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Pregenerated sensors for KRT17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035557

Ensembl transcript IDs: ENSMUST00000080893.7

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GGTGATGCCGGAGCGGAGAGGGAAGCTGCCTCTCTGCAGCCTCGGGGAACTGGGACAATGGTGCGCACCTaGCGGGTGGTCACAGGTTCT +
Preference number: 4 (lower is better)
Translates to: GDAGAEREAASLQPRGTGTMVRT*RVVTGS
Trigger: AGAACCTGTGACCACCCGCCAGGTGCGCACCATTGT...CCCAGTTCCCCGAGGCTGCAGAGAGGCAGCTTCCCTCTCCGCTCCGGCATCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR TCA 90 bp GATGCCGGAGCGGAGAGGGAAGCTGCCTCTCTGCAGCCTCGGGGAACTGGGCGGTCTTTTGGCTTGTACTaGGTCAGGTGGGCATCCTCT +
Preference number: 4 (lower is better)
Translates to: DAGAEREAASLQPRGTGRSFGLY*VRWASS
Trigger: AGAGGATGCCCACCTGACTCAGTACAAGCCAAAAGA...CCGCCCAGTTCCCCGAGGCTGCAGAGAGGCAGCTTCCCTCTCCGCTCCGGCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR TCA 90 bp GAGGGTGATGCCGGAGCGGAGAGGGAAGCTGCCTCTCTGCAGCCTCGGGGAACTGTTCCCGGGATGAGATaGCCTTGCCATCCTGAACTT +
Preference number: 4 (lower is better)
Translates to: EGDAGAEREAASLQPRGTVPGMR*PCHPEL
Trigger: AAGTTCAGGATGGCAAGGTCATCTCATCCCGGGAAC...AGTTCCCCGAGGCTGCAGAGAGGCAGCTTCCCTCTCCGCTCCGGCATCACCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR CCA 90 bp GTCTCAAGCATAGGAATGCTGGGGAGAGGCTGTAGCAGGAGGGTGATGCCGGAGCAAAGCTGTAGCAGCTaGAATAACTGTTGCTCCCAA +
Preference number: 4 (lower is better)
Translates to: VSSIGMLGRGCSRRVMPEQSCSS*NNCCSQ
Trigger: TTGGGAGCAACAGTTATTCCAGCTGCTACAGCTTTG...CTCCGGCATCACCCTCCTGCTACAGCCTCTCCCCAGCATTCCTATGCTTGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR TCA 90 bp TGTTCAGAACAAAGGCCACAGTTCACTTCAGGTCAGCAAGCTTTAATGGTCTCACACCTGTTCCCGGGATaGGATGACCTTGCCATCCTG +
Preference number: 4 (lower is better)
Translates to: CSEQRPQFTSGQQALMVSHLFPG*DDLAIL
Trigger: CAGGATGGCAAGGTCATCTCATCCCGGGAACAGGTG...TGAGACCATTAAAGCTTGCTGACCTGAAGTGAACTGTGGCCTTTGTTCTGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR GCA 90 bp GTGTTCAGAACAAAGGCCACAGTTCACTTCAGGTCAGCAAGCTTTAATGGTCTCTGCCTCCATAACCACTaGCAGTGCCAAAGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: VFRTKATVHFRSASFNGLCLHNH*QCQSCS
Trigger: GCTACAGCTTTGGCACTGGCAGTGGTTATGGAGGCA...GAGACCATTAAAGCTTGCTGACCTGAAGTGAACTGTGGCCTTTGTTCTGAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR GCA 90 bp TGTTCAGAACAAAGGCCACAGTTCACTTCAGGTCAGCAAGCTTTAATGGTCTCACATAACCACTGCCAGTaGCAAAGCTGTAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: CSEQRPQFTSGQQALMVSHNHCQ*QSCSSW
Trigger: CCAGCTGCTACAGCTTTGGCACTGGCAGTGGTTATG...TGAGACCATTAAAGCTTGCTGACCTGAAGTGAACTGTGGCCTTTGTTCTGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR GCA 90 bp GGTCATTTATTTCAGTGTTCAGAACAAAGGCCACAGTTCACTTCAGGTCAGCAAGCTGCCCTCCAGAGATaGTTTCATGCTGAGCTGGGA +
Preference number: 4 (lower is better)
Translates to: GHLFQCSEQRPQFTSGQQAALQR*FHAELG
Trigger: TCCCAGCTCAGCATGAAAGCATCTCTGGAGGGCAGC...TTGCTGACCTGAAGTGAACTGTGGCCTTTGTTCTGAACACTGAAATAAATGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR CCA 90 bp GTCACCATGGTCATTTATTTCAGTGTTCAGAACAAAGGCCACAGTTCACTTCAGATTTCGCCGCCCACCTaGCCTCTCAGAGCATTCATC +
Preference number: 4 (lower is better)
Translates to: VTMVIYFSVQNKGHSSLQISPPT*PLRAFI
Trigger: GATGAATGCTCTGAGAGGCCAGGTGGGCGGCGAAAT...CTGAAGTGAACTGTGGCCTTTGTTCTGAACACTGAAATAAATGACCATGGTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR CCA 90 bp GGTCATTTATTTCAGTGTTCAGAACAAAGGCCACAGTTCACTTCAGGTCAGCAATGGCATTGTCCACGGTaGCCACAAGGATCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: GHLFQCSEQRPQFTSGQQWHCPR*PQGSCS
Trigger: AGAACAAGATCCTTGTGGCCACCGTGGACAATGCCA...TTGCTGACCTGAAGTGAACTGTGGCCTTTGTTCTGAACACTGAAATAAATGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS-3UTR CAA 90 bp CAGGAGGGTGATGCCGGAGCGGAGAGGGAAGCTGCCTCTCTGCAGCCTCGGGGATTCAGCTCCTCGGTCTaGCTGAAGAACCAGTCTTCG +
Preference number: 5 (lower is better)
Translates to: QEGDAGAEREAASLQPRGFSSSV*LKNQSS
Trigger: CGAAGACTGGTTCTTCAGCAAGACCGAGGAGCTGAA...TCCCCGAGGCTGCAGAGAGGCAGCTTCCCTCTCCGCTCCGGCATCACCCTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS GCA 90 bp GCAGCCCATCGACACCCCCAAAGTTGCCTCCATAACCACTGCCAGTaGCAAAGCTGTAGCAGCTGGAATAACTGTTGCTCCCAAGAGCAC +
Preference number: 5 (lower is better)
Translates to: AAHRHPQSCLHNHCQ*QSCSSWNNCCSQEH
Trigger: GTGCTCTTGGGAGCAACAGTTATTCCAGCTGCTACAGCTTTGGCACTGGCAGTGGTTATGGAGGCAACTTTGGGGGTGTCGATGGGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS GCA 90 bp CAGCCAGCAGCCCATCGACACCCCCAAAGTTGCCTCCATAACCACTaGCAGTGCCAAAGCTGTAGCAGCTGGAATAACTGTTGCTCCCAA +
Preference number: 5 (lower is better)
Translates to: QPAAHRHPQSCLHNH*QCQSCSSWNNCCSQ
Trigger: TTGGGAGCAACAGTTATTCCAGCTGCTACAGCTTTGGCACTGGCAGTGGTTATGGAGGCAACTTTGGGGGTGTCGATGGGCTGCTGGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS GCA 72 bp CGACACCCCCAAAGTTGCCTCCATAACCACTGCCAGTaGCAAAGCTGTAGCAGCTGGAATAACTGTTGCTCC +
Preference number: 6 (lower is better)
Translates to: RHPQSCLHNHCQ*QSCSSWNNCCS
Trigger: GGAGCAACAGTTATTCCAGCTGCTACAGCTTTGGCACTGGCAGTGGTTATGGAGGCAACTTTGGGGGTGTCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS CCA 72 bp CTCCATAACCACTGCCAGTGCCAAAGCTGTAGCAGCTaGAATAACTGTTGCTCCCAAGAGCACTACCCAGGC +
Preference number: 6 (lower is better)
Translates to: LHNHCQCQSCSS*NNCCSQEHYPG
Trigger: GCCTGGGTAGTGCTCTTGGGAGCAACAGTTATTCCAGCTGCTACAGCTTTGGCACTGGCAGTGGTTATGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7
CDS CCA 72 bp CGGTGGCCACAAGGATCTTGTTCTTCAGATCCTCAATaGTATGGTAATAAGCGCTGTAGTCTCTGGCTGGCC +
Preference number: 6 (lower is better)
Translates to: RWPQGSCSSDPQ*YGNKRCSLWLA
Trigger: GGCCAGCCAGAGACTACAGCGCTTATTACCATACCATTGAGGATCTGAAGAACAAGATCCTTGTGGCCACCG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080893.7