Pregenerated sensors for KRT14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045545Ensembl transcript IDs: ENSMUST00000007272.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCAGAAAAAGAAGCTTTATTGCTTGCCAGGAAGGACAAGGGTCAAGTAAAGAGTTCTTCCAGCAGTATCTaGGTCCACGCAGGAGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: SEKEALLLARKDKGQVKSSSSSI*VHAGAS Trigger: GGAGGCTCCTGCGTGGACGCAGATACTGCTGGAAGA...ACTCTTTACTTGACCCTTGTCCTTCCTGGCAAGCAATAAAGCTTCTTTTTCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR CCA 90 bp | CAGGGGCTCTTCCAGCAGTATCTGCGTCCACGCAGGAGCCTCCTAAGCCTGAGCCCACCTGGCCTCTCATaGAGGCCATTTCCTCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: QGLFQQYLRPRRSLLSLSPPGLS*RPFPPR Trigger: ACGAGGAGGAAATGGCCTCCATGAGAGGCCAGGTGG...GCTCAGGCTTAGGAGGCTCCTGCGTGGACGCAGATACTGCTGGAAGAGCCCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR TCA 90 bp | GGGCTCTTCCAGCAGTATCTGCGTCCACGCAGGAGCCTCCTAAGCCTGAGCAGCGGAGAATTGGGAAGATaGAAGGTGGGCGTCCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: GLFQQYLRPRRSLLSLSSGELGR*KVGVLS Trigger: GGAGAGGACGCCCACCTTTCATCTTCCCAATTCTCC...GCTGCTCAGGCTTAGGAGGCTCCTGCGTGGACGCAGATACTGCTGGAAGAGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR CCA 90 bp | CCAGCAGTATCTGCGTCCACGCAGGAGCCTCCTAAGCCTGAGCAGCATGTAGCAGAGGATGAGGAGAATTaGGAAGATGAAAGGTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: PAVSASTQEPPKPEQHVAEDEEN*EDERWA Trigger: CGCCCACCTTTCATCTTCCCAATTCTCCTCATCCTC...TGCTACATGCTGCTCAGGCTTAGGAGGCTCCTGCGTGGACGCAGATACTGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR GCA 90 bp | CTCTTCCAGCAGTATCTGCGTCCACGCAGGAGCCTCCTAAGCCTGAGCAGCATGGTTATTCTCCAGGGATaGTTTCATGCTGAGCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LFQQYLRPRRSLLSLSSMVILQG*FHAELG Trigger: TCCCAGCTCAGCATGAAAGCATCCCTGGAGAATAAC...CATGCTGCTCAGGCTTAGGAGGCTCCTGCGTGGACGCAGATACTGCTGGAAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR CCA 90 bp | AAAGAAGCTTTATTGCTTGCCAGGAAGGACAAGGGTCAAGTAAAGAGTGAAGCCACCTTGGTGCGGATCTaGCGGTTGGTGGAGGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: KEALLLARKDKGQVKSEATLVRI*RLVEVT Trigger: TGTGACCTCCACCAACCGCCAGATCCGCACCAAGGT...GGCTTCACTCTTTACTTGACCCTTGTCCTTCCTGGCAAGCAATAAAGCTTCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR GCA 90 bp | AAAGAAGCTTTATTGCTTGCCAGGAAGGACAAGGGTCAAGTAAAGAGTGAAGCCATTGTCCACGGTGGCTaGCAGGATCTTGCTCTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: KEALLLARKDKGQVKSEAIVHGG*QDLALQ Trigger: CTGAAGAGCAAGATCCTGGCAGCCACCGTGGACAAT...GGCTTCACTCTTTACTTGACCCTTGTCCTTCCTGGCAAGCAATAAAGCTTCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR TCA 90 bp | CTCAGAAAAAGAAGCTTTATTGCTTGCCAGGAAGGACAAGGGTCAAGTAAAGAGGCTCCTCTGTCTTGCTaGAGAACCATTCCTCAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: LRKRSFIACQEGQGSSKEAPLSC*RTIPQH Trigger: ATGCTGAGGAATGGTTCTTCAGCAAGACAGAGGAGC...CTCTTTACTTGACCCTTGTCCTTCCTGGCAAGCAATAAAGCTTCTTTTTCTGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR TCA 90 bp | CAACTCAGAAAAAGAAGCTTTATTGCTTGCCAGGAAGGACAAGGGTCAAGTAAAGAGCCAGAGGAGAATTaGGAGGATGAGGAGAATTGG | + |
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Preference number: 4 (lower is better) Translates to: QLRKRSFIACQEGQGSSKEPEEN*EDEENW Trigger: CCAATTCTCCTCATCCTCTCAATTCTCCTCTGGCTC...TTTACTTGACCCTTGTCCTTCCTGGCAAGCAATAAAGCTTCTTTTTCTGAGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR CAA 90 bp | CCAGCAGTATCTGCGTCCACGCAGGAGCCTCCTAAGCCTGAGCAGCATGTAGCATGCTCCGTCTCAAACTaGGTCCGGAAGTCATCGGCA | + |
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Preference number: 5 (lower is better) Translates to: PAVSASTQEPPKPEQHVACSVSN*VRKSSA Trigger: TGCCGATGACTTCCGGACCAAGTTTGAGACGGAGCA...TGCTACATGCTGCTCAGGCTTAGGAGGCTCCTGCGTGGACGCAGATACTGCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR CAA 90 bp | TCAGAAAAAGAAGCTTTATTGCTTGCCAGGAAGGACAAGGGTCAAGTAAAGAGTGTGGCTGCCAGGATCTaGCTCTTCAGGTCCTCGATG | + |
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Preference number: 5 (lower is better) Translates to: SEKEALLLARKDKGQVKSVAARI*LFRSSM Trigger: CATCGAGGACCTGAAGAGCAAGATCCTGGCAGCCAC...ACTCTTTACTTGACCCTTGTCCTTCCTGGCAAGCAATAAAGCTTCTTTTTCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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| CDS-3UTR CAA 90 bp | TTATTGCTTGCCAGGAAGGACAAGGGTCAAGTAAAGAGTGAAGCCTATAGGGACTTCAGCTCCTCTGTCTaGCTGAAGAACCATTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: LLLARKDKGQVKSEAYRDFSSSV*LKNHSS Trigger: TGAGGAATGGTTCTTCAGCAAGACAGAGGAGCTGAA...GTCCCTATAGGCTTCACTCTTTACTTGACCCTTGTCCTTCCTGGCAAGCAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007272.8 |
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