preference number: 2 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLSQGSW*LCLSCP
Trigger: TGGGCAACTCAAACAGAGCCACCAGGACCCTTGGCT...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR CCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTACAAAGCCAAGGGTCCTaGTGGCTCTGTTTGAGTTGC +
Preference number: 2 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLQSQGS*WLCLSC
Trigger: GCAACTCAAACAGAGCCACCAGGACCCTTGGCTTTG...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR TCA 90 bp ATAGTATACAACAGACACAGTACACATAAACCAACACCTCCAGAGACACCCGTCTTGAGTCTAGTCGTTTaGCTTGTAGGAACAGGCATG +
Preference number: 2 (lower is better)
Translates to: IVYNRHSTHKPTPPETPVLSLVV*LVGTGM
Trigger: CATGCCTGTTCCTACAAGTCAAACGACTAGACTCAA...GACGGGTGTCTCTGGAGGTGTTGGTTTATGTGTACTGTGTCTGTTGTATACTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR TCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTACCTTTCTCCTTTGTCTaGACCACACCTCCATTAATC +
Preference number: 2 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLPFSFV*TTPPLI
Trigger: GATTAATGGAGGTGTGGTTCAGACAAAGGAGAAAGG...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR GCA 90 bp AAGAGCTCTATTTATGGAATGGCCAGAGGTTCACAAAATAAAATCCAAAGCTACGTAAATCTCCAACTCTaGTTCATATTGTCTGTCCAT +
Preference number: 2 (lower is better)
Translates to: KSSIYGMARGSQNKIQSYVNLQL*FILSVH
Trigger: ATGGACAGACAATATGAAGCAGAGTTGGAGATTTAC...GTAGCTTTGGATTTTATTTTGTGAACCTCTGGCCATTCCATAAATAGAGCTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR TCA 72 bp ACACCTAAGTGTGACTTTCCCAGGAGAAGCCCACATTaGTGCTTGGGTATGTCTCACCCCTGTCCCGAACAC +
Preference number: 3 (lower is better)
Translates to: TPKCDFPRRSPH*CLGMSHPCPEH
Trigger: GTGTTCGGGACAGGGGTGAGACATACCCAAGCATCAATGTGGGCTTCTCCTGGGAAAGTCACACTTAGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR TCA 72 bp AGCACTGGGCTGGGTAGACAGATAGGAACTTTATGGTaGCACGGGAAGAAAAGCATGAAAACCGTTAGGCTT +
Preference number: 3 (lower is better)
Translates to: STGLGRQIGTLW*HGKKSMKTVRL
Trigger: AAGCCTAACGGTTTTCATGCTTTTCTTCCCGTGTCACCATAAAGTTCCTATCTGTCTACCCAGCCCAGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR CAA 90 bp ATAGTATACAACAGACACAGTACACATAAACCAACACCTCCAGAGACACCCGTCACACTCCTTTCTCCTTaGTCTGAACCACACCTCCAT +
Preference number: 3 (lower is better)
Translates to: IVYNRHSTHKPTPPETPVTLLSP*SEPHLH
Trigger: ATGGAGGTGTGGTTCAGACAAAGGAGAAAGGAGTGT...GACGGGTGTCTCTGGAGGTGTTGGTTTATGTGTACTGTGTCTGTTGTATACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR TCA 72 bp AGTAAATCTCCAACTCTGCTTCATATTGTCTGTCCATaGAATTCCTTTCTCTGTCAAAGCCAAGGGTCCTGG +
Preference number: 3 (lower is better)
Translates to: SKSPTLLHIVCP*NSFLCQSQGSW
Trigger: CCAGGACCCTTGGCTTTGACAGAGAAAGGAATTTCATGGACAGACAATATGAAGCAGAGTTGGAGATTTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR TCA 72 bp ATGGCCAGAGGTTCACAAAATAAAATCCAAAGCTACTaGGGTTGTCCCATATCTTGGAAAGGCTCACCAAAG +
Preference number: 3 (lower is better)
Translates to: MARGSQNKIQSY*GCPISWKGSPK
Trigger: CTTTGGTGAGCCTTTCCAAGATATGGGACAACCTCAGTAGCTTTGGATTTTATTTTGTGAACCTCTGGCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR-3UTR CAA 90 bp CGTCAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTATTTTCTTGCATTACTaGACCAAAGGGATTCTGCAG +
Preference number: 3 (lower is better)
Translates to: RQAKSYFLRTSMIHHSEFIFLHY*TKGILQ
Trigger: CTGCAGAATCCCTTTGGTCAAGTAATGCAAGAAAAT...AAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTGACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp CCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCAGCCCACCCGGCCACAAAGCCTaGCCCTCCTCTGGACAGCCT +
Preference number: 4 (lower is better)
Translates to: PRKTRNIRNTIRNVWCSPPGHKA*PSSGQP
Trigger: AGGCTGTCCAGAGGAGGGGCAGGCTTTGTGGCCGGG...TGGGCTGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp CCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCAGCCCACTCCTCTGGACAGCCTaGCAGACCCAGCTCGAGAAC +
Preference number: 4 (lower is better)
Translates to: PRKTRNIRNTIRNVWCSPLLWTA*QTQLEN
Trigger: GTTCTCGAGCTGGGTCTGTCAGGCTGTCCAGAGGAG...TGGGCTGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp TTGTCTGTCCATGAAATTCCTTTCTCTGTCAAAGCCAAGGGTCCTGGTGGCTCTGGGTGCAAGAAAAGCTaGCTTCCGCTCCAGGCCCAA +
Preference number: 4 (lower is better)
Translates to: LSVHEIPFSVKAKGPGGSGCKKS*LPLQAQ
Trigger: TTGGGCCTGGAGCGGAAGGCAGCTTTTCTTGCACCC...AGAGCCACCAGGACCCTTGGCTTTGACAGAGAAAGGAATTTCATGGACAGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTACGGATCTGCTGCAGCTaGTCCTCCCGCGCCCCAATC +
Preference number: 4 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLRICCS*SSRAPI
Trigger: GATTGGGGCGCGGGAGGAGCAGCTGCAGCAGATCCG...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp TTGTCTGTCCATGAAATTCCTTTCTCTGTCAAAGCCAAGGGTCCTGGTGGCTCTCGGTTAGATCCACGCTaGGGGCTGCGTTCATCTCCA +
Preference number: 4 (lower is better)
Translates to: LSVHEIPFSVKAKGPGGSRLDPR*GLRSSP
Trigger: TGGAGATGAACGCAGCCCCCAGCGTGGATCTAACCG...AGAGCCACCAGGACCCTTGGCTTTGACAGAGAAAGGAATTTCATGGACAGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp TCCCGAACACCTCTCCATCGACCCTCATGCTTTAGATCTAAGTTAAAAATGGCTTTGATGCCCAGCAGCTaGTCGTGCTCCAGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SRTPLHRPSCFRSKLKMALMPSS*SCSSFW
Trigger: CCAGAAGCTGGAGCACGAGCAGCTGCTGGGCATCAA...AGCCATTTTTAACTTAGATCTAAAGCATGAGGGTCGATGGAGAGGTGTTCGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTACGTTTCTGGCTGCTGTaGCTGCTCCTGCGTCATCTG +
Preference number: 4 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLRFWLL*LLLRHL
Trigger: CAGATGACGCAGGAGCAGCCACAGCAGCCAGAAACG...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
3UTR CAA 72 bp TTTCTCTGTCAAAGCCAAGGGTCCTGGTGGCTCTGTTaGAGTTGCCCAAGACAGTGTAGGAAGAAGAAGAAG +
Preference number: 4 (lower is better)
Translates to: FLCQSQGSWWLC*SCPRQCRKKKK
Trigger: CTTCTTCTTCTTCCTACACTGTCTTGGGCAACTCAAACAGAGCCACCAGGACCCTTGGCTTTGACAGAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp GGAACAGGCATGAATGATTTTCTTGCATTACTTGACCAAAGGGATTCTGCAGGGTGCTCCTGCGTCATCTaGAATCTGTTGCTGCAGCGA +
Preference number: 4 (lower is better)
Translates to: GTGMNDFLALLDQRDSAGCSCVI*NLLLQR
Trigger: TCGCTGCAGCAACAGATTTCAGATGACGCAGGAGCA...CCCTGCAGAATCCCTTTGGTCAAGTAATGCAAGAAAATCATTCATGCCTGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTACTCTGCGAAGGCCGTTaGTGTCAGCCTCAACACTCT +
Preference number: 4 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLLCEGR*CQPQHS
Trigger: AGAGTGTTGAGGCTGACACCAACGGCCTTCGCAGAG...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp CCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCAGCCCAGCCTCAACACTCTGGTaGAGAGCCAGTTCATTTTCA +
Preference number: 4 (lower is better)
Translates to: PRKTRNIRNTIRNVWCSPASTLW*RASSFS
Trigger: TGAAAATGAACTGGCTCTGCACCAGAGTGTTGAGGC...TGGGCTGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp CCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCAGCCCACTGGCATTGTCATTTTaGAGGACAAGGTTGGCATTG +
Preference number: 4 (lower is better)
Translates to: PRKTRNIRNTIRNVWCSPLALSF*RTRLAL
Trigger: CAATGCCAACCTTGTCCTTCAAAATGACAATGCCAG...TGGGCTGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp TCCCGAACACCTCTCCATCGACCCTCATGCTTTAGATCTAAGTTAAAAATGGCTCTTCTGCTGAGTCATTaGATTCACTTGCAGGCTTGC +
Preference number: 4 (lower is better)
Translates to: SRTPLHRPSCFRSKLKMALLLSH*IHLQAC
Trigger: GCAAGCCTGCAAGTGAATTCAATGACTCAGCAGAAG...AGCCATTTTTAACTTAGATCTAAAGCATGAGGGTCGATGGAGAGGTGTTCGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp CTTGCATTACTTGACCAAAGGGATTCTGCAGGGGCAGCTTTTTGTTTGATGAATGGAGTGCACTCTCAGTaGAAGGAGGTTACCAAGTTG +
Preference number: 4 (lower is better)
Translates to: LALLDQRDSAGAAFCLMNGVHSQ*KEVTKL
Trigger: CAACTTGGTAACCTCCTTTCACTGAGAGTGCACTCC...ATTCATCAAACAAAAAGCTGCCCCTGCAGAATCCCTTTGGTCAAGTAATGCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTAAGGAGGTTACCAAGTTaGTCTAGCTCTTCAGCCACT +
Preference number: 4 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLRRLPS*SSSSAT
Trigger: AGTGGCTGAAGAGCTAGATCAACTTGGTAACCTCCT...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp TTCTTCCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCACCCCCTGATGCATTTTaGAGAACCACCATTTCCTCC +
Preference number: 4 (lower is better)
Translates to: FFRERPETSEIPSEMSGAPPDAF*RTTISS
Trigger: GGAGGAAATGGTGGTTCTGCAAAATGCATCAGGGGG...TGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGGAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp CTTGCATTACTTGACCAAAGGGATTCTGCAGGGGCAGCTTTTTGTTTGATGAATTTTTCTTCCACGGAGTaGACTCTCAGTGAAAGGAGG +
Preference number: 4 (lower is better)
Translates to: LALLDQRDSAGAAFCLMNFSSTE*TLSERR
Trigger: CCTCCTTTCACTGAGAGTGCACTCCGTGGAAGAAAA...ATTCATCAAACAAAAAGCTGCCCCTGCAGAATCCCTTTGGTCAAGTAATGCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp AAGAGCTCTATTTATGGAATGGCCAGAGGTTCACAAAATAAAATCCAAAGCTACTACCTGACCCCTCGCTaGCAAAGCTTCCTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: KSSIYGMARGSQNKIQSYYLTPR*QSFLQK
Trigger: CTTCTGGAGGAAGCTTTGCCAGCGAGGGGTCAGGTA...GTAGCTTTGGATTTTATTTTGTGAACCTCTGGCCATTCCATAAATAGAGCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTAACCATTTCCTCCTCGTaGTTCTTTTGGAGGTACGTC +
Preference number: 4 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLTISSS*FFWRYV
Trigger: GACGTACCTCCAAAAGAACCACGAGGAGGAAATGGT...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp CGTCAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTTCAGCCACTGTTCTaGCAAATGTTTCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RQAKSYFLRTSMIHHSEFLQPLF*QMFLLL
Trigger: CAGCAGAAGAAACATTTGCCAGAACAGTGGCTGAAG...AAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTGACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp TTCTTCCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCACAAATCCTCAATGACTaGGAAATACCGGCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: FFRERPETSEIPSEMSGAQILND*EIPAAV
Trigger: GACTGCAGCCGGTATTTCTCAGTCATTGAGGATTTG...TGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp CGTCAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTAGAGTCTGCAGATTaGGTTTCAGTTCCATCAGTT +
Preference number: 4 (lower is better)
Translates to: RQAKSYFLRTSMIHHSEFLESAD*VSVPSV
Trigger: AACTGATGGAACTGAAACGCAATCTGCAGACTCTAG...AAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTGACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR GCA 90 bp CAAGCTAAATCGTACTTCCTCAGGACCAGCATGATACATCACTCTGAGTTTCTATCTATCTCTAGAGTCTaGAGATTGCGTTTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: QAKSYFLRTSMIHHSEFLSISRV*RLRFSS
Trigger: GGAACTGAAACGCAATCTGCAGACTCTAGAGATAGA...TAGAAACTCAGAGTGATGTATCATGCTGGTCCTGAGGAAGTACGATTTAGCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp TTCATATTGTCTGTCCATGAAATTCCTTTCTCTGTCAAAGCCAAGGGTCCTGGTAGGCTTGCCATCCTTTaGTTTGTAACTTGTGGATTC +
Preference number: 4 (lower is better)
Translates to: FILSVHEIPFSVKAKGPGRLAIL*FVTCGF
Trigger: GAATCCACAAGTTACAAACCAAAGGATGGCAAGCCT...ACCAGGACCCTTGGCTTTGACAGAGAAAGGAATTTCATGGACAGACAATATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp AAGAGCTCTATTTATGGAATGGCCAGAGGTTCACAAAATAAAATCCAAAGCTACGTTTCAAATCCTCAATaGCTGAGAAATACCGGCTGC +
Preference number: 4 (lower is better)
Translates to: KSSIYGMARGSQNKIQSYVSNPQ*LRNTGC
Trigger: GCAGCCGGTATTTCTCAGTCATTGAGGATTTGAAAC...GTAGCTTTGGATTTTATTTTGTGAACCTCTGGCCATTCCATAAATAGAGCTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR TCA 90 bp TTCTTCCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCAAAATGTTTCTTCTGCTaGGTCATTGAATTCACTTGC +
Preference number: 4 (lower is better)
Translates to: FFRERPETSEIPSEMSGAKCFFC*VIEFTC
Trigger: GCAAGTGAATTCAATGACTCAGCAGAAGAAACATTT...TGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGGAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CCA 90 bp TTCTTCCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCATTGGTTTGTAACTTGTaGATTCACTTCTTTGTTCCT +
Preference number: 4 (lower is better)
Translates to: FFRERPETSEIPSEMSGALVCNL*IHFFVP
Trigger: AGGAACAAAGAAGTGAATCCACAAGTTACAAACCAA...TGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGGAAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS GCA 90 bp TCGTTTCTGGCTGCTGTGGCTGCTCCTGCGTCATCTGAAATCTGTTaGTGCAGCGACGCGCTCTTCTCTTTAAAGCTGGCCTCTGCATCT +
Preference number: 5 (lower is better)
Translates to: SFLAAVAAPASSEIC*CSDALFSLKLASAS
Trigger: AGATGCAGAGGCCAGCTTTAAAGAGAAGAGCGCGTCGCTGCAGCAACAGATTTCAGATGACGCAGGAGCAGCCACAGCAGCCAGAAACGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS GCA 90 bp TTTCTGGCTGCTGTGGCTGCTCCTGCGTCATCTGAAATCTGTTGCTaGAGCGACGCGCTCTTCTCTTTAAAGCTGGCCTCTGCATCTTTC +
Preference number: 5 (lower is better)
Translates to: FLAAVAAPASSEICC*SDALFSLKLASASF
Trigger: GAAAGATGCAGAGGCCAGCTTTAAAGAGAAGAGCGCGTCGCTGCAGCAACAGATTTCAGATGACGCAGGAGCAGCCACAGCAGCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS CCA 90 bp TGTCGTTTCAAATCCTCAATGACTGAGAAATACCGGCTGCAGTCATaGTCAAGTCTACGGCCTCTGCCGGGCCCACACTTCTCGTACCAG +
Preference number: 5 (lower is better)
Translates to: CRFKSSMTEKYRLQS*SSLRPLPGPHFSYQ
Trigger: CTGGTACGAGAAGTGTGGGCCCGGCAGAGGCCGTAGACTTGACCATGACTGCAGCCGGTATTTCTCAGTCATTGAGGATTTGAAACGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS TCA 90 bp GCAGGTGGTCATAGACAGGATCTGTCGTTTCAAATCCTCAATGACTaGGAAATACCGGCTGCAGTCATGGTCAAGTCTACGGCCTCTGCC +
Preference number: 5 (lower is better)
Translates to: AGGHRQDLSFQILND*EIPAAVMVKSTASA
Trigger: GGCAGAGGCCGTAGACTTGACCATGACTGCAGCCGGTATTTCTCAGTCATTGAGGATTTGAAACGACAGATCCTGTCTATGACCACCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS GCA 90 bp AATCTGTTGCTGCAGCGACGCGCTCTTCTCTTTAAAGCTGGCCTCTaGATCTTTCCGGTTCTGCTCAGCCAAATCTTCATATTCGGCCCT +
Preference number: 5 (lower is better)
Translates to: NLLLQRRALLFKAGL*IFPVLLSQIFIFGP
Trigger: AGGGCCGAATATGAAGATTTGGCTGAGCAGAACCGGAAAGATGCAGAGGCCAGCTTTAAAGAGAAGAGCGCGTCGCTGCAGCAACAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CAA 90 bp TTGTCTGTCCATGAAATTCCTTTCTCTGTCAAAGCCAAGGGTCCTGGTGGCTCTCTGAATTTGCTGGAGTaGAGCATAGTAATTCCCTTC +
Preference number: 5 (lower is better)
Translates to: LSVHEIPFSVKAKGPGGSLNLLE*SIVIPF
Trigger: GAAGGGAATTACTATGCTCAACTCCAGCAAATTCAG...AGAGCCACCAGGACCCTTGGCTTTGACAGAGAAAGGAATTTCATGGACAGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS TCA 90 bp AATTTGCTGGAGTTGAGCATAGTAATTCCCTTCGGTCTCAGCCAATaGATTTTCGTAGGATTGTTTCATAGCCGTGATGGACTGAAGTTC +
Preference number: 5 (lower is better)
Translates to: NLLELSIVIPFGLSQ*IFVGLFHSRDGLKF
Trigger: GAACTTCAGTCCATCACGGCTATGAAACAATCCTACGAAAATTCATTGGCTGAGACCGAAGGGAATTACTATGCTCAACTCCAGCAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CAA 90 bp CTTGCATTACTTGACCAAAGGGATTCTGCAGGGGCAGCTTTTTGTTTGATGAATTCTGGCATTGTCATTTaGAAGGACAAGGTTGGCATT +
Preference number: 5 (lower is better)
Translates to: LALLDQRDSAGAAFCLMNSGIVI*KDKVGI
Trigger: AATGCCAACCTTGTCCTTCAAAATGACAATGCCAGA...ATTCATCAAACAAAAAGCTGCCCCTGCAGAATCCCTTTGGTCAAGTAATGCAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CAA 90 bp CTTGCATTACTTGACCAAAGGGATTCTGCAGGGGCAGCTTTTTGTTTGATGAATAATCTGCTCCTGAATTaGCTGGAGTTGAGCATAGTA +
Preference number: 5 (lower is better)
Translates to: LALLDQRDSAGAAFCLMNNLLLN*LELSIV
Trigger: TACTATGCTCAACTCCAGCAAATTCAGGAGCAGATT...ATTCATCAAACAAAAAGCTGCCCCTGCAGAATCCCTTTGGTCAAGTAATGCAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CAA 90 bp AAGAGCTCTATTTATGGAATGGCCAGAGGTTCACAAAATAAAATCCAAAGCTACTTCTCTAAACACGTTTaGATGCCCAGCAGCTGCTCG +
Preference number: 5 (lower is better)
Translates to: KSSIYGMARGSQNKIQSYFSKHV*MPSSCS
Trigger: CGAGCAGCTGCTGGGCATCAAAACGTGTTTAGAGAA...GTAGCTTTGGATTTTATTTTGTGAACCTCTGGCCATTCCATAAATAGAGCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CAA 90 bp TTCTTCCGAGAAAGACCAGAAACATCAGAAATACCATCAGAAATGTCTGGTGCATCTTCTGCTGAGTCATaGAATTCACTTGCAGGCTTG +
Preference number: 5 (lower is better)
Translates to: FFRERPETSEIPSEMSGASSAES*NSLAGL
Trigger: CAAGCCTGCAAGTGAATTCAATGACTCAGCAGAAGA...TGCACCAGACATTTCTGATGGTATTTCTGATGTTTCTGGTCTTTCTCGGAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CAA 90 bp TCCCGAACACCTCTCCATCGACCCTCATGCTTTAGATCTAAGTTAAAAATGGCTTGCTCCATGGTGATATaGCTGATCTTAGAGGATTTT +
Preference number: 5 (lower is better)
Translates to: SRTPLHRPSCFRSKLKMACSMVI*LILEDF
Trigger: AAAATCCTCTAAGATCAGCAATATCACCATGGAGCA...AGCCATTTTTAACTTAGATCTAAAGCATGAGGGTCGATGGAGAGGTGTTCGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS-3UTR CAA 90 bp AAGAGCTCTATTTATGGAATGGCCAGAGGTTCACAAAATAAAATCCAAAGCTACAAGAGTCCTGGCTCGTaGTTAAGGAAGCCAATGCTA +
Preference number: 5 (lower is better)
Translates to: KSSIYGMARGSQNKIQSYKSPGS*LRKPML
Trigger: TAGCATTGGCTTCCTTAACAACGAGCCAGGACTCTT...GTAGCTTTGGATTTTATTTTGTGAACCTCTGGCCATTCCATAAATAGAGCTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS GCA 72 bp AATACCGGCTGCAGTCATGGTCAAGTCTACGGCCTCTaGCGGGCCCACACTTCTCGTACCAGCCCTCGATCT +
Preference number: 6 (lower is better)
Translates to: NTGCSHGQVYGL*RAHTSRTSPRS
Trigger: AGATCGAGGGCTGGTACGAGAAGTGTGGGCCCGGCAGAGGCCGTAGACTTGACCATGACTGCAGCCGGTATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS GCA 72 bp GCTGTGGCTGCTCCTGCGTCATCTGAAATCTGTTGCTaGAGCGACGCGCTCTTCTCTTTAAAGCTGGCCTCT +
Preference number: 6 (lower is better)
Translates to: AVAAPASSEICC*SDALFSLKLAS
Trigger: AGAGGCCAGCTTTAAAGAGAAGAGCGCGTCGCTGCAGCAACAGATTTCAGATGACGCAGGAGCAGCCACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS CAA 72 bp TTGGAGGTACGTCAGCTCCTCGCTCAGAGCCTCCCGTaGTATTTCCAAGTCGGTTGTAGACAGCGTCAGCTC +
Preference number: 6 (lower is better)
Translates to: LEVRQLLAQSLP*YFQVGCRQRQL
Trigger: GAGCTGACGCTGTCTACAACCGACTTGGAAATACAACGGGAGGCTCTGAGCGAGGAGCTGACGTACCTCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS TCA 72 bp CTCGTTGTTAAGGAAGCCAATGCTACTTCCCCTACCTaGCCCCTCGCTGGCAAAGCTTCCTCCAGAAGAGAG +
Preference number: 6 (lower is better)
Translates to: LVVKEANATSPT*PLAGKASSRRE
Trigger: CTCTCTTCTGGAGGAAGCTTTGCCAGCGAGGGGTCAGGTAGGGGAAGTAGCATTGGCTTCCTTAACAACGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS CCA 72 bp CTGCATGGCCACCTTCTCGTTCCCAGAGAAGAGTCCTaGCTCGTTGTTAAGGAAGCCAATGCTACTTCCCCT +
Preference number: 6 (lower is better)
Translates to: LHGHLLVPREES*LVVKEANATSP
Trigger: AGGGGAAGTAGCATTGGCTTCCTTAACAACGAGCCAGGACTCTTCTCTGGGAACGAGAAGGTGGCCATGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS CAA 72 bp GGGGCTTTGGAAGGCACCCGCTGCTCCATGGTGATATaGCTGATCTTAGAGGATTTTTCTTCCACGGAGTGC +
Preference number: 6 (lower is better)
Translates to: GALEGTRCSMVI*LILEDFSSTEC
Trigger: GCACTCCGTGGAAGAAAAATCCTCTAAGATCAGCAATATCACCATGGAGCAGCGGGTGCCTTCCAAAGCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS CCA 72 bp CCTGATGCATTTTGCAGAACCACCATTTCCTCCTCGTaGTTCTTTTGGAGGTACGTCAGCTCCTCGCTCAGA +
Preference number: 6 (lower is better)
Translates to: PDAFCRTTISSS*FFWRYVSSSLR
Trigger: TCTGAGCGAGGAGCTGACGTACCTCCAAAAGAACCACGAGGAGGAAATGGTGGTTCTGCAAAATGCATCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS CAA 72 bp TTCTGCTCAGCCAAATCTTCATATTCGGCCCTCATGTaGTTCAACATGGCGGTTAGATCCACGCTGGGGGCT +
Preference number: 6 (lower is better)
Translates to: FCSAKSSYSALM*FNMAVRSTLGA
Trigger: AGCCCCCAGCGTGGATCTAACCGCCATGTTGAACAACATGAGGGCCGAATATGAAGATTTGGCTGAGCAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS TCA 72 bp CATAGACAGGATCTGTCGTTTCAAATCCTCAATGACTaGGAAATACCGGCTGCAGTCATGGTCAAGTCTACG +
Preference number: 6 (lower is better)
Translates to: HRQDLSFQILND*EIPAAVMVKST
Trigger: CGTAGACTTGACCATGACTGCAGCCGGTATTTCTCAGTCATTGAGGATTTGAAACGACAGATCCTGTCTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS TCA 72 bp CTCTTCAGCCACTGTTCTGGCAAATGTTTCTTCTGCTaGGTCATTGAATTCACTTGCAGGCTTGCCATCCTT +
Preference number: 6 (lower is better)
Translates to: LFSHCSGKCFFC*VIEFTCRLAIL
Trigger: AAGGATGGCAAGCCTGCAAGTGAATTCAATGACTCAGCAGAAGAAACATTTGCCAGAACAGTGGCTGAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS TCA 72 bp CCACTGTTCTGGCAAATGTTTCTTCTGCTGAGTCATTaGATTCACTTGCAGGCTTGCCATCCTTTGGTTTGT +
Preference number: 6 (lower is better)
Translates to: PLFWQMFLLLSH*IHLQACHPLVC
Trigger: ACAAACCAAAGGATGGCAAGCCTGCAAGTGAATTCAATGACTCAGCAGAAGAAACATTTGCCAGAACAGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS TCA 72 bp GAGTTGAGCATAGTAATTCCCTTCGGTCTCAGCCAATaGATTTTCGTAGGATTGTTTCATAGCCGTGATGGA +
Preference number: 6 (lower is better)
Translates to: ELSIVIPFGLSQ*IFVGLFHSRDG
Trigger: TCCATCACGGCTATGAAACAATCCTACGAAAATTCATTGGCTGAGACCGAAGGGAATTACTATGCTCAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3
CDS GCA 72 bp TGGATTCACTTCTTTGTTCCTCTCCGTCTAGTAAGTTaGAGTATGTGTCAATCTCCTTCTCTAAACACGTTT +
Preference number: 6 (lower is better)
Translates to: WIHFFVPLRLVS*SMCQSPSLNTF
Trigger: AAACGTGTTTAGAGAAGGAGATTGACACATACTGCAACTTACTAGACGGAGAGGAACAAAGAAGTGAATCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100482.3