Pregenerated sensors for KRT13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044041Ensembl transcript IDs: ENSMUST00000007275.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TGGGGTAGGGAGAAGAAAGATTCCAATCAGAAGAGATaGGGAAGGGCCCACCCTCAGGGCTTGTCAGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: WGREKKDSNQKR*GRAHPQGLSEP Trigger: TGGCTCTGACAAGCCCTGAGGGTGGGCCCTTCCCCATCTCTTCTGATTGGAATCTTTCTTCTCCCTACCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| 3UTR-3UTR CAA 90 bp | AATCATCTATTCTTTGTTGTAGAGACACTGAGAAGCCAAAGAATAGAGAGAATGGCCCACCCTCAGGGCTaGTCAGAGCCATGGGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: NHLFFVVETLRSQRIERMAHPQG*SEPWVL Trigger: CAGGACCCATGGCTCTGACAAGCCCTGAGGGTGGGC...CATTCTCTCTATTCTTTGGCTTCTCAGTGTCTCTACAACAAAGAATAGATGATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR TCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTCGGAGCTCGCTCAGCTaGGCCTCGATGCTGCTGATG | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVARSSLS*ASMLLM Trigger: CATCAGCAGCATCGAGGCTCAGCTGAGCGAGCTCCG...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR GCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTCAGGTCGGCATTGGCTaGCTCCAAGGCGCGCACCTT | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVAQVGIG*LQGAHL Trigger: AAGGTGCGCGCCTTGGAGGCAGCCAATGCCGACCTG...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | ATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGGGAAGGGCTGCTGATGAGCCCCTaGATCTGTTGCAGCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: ILQATSALLLWLLKAREGLLMSP*ICCSCR Trigger: CCTGCAGCTGCAACAGATCCAGGGGCTCATCAGCAG...CCCTTCCCTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR TCA 90 bp | TCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGTCCATAGCCTCCAGCTaGCCCTCCAGTGACAAACCG | + |
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Preference number: 4 (lower is better) Translates to: SSHPTGDISSPPVAAEGQSIASS*PSSDKP Trigger: CGGTTTGTCACTGGAGGGTCAGCTGGAGGCTATGGA...CTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | ATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGGGAAGGGCACCTCCATAGCTCATaGAGGAACTCTGGAAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: ILQATSALLLWLLKAREGHLHSS*RNSGSG Trigger: GCCGCTTCCAGAGTTCCTCCATGAGCTATGGAGGTG...CCCTTCCCTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR GCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTCACGGGTCAGATCAATaGCAGGGGTGGCGTCCATCT | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVAHGSDQ*QGWRPS Trigger: AGATGGACGCCACCCCTGGCATTGATCTGACCCGTG...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTCGGCCTCCTCCAAGCTaGCAAGAACCAGCTCCGAAA | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVARPPPS*QEPAPK Trigger: TTTCGGAGCTGGTTCTTGCCAGCTTGGAGGAGGCCG...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTTCGGCCTCCACGCTCTaGCGCAAGGTCAGCTCATTT | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVASASTL*RKVSSF Trigger: AAATGAGCTGACCTTGCGCCAGAGCGTGGAGGCCGA...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR TCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTCGTCCATCTCCACATTaGCCTGGCCTACTACCTGGT | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVARPSPH*PGLLPG Trigger: ACCAGGTAGTAGGCCAGGTCAATGTGGAGATGGACG...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR GCA 90 bp | AAAGATTCCAATCAGAAGAGATGGGGAAGGGCCCACCCTCAGGGCTTGTCAGAGCAAAGCCACAGCTCATaGCCCCTCCATAGCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KDSNQKRWGRAHPQGLSEQSHSS*PLHSLQ Trigger: CTGGAGGCTATGGAGGGGGCATGAGCTGTGGCTTTG...CTCTGACAAGCCCTGAGGGTGGGCCCTTCCCCATCTCTTCTGATTGGAATCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | ATCACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCCGCTCTGGACTAGCTaGGCTCTGTTTCAGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: ITSCSPLILQATSALLLWPLWTS*ALFQMP Trigger: TGGCATCTGAAACAGAGCCCAGCTAGTCCAGAGCGG...CCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTACTGTAGTCCCGCTCTaGACTAGCTGGGCTCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVATVVPL*TSWALF Trigger: AAACAGAGCCCAGCTAGTCCAGAGCGGGACTACAGT...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | ACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGGGAAGGGACGCCGGATCATTTCAGCGTTaGAGGATACTTCCTTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: TGDISSPPVAAEGQGRDAGSFQR*RILPCS Trigger: TGAACAAGGAAGTATCCTCCAACGCTGAAATGATCC...GGCGTCCCTTCCCTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | CACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTTCAGCTCTGCACTCTTaGTCTGGAACCATTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: HILQSSHPTGDISSPPVASALHS*SGTIPQ Trigger: CTGAGGAATGGTTCCAGACCAAGAGTGCAGAGCTGA...AGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR TCA 90 bp | AAAGATTCCAATCAGAAGAGATGGGGAAGGGCCCACCCTCAGGGCTTGTCAGAGAGTGACAAACCGAGATaGGCAGGAGGAGATATTACG | + |
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Preference number: 4 (lower is better) Translates to: KDSNQKRWGRAHPQGLSESDKPR*AGGDIT Trigger: CGTAATATCTCCTCCTGCTCATCTCGGTTTGTCACT...CTCTGACAAGCCCTGAGGGTGGGCCCTTCCCCATCTCTTCTGATTGGAATCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR TCA 90 bp | ATCACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTACTACCTGGTTGCTaGATTCCTTCATCTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: ITSCSPLILQATSALLLWLLPGC*IPSSPL Trigger: AAGAGGAGATGAAGGAATTCAGCAACCAGGTAGTAG...CCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTGAT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | AAAGATTCCAATCAGAAGAGATGGGGAAGGGCCCACCCTCAGGGCTTGTCAGAGTCCGGAGCTCCTCGATaGTCTTATAATAAGCACTGT | + |
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Preference number: 4 (lower is better) Translates to: KDSNQKRWGRAHPQGLSESGAPR*SYNKHC Trigger: ACAGTGCTTATTATAAGACCATCGAGGAGCTCCGGA...CTCTGACAAGCCCTGAGGGTGGGCCCTTCCCCATCTCTTCTGATTGGAATCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR TCA 90 bp | AATCATCTATTCTTTGTTGTAGAGACACTGAGAAGCCAAAGAATAGAGAGAATGTGTCAATCTCCAGGATaGTCCGGTTGTTGTCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: NHLFFVVETLRSQRIERMCQSPG*SGCCPW Trigger: CCACGGACAACAACCGGATCATCCTGGAGATTGACA...CATTCTCTCTATTCTTTGGCTTCTCAGTGTCTCTACAACAAAGAATAGATGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CCA 90 bp | AATCATCTATTCTTTGTTGTAGAGACACTGAGAAGCCAAAGAATAGAGAGAATGACCTGGCCTACTACCTaGTTGCTGAATTCCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: NHLFFVVETLRSQRIERMTWPTT*LLNSFI Trigger: GATGAAGGAATTCAGCAACCAGGTAGTAGGCCAGGT...CATTCTCTCTATTCTTTGGCTTCTCAGTGTCTCTACAACAAAGAATAGATGATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CAA 90 bp | ATCACATCCTGCAGTCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGTCTGGGCGACCGGAATaGGAGGAGGGGGACCCGTTG | + |
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Preference number: 5 (lower is better) Translates to: ITSCSPLILQATSALLLWSGRPE*EEGDPL Trigger: CAACGGGTCCCCCTCCTCCAATTCCGGTCGCCCAGA...CCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGACTGCAGGATGTGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS TCA 90 bp | AGCCACAGCTCATGCCCCCTCCATAGCCTCCAGCTGACCCTCCAGTaGCAAACCGAGATGAGCAGGAGGAGATATTACGGCCTCCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: SHSSCPLHSLQLTLQ*QTEMSRRRYYGLLQ Trigger: TTGGAGGAGGCCGTAATATCTCCTCCTGCTCATCTCGGTTTGTCACTGGAGGGTCAGCTGGAGGCTATGGAGGGGGCATGAGCTGTGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CAA 90 bp | ATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGGGAAGGGTGGCCTACTACCTGGTaGCTGAATTCCTTCATCTCC | + |
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Preference number: 5 (lower is better) Translates to: ILQATSALLLWLLKAREGWPTTW*LNSFIS Trigger: GGAGATGAAGGAATTCAGCAACCAGGTAGTAGGCCA...CCCTTCCCTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CAA 90 bp | ACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGGGAAGGGACGCCTGTTCCAGCCTTGTTTaGATGTCCAACAGCATCTTG | + |
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Preference number: 5 (lower is better) Translates to: TGDISSPPVAAEGQGRDACSSLV*MSNSIL Trigger: CAAGATGCTGTTGGACATCAAAACAAGGCTGGAACA...GGCGTCCCTTCCCTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CAA 90 bp | TCCTCTCATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGTTCAGCTCTGCACTCTaGGTCTGGAACCATTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SSHPTGDISSPPVAAEGQFSSAL*VWNHSS Trigger: TGAGGAATGGTTCCAGACCAAGAGTGCAGAGCTGAA...CTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGATGAGAGGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS-3UTR CAA 90 bp | ATCCTACAGGCGACATCAGCTCTCCTCCTGTGGCTGCTGAAGGCCAGGGAAGGGTTGGAGGATACTTCCTaGTTCAGCTCTGCACTCTTG | + |
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Preference number: 5 (lower is better) Translates to: ILQATSALLLWLLKAREGLEDTS*FSSALL Trigger: CAAGAGTGCAGAGCTGAACAAGGAAGTATCCTCCAA...CCCTTCCCTGGCCTTCAGCAGCCACAGGAGGAGAGCTGATGTCGCCTGTAGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS TCA 72 bp | TCATGCCCCCTCCATAGCCTCCAGCTGACCCTCCAGTaGCAAACCGAGATGAGCAGGAGGAGATATTACGGC | + |
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Preference number: 6 (lower is better) Translates to: SCPLHSLQLTLQ*QTEMSRRRYYG Trigger: GCCGTAATATCTCCTCCTGCTCATCTCGGTTTGTCACTGGAGGGTCAGCTGGAGGCTATGGAGGGGGCATGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS CAA 90 bp | TACTTTCGGAAATCTGGGCGACCGGAATTGGAGGAGGGGGACCCGTaGGAGGTAGTAGTGTTATTTCCTCCGGAGTTGAAGCCGGTCATC | + |
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Preference number: 6 (lower is better) Translates to: YFRKSGRPELEEGDP*EVVVLFPPELKPVI Trigger: GATGACCGGCTTCAACTCCGGAGGAAATAACACTACTACCTCCAACGGGTCCCCCTCCTCCAATTCCGGTCGCCCAGATTTCCGAAAGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS CAA 72 bp | AAATCTGGGCGACCGGAATTGGAGGAGGGGGACCCGTaGGAGGTAGTAGTGTTATTTCCTCCGGAGTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: KSGRPELEEGDP*EVVVLFPPELK Trigger: CTTCAACTCCGGAGGAAATAACACTACTACCTCCAACGGGTCCCCCTCCTCCAATTCCGGTCGCCCAGATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS CCA 72 bp | CTCGATGGTCTTATAATAAGCACTGTAGTCCCGCTCTaGACTAGCTGGGCTCTGTTTCAGATGCCAGTCACG | + |
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Preference number: 6 (lower is better) Translates to: LDGLIISTVVPL*TSWALFQMPVT Trigger: CGTGACTGGCATCTGAAACAGAGCCCAGCTAGTCCAGAGCGGGACTACAGTGCTTATTATAAGACCATCGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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| CDS CCA 72 bp | CTTATAATAAGCACTGTAGTCCCGCTCTGGACTAGCTaGGCTCTGTTTCAGATGCCAGTCACGAATCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: LIISTVVPLWTS*ALFQMPVTNLH Trigger: GTGAAGATTCGTGACTGGCATCTGAAACAGAGCCCAGCTAGTCCAGAGCGGGACTACAGTGCTTATTATAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007275.3 |
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