Pregenerated sensors for KRT16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053797Ensembl transcript IDs: ENSMUST00000007280.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTaGGAGGCAGTTGTGGGTGAGGAGGCTCTAGGCAAA | + |
|
Preference number: 3 (lower is better) Translates to: AKKTGSCPKPSA*EAVVGEEALGK Trigger: TTTGCCTAGAGCCTCCTCACCCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR TCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGCATTCAGAATGCGGCTaGGGTCCACACCGGGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWHSECG*GPHRGL Trigger: CAGCCCCCGGTGTGGACCTCAGCCGCATTCTGAATG...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR CCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGAGGATGGACCGGGGCTaGCGGGAGGATGAGGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWRMDRG*REDEEK Trigger: CTTCTCCTCATCCTCCCGCCAGCCCCGGTCCATCCT...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR TCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGCCTTGCGCAGGCCATTaGTGTCACCCTCCACGGACT | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWPCAGH*CHPPRT Trigger: AGTCCGTGGAGGGTGACATCAATGGCCTGCGCAAGG...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR TCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGGGGCTGGCGGGAGGATaGGGAGAAGACTTCTCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWGLAGG*GEDFSR Trigger: TCTCGAGAAGTCTTCTCCTCATCCTCCCGCCAGCCC...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR TCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGCGTCCATCTCCACATTaGCGTCCCCACCAGTCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWRPSPH*RPHQSD Trigger: GTCAGACTGGTGGGGACGTCAATGTGGAGATGGACG...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR TCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGCAAAACTGCTGCTGCTaGAGCTCCCACCATAGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWQNCCC*SSHHSH Trigger: GTGGCTATGGTGGGAGCTTCAGCAGCAGCAGTTTTG...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR GCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGTGGTCACTTTCTCACTaGCCACCAGGAGCCCATCAC | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWWSLSH*PPGAHH Trigger: GTGATGGGCTCCTGGTGGGCAGTGAGAAAGTGACCA...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR GCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGGACTGTCCAGAGGAGTaGTGTGAGGAGGAGTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWDCPEE*CEEEWI Trigger: TATCCACTCCTCCTCACAGCACTCCTCTGGACAGTC...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR TCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGAGGATGCTTTCATGCTaGGCTGGGACTGCAGTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWRMLSC*AGTAVQ Trigger: TTGAACTGCAGTCCCAGCTCAGCATGAAAGCATCCT...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR GCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGCTGCAAAGTGAACTGTaGATTCTCCTGGGTGGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWLQSEL*ILLGGN Trigger: ATTGCCACCCAGGAGAATGCACAGTTCACTTTGCAG...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR GCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGGCTGCATACAGTATCTaGCTTTGGTCTCTTCTAGGC | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWAAYSI*LWSLLG Trigger: GCCTAGAAGAGACCAAAGGCAGATACTGTATGCAGC...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR CCA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGTACAGTATCTGCCTTTaGTCTCTTCTAGGCTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: AQRKQGPAPSPQLERQLWYSICL*SLLGCS Trigger: AGAACAGCCTAGAAGAGACCAAAGGCAGATACTGTA...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR CAA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGGCCACCTCGCTGCGGTaGCTCTGGATTAGATCACTG | + |
|
Preference number: 5 (lower is better) Translates to: AQRKQGPAPSPQLERQLWATSLR*LWIRSL Trigger: CAGTGATCTAATCCAGAGCAACCGCAGCGAGGTGGC...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR CAA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGCCTGGAACTCTGACTTaGGCTCTGGCTGAAGCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: AQRKQGPAPSPQLERQLWPGTLT*ALAEAG Trigger: ACCAGCTTCAGCCAGAGCCAAAGTCAGAGTTCCAGG...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR CAA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGAGCTCATTCTCGTACTaGGTCCTGAAGTCATCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: AQRKQGPAPSPQLERQLWSSFSY*VLKSSA Trigger: AGCTGATGACTTCAGGACCAAGTACGAGAATGAGCT...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR CAA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGGTGGCAATAATGATCTaGCTCTTCAGGTCCTCAATG | + |
|
Preference number: 5 (lower is better) Translates to: AQRKQGPAPSPQLERQLWVAIMI*LFRSSM Trigger: CATTGAGGACCTGAAGAGCAAGATCATTATTGCCAC...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS-3UTR CAA 90 bp | GCGCAAAGAAAACAGGGTCCTGCCCCAAGCCCTCAGCTTGAGAGGCAGTTGTGGATACAGTATCTGCCTTaGGTCTCTTCTAGGCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: AQRKQGPAPSPQLERQLWIQYLP*VSSRLF Trigger: GAACAGCCTAGAAGAGACCAAAGGCAGATACTGTAT...CCACAACTGCCTCTCAAGCTGAGGGCTTGGGGCAGGACCCTGTTTTCTTTGCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||
| CDS CCA 72 bp | ACCCTGCGGAGCTCAGCCACCTCGCTGCGGTTGCTCTaGATTAGATCACTGTTAGAGGCCACCTCTTTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: TLRSSATSLRLL*IRSLLEATSLF Trigger: GAACAAAGAGGTGGCCTCTAACAGTGATCTAATCCAGAGCAACCGCAGCGAGGTGGCTGAGCTCCGCAGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007280.9 |
||