Pregenerated sensors for KRT12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020912Ensembl transcript IDs: ENSMUST00000017741.4
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAAACTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTaGTCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACTTGT | + |
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Preference number: 1 (lower is better) Translates to: KNLVERLLQAQEGVR*SGVAMKTSRATETC Trigger: ACAAGTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTTTCCACTAAGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR TCA 90 bp | CTGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACAGGTGCTaGATTCATATAGCGCACGGAAGCAGTAACTCCTGGCTGGAAACT | + |
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Preference number: 1 (lower is better) Translates to: LHRESKEKETGQNRC*IHIAHGSSNSWLET Trigger: AGTTTCCAGCCAGGAGTTACTGCTTCCGTGCGCTATATGAATTCAGCACCTGTTTTGGCCAGTTTCCTTTTCCTTGGATTCTCTATGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR-3UTR CCA 90 bp | GGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACGCAGTAACTCCTGGCTaGAAACTTCGCATCCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: GRCKVIWGCNEDQQSHRDAVTPG*KLRIPE Trigger: CTCTGGGATGCGAAGTTTCCAGCCAGGAGTTACTGC...GTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR-3UTR TCA 90 bp | CGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAACTCAGGAAGGTGTAAGGTaGTCTGGGGTTGCAATGAAG | + |
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Preference number: 2 (lower is better) Translates to: RFRQSCGIKQMVQATRKTQEGVR*SGVAMK Trigger: CTTCATTGCAACCCCAGATCACCTTACACCTTCCTG...AGTTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR-3UTR CCA 90 bp | TTAAACCCATACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGAAGGTGTAAGGTGATCTaGGGTTGCAATGAAGACCAG | + |
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Preference number: 2 (lower is better) Translates to: LNPYGSVKAVGLNKWSRRRCKVI*GCNEDQ Trigger: CTGGTCTTCATTGCAACCCCAGATCACCTTACACCT...TCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTATGGGTTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR CAA 90 bp | TCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACTTGTAAATaGGATATTGTTTCAGAAATGCTAACAAGACCCAACCTGCATAGA | + |
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Preference number: 2 (lower is better) Translates to: SGVAMKTSRATETCK*DIVSEMLTRPNLHR Trigger: TCTATGCAGGTTGGGTCTTGTTAGCATTTCTGAAACAATATCCAATTTACAAGTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR-3UTR CCA 90 bp | ATGAAGACCAGCAGAGCCACAGAGACTTGTAAATTGGATATTGTTTCAGAAATGCAAGGAAAAGGAAACTaGCCAAAACAGGTGCTGAAT | + |
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Preference number: 2 (lower is better) Translates to: MKTSRATETCKLDIVSEMQGKGN*PKQVLN Trigger: ATTCAGCACCTGTTTTGGCCAGTTTCCTTTTCCTTG...CATTTCTGAAACAATATCCAATTTACAAGTCTCTGTGGCTCTGCTGGTCTTCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR CCA 72 bp | AAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTaGGGTTGCAATGAAGACCAGCAGAGCCACAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: KTSSGPGRCKVI*GCNEDQQSHRD Trigger: GTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| 3UTR TCA 72 bp | GAATCCAAGGAAAAGGAAACTGGCCAAAACAGGTGCTaGATTCATATAGCGCACGGAAGCAGTAACTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: ESKEKETGQNRC*IHIAHGSSNSW Trigger: CCAGGAGTTACTGCTTCCGTGCGCTATATGAATTCAGCACCTGTTTTGGCCAGTTTCCTTTTCCTTGGATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | GGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACTCTCCAGGCGAGCCTTaGCGCCCAGCAGCCGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GRCKVIWGCNEDQQSHRDSPGEP*RPAAAG Trigger: ACCAGCGGCTGCTGGGCGTCAAGGCTCGCCTGGAGA...GTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGACGCCCAGCAGCCGCTaGTGGTCCGCATTCTGGCGC | + |
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Preference number: 4 (lower is better) Translates to: SSGPGRCKVIWGCNEDQQTPSSR*WSAFWR Trigger: GCGCCAGAATGCGGACCACCAGCGGCTGCTGGGCGT...CTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | GGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACTCGCTCTTGCTGGACTaGAGCTGCTCCGTGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GRCKVIWGCNEDQQSHRDSLLLD*SCSVLL Trigger: CAGCAACACGGAGCAGCTTCAGTCCAGCAAGAGCGA...GTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGATCTGCAGGAGGAGCTaGGCGTTGCTGACTCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: SSGPGRCKVIWGCNEDQQICRRS*ALLTLA Trigger: TGCCAGAGTCAGCAACGCCCAGCTCCTCCTGCAGAT...CTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | TCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGTCTCATACTTCATCCTaGAGTCCTCGGCAGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SSGPGRCKVIWGCNEDQQSHTSS*SPRQPA Trigger: GGCTGGCTGCCGAGGACTTCAGGATGAAGTATGAGA...CTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR GCA 90 bp | CGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAACTGTTGCTCCTCCAGGCTaGCGATCAGCTGCTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: RFRQSCGIKQMVQATRKTVAPPG*RSAAAP Trigger: AGGTGCAGCAGCTGATCGGCAGCCTGGAGGAGCAAC...AGTTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | GGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACCCTGCCTGGAAACTTTaGAGTTCCTCTTCGTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: GRCKVIWGCNEDQQSHRDPAWKL*SSSSWF Trigger: GAACCACGAAGAGGAACTCCAAAGTTTCCAGGCAGG...GTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGGACTTCATGGCGAGCTaGGACTGGAGTTCAATCTCT | + |
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Preference number: 4 (lower is better) Translates to: SSGPGRCKVIWGCNEDQQDFMAS*DWSSIS Trigger: AGAGATTGAACTCCAGTCCCAGCTCGCCATGAAGTC...CTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAATCAGCCCGCACCTGTTaGAGTTGCTCCTCCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: YGSVKAVGLNKWSRRPEKSARTC*SCSSRL Trigger: CAGCCTGGAGGAGCAACTCCAACAGGTGCGGGCTGA...TTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | CTAACAAGACCCAACCTGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACTGCGCTTCAGGTCGGTaGCCTCGCTCTTGCTGGACT | + |
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Preference number: 4 (lower is better) Translates to: LTRPNLHRESKEKETGQNCASGR*PRSCWT Trigger: AGTCCAGCAAGAGCGAGGTCACCGACCTGAAGCGCA...GTTTTGGCCAGTTTCCTTTTCCTTGGATTCTCTATGCAGGTTGGGTCTTGTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | GGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGAGCCACAGAGACTCTTCTTCAAGTTCCTaGACCTGGGATGAGACCACT | + |
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Preference number: 4 (lower is better) Translates to: GRCKVIWGCNEDQQSHRDSSSSS*TWDETT Trigger: AGTGGTCTCATCCCAGGTTCAGGAACTTGAAGAAGA...GTCTCTGTGGCTCTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR GCA 90 bp | CTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCTCGACTGATGGTGTCTaGGGTTTGGAGACAGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: LSGKTSSGPGRCKVIWGCSTDGV*GLETER Trigger: CCTTTCTGTCTCCAAACCGCAGACACCATCAGTCGA...GCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTTTCCACTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAAGTGAGGGTCTCAAGCTaGGCTTCCAGGTCGGCTCTA | + |
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Preference number: 4 (lower is better) Translates to: YGSVKAVGLNKWSRRPEKVRVSS*ASRSAL Trigger: TAGAGCCGACCTGGAAGCCCAGCTTGAGACCCTCAC...TTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | CTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCATGGTGTCTGCGGTTTaGAGACAGAAAGGGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: LSGKTSSGPGRCKVIWGCMVSAV*RQKGMS Trigger: GCTCATCCCTTTCTGTCTCCAAACCGCAGACACCAT...GCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTTTCCACTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR GCA 90 bp | TTAAACCCATACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACTTGCGTTGTCAATCTaGAGGAGGAGCTGGGCGTTG | + |
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Preference number: 4 (lower is better) Translates to: LNPYGSVKAVGLNKWSRRLALSI*RRSWAL Trigger: CAACGCCCAGCTCCTCCTGCAGATTGACAACGCAAG...TCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTATGGGTTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | TACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAACGTCCATTTCTACATTaGCCTCACCTGGACCACCTG | + |
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Preference number: 4 (lower is better) Translates to: YGSVKAVGLNKWSRRPEKRPFLH*PHLDHL Trigger: CAGGTGGTCCAGGTGAGGTCAATGTAGAAATGGACG...TTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | CTAACAAGACCCAACCTGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACATCAGCTGCTGCACCTaGGACAGTTGGCAGCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: LTRPNLHRESKEKETGQNISCCT*DSWQQY Trigger: GTACTGCTGCCAACTGTCTCAGGTGCAGCAGCTGAT...GTTTTGGCCAGTTTCCTTTTCCTTGGATTCTCTATGCAGGTTGGGTCTTGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TTAAACCCATACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGAGAGACCCAGCGTCTCTaGTTCTCCGTGTTTCATACC | + |
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Preference number: 4 (lower is better) Translates to: LNPYGSVKAVGLNKWSRRETQRL*FSVFHT Trigger: GGTATGAAACACGGAGAACCAGAGACGCTGGGTCTC...TCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTATGGGTTTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR GCA 90 bp | CTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCGAAGACCTCCATCATTaGCAGAAAAGATACACAGAG | + |
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Preference number: 4 (lower is better) Translates to: LSGKTSSGPGRCKVIWGCEDLHH*QKRYTE Trigger: CTCTGTGTATCTTTTCTGGCAATGATGGAGGTCTTC...GCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTTTCCACTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAATACATTGACCTCACCTaGACCACCTGCCTGGAAACT | + |
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Preference number: 4 (lower is better) Translates to: YGSVKAVGLNKWSRRPEKYIDLT*TTCLET Trigger: AGTTTCCAGGCAGGTGGTCCAGGTGAGGTCAATGTA...TTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | ATGAAGACCAGCAGAGCCACAGAGACTTGTAAATTGGATATTGTTTCAGAAATGAAGCCAGCTCCTCAGTaGGGGTCTCAAGCTGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: MKTSRATETCKLDIVSEMKPAPQ*GSQAGL Trigger: AAGCCCAGCTTGAGACCCTCACTGAGGAGCTGGCTT...CATTTCTGAAACAATATCCAATTTACAAGTCTCTGTGGCTCTGCTGGTCTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR GCA 90 bp | CGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAACTGCATCTTTCCGATTTTaGTCAGCCATGGCTTCATAC | + |
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Preference number: 4 (lower is better) Translates to: RFRQSCGIKQMVQATRKTASFRF*SAMASY Trigger: GTATGAAGCCATGGCTGAGCAAAATCGGAAAGATGC...AGTTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR GCA 90 bp | CTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCCCATTCACTATCTCCTaGACGACTGTCTTGATTTTT | + |
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Preference number: 4 (lower is better) Translates to: LSGKTSSGPGRCKVIWGCPFTIS*TTVLIF Trigger: AAAAATCAAGACAGTCGTGCAGGAGATAGTGAATGG...GCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTTTCCACTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR TCA 90 bp | TGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACAGGTGCTGAATTCATAGGAGACAGAAAGGGATaGGCTCTCGTCAAAACCGTC | + |
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Preference number: 4 (lower is better) Translates to: CIENPRKRKLAKTGAEFIGDRKG*ALVKTV Trigger: GACGGTTTTGACGAGAGCTCATCCCTTTCTGTCTCC...TATGAATTCAGCACCTGTTTTGGCCAGTTTCCTTTTCCTTGGATTCTCTATGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | TGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACAGGTGCTGAATTCATACCTGGACCACCTGCCTaGAAACTTTGGAGTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: CIENPRKRKLAKTGAEFIPGPPA*KLWSSS Trigger: AGAGGAACTCCAAAGTTTCCAGGCAGGTGGTCCAGG...TATGAATTCAGCACCTGTTTTGGCCAGTTTCCTTTTCCTTGGATTCTCTATGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR GCA 90 bp | ATGAAGACCAGCAGAGCCACAGAGACTTGTAAATTGGATATTGTTTCAGAAATGAACACTAGAAGCAGATaGACCCCAAGGTCTGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: MKTSRATETCKLDIVSEMNTRSR*TPRSAC Trigger: GCAGGCAGACCTTGGGGTGCATCTGCTTCTAGTGTT...CATTTCTGAAACAATATCCAATTTACAAGTCTCTGTGGCTCTGCTGGTCTTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | CGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAACTCAAGTCTTCAATCAGTaGGTAGTATTTACTGTAATC | + |
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Preference number: 4 (lower is better) Translates to: RFRQSCGIKQMVQATRKTQVFNQ*VVFTVI Trigger: GATTACAGTAAATACTACCCACTGATTGAAGACTTG...AGTTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CCA 90 bp | CTAACAAGACCCAACCTGCATAGAGAATCCAAGGAAAAGGAAACTGGCCAAAACCATTTAGATTTTGCATaGTTTCTTTCTCAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: LTRPNLHRESKEKETGQNHLDFA*FLSQNQ Trigger: CTGGTTCTGAGAAAGAAACCATGCAAAATCTAAATG...GTTTTGGCCAGTTTCCTTTTCCTTGGATTCTCTATGCAGGTTGGGTCTTGTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CCA 90 bp | TCCAGGCGAGCCTTGACGCCCAGCAGCCGCTGGTGGTCCGCATTCTaGCGCTCCGCGTCAGCCCGCACCTGTTGGAGTTGCTCCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SRRALTPSSRWWSAF*RSASARTCWSCSSR Trigger: CCTGGAGGAGCAACTCCAACAGGTGCGGGCTGACGCGGAGCGCCAGAATGCGGACCACCAGCGGCTGCTGGGCGTCAAGGCTCGCCTGGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CCA 90 bp | GTCTCAATCTCCATCTCCAGGCGAGCCTTGACGCCCAGCAGCCGCTaGTGGTCCGCATTCTGGCGCTCCGCGTCAGCCCGCACCTGTTGG | + |
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Preference number: 5 (lower is better) Translates to: VSISISRRALTPSSR*WSAFWRSASARTCW Trigger: CCAACAGGTGCGGGCTGACGCGGAGCGCCAGAATGCGGACCACCAGCGGCTGCTGGGCGTCAAGGCTCGCCTGGAGATGGAGATTGAGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 90 bp | GGCGCTCCGCGTCAGCCCGCACCTGTTGGAGTTGCTCCTCCAGGCTaGCGATCAGCTGCTGCACCTGAGACAGTTGGCAGCAGTACCCAC | + |
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Preference number: 5 (lower is better) Translates to: GAPRQPAPVGVAPPG*RSAAAPETVGSSTH Trigger: GTGGGTACTGCTGCCAACTGTCTCAGGTGCAGCAGCTGATCGGCAGCCTGGAGGAGCAACTCCAACAGGTGCGGGCTGACGCGGAGCGCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 90 bp | TCTCAGAGGTCCCCCATAGGCAGAGCCAAGCCCCGGCAAGCAACCTaGAGAGCCACCGCTAAAGCCAGAACTAGAACCAAACATGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: SQRSPIGRAKPRQAT*RATAKARTRTKHGS Trigger: GCTTCCATGTTTGGTTCTAGTTCTGGCTTTAGCGGTGGCTCTGCAGGTTGCTTGCCGGGGCTTGGCTCTGCCTATGGGGGACCTCTGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CAA 90 bp | TCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAATGAAGACCAGCAGCTGCACCTGAGACAGTaGGCAGCAGTACCCACCCTC | + |
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Preference number: 5 (lower is better) Translates to: SSGPGRCKVIWGCNEDQQLHLRQ*AAVPTL Trigger: GAGGGTGGGTACTGCTGCCAACTGTCTCAGGTGCAG...CTGCTGGTCTTCATTGCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CAA 90 bp | TACGGTTCCGTCAAAGCTGTGGGATTAAACAAATGGTCCAGGCGACCAGAAAAAATCTCCAGGCGAGCCTaGACGCCCAGCAGCCGCTGG | + |
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Preference number: 5 (lower is better) Translates to: YGSVKAVGLNKWSRRPEKISRRA*TPSSRW Trigger: CCAGCGGCTGCTGGGCGTCAAGGCTCGCCTGGAGAT...TTTTTCTGGTCGCCTGGACCATTTGTTTAATCCCACAGCTTTGACGGAACCGTA 56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CAA 90 bp | CTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCTGGGCTCTCATTTCATaGAGGACCTTGGTGAGATCC | + |
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Preference number: 5 (lower is better) Translates to: LSGKTSSGPGRCKVIWGCWALIS*RTLVRS Trigger: GGATCTCACCAAGGTCCTCAATGAAATGAGAGCCCA...GCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTTTCCACTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CAA 90 bp | ATCCAAGGAAAAGGAAACTGGCCAAAACAGGTGCTGAATTCATATAGCGCACGGGCGTCCATTTCTACATaGACCTCACCTGGACCACCT | + |
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Preference number: 5 (lower is better) Translates to: IQGKGNWPKQVLNSYSARASIST*TSPGPP Trigger: AGGTGGTCCAGGTGAGGTCAATGTAGAAATGGACGC...CCGTGCGCTATATGAATTCAGCACCTGTTTTGGCCAGTTTCCTTTTCCTTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CAA 90 bp | ATGAAGACCAGCAGAGCCACAGAGACTTGTAAATTGGATATTGTTTCAGAAATGCCGCACCTGTTGGAGTaGCTCCTCCAGGCTGCCGAT | + |
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Preference number: 5 (lower is better) Translates to: MKTSRATETCKLDIVSEMPHLLE*LLQAAD Trigger: ATCGGCAGCCTGGAGGAGCAACTCCAACAGGTGCGG...CATTTCTGAAACAATATCCAATTTACAAGTCTCTGTGGCTCTGCTGGTCTTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 90 bp | TTTGCATGGTTTCTTTCTCAGAACCAGAAAGAAGACCTCCATCATTaGCAGAAAAGATACACAGAGAGCCACCGCCCGAGCTTCCAGCTA | + |
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Preference number: 5 (lower is better) Translates to: FAWFLSQNQKEDLHH*QKRYTESHRPSFQL Trigger: TAGCTGGAAGCTCGGGCGGTGGCTCTCTGTGTATCTTTTCTGGCAATGATGGAGGTCTTCTTTCTGGTTCTGAGAAAGAAACCATGCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CAA 90 bp | CTTAGTGGAAAGACTTCTTCAGGCCCAGGAAGGTGTAAGGTGATCTGGGGTTGCAGAAGACCTCCATCATaGCCAGAAAAGATACACAGA | + |
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Preference number: 5 (lower is better) Translates to: LSGKTSSGPGRCKVIWGCRRPPS*PEKIHR Trigger: TCTGTGTATCTTTTCTGGCAATGATGGAGGTCTTCT...GCAACCCCAGATCACCTTACACCTTCCTGGGCCTGAAGAAGTCTTTCCACTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 90 bp | TTTCGAGTTTTATTTGGGTCTTTAGAGGAATCGACTGATGGTGTCTaGGGTTTGGAGACAGAAAGGGATGAGCTCTCGTCAAAACCGTCG | + |
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Preference number: 5 (lower is better) Translates to: FRVLFGSLEESTDGV*GLETERDELSSKPS Trigger: CGACGGTTTTGACGAGAGCTCATCCCTTTCTGTCTCCAAACCGCAGACACCATCAGTCGATTCCTCTAAAGACCCAAATAAAACTCGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CCA 90 bp | GCTGACTCTGGCAGAAACGATCTTATTCTTCAAGTCTTCAATCAGTaGGTAGTATTTACTGTAATCACTCTGAGACCCAGCGTCTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: ADSGRNDLILQVFNQ*VVFTVITLRPSVSG Trigger: ACCAGAGACGCTGGGTCTCAGAGTGATTACAGTAAATACTACCCACTGATTGAAGACTTGAAGAATAAGATCGTTTCTGCCAGAGTCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS-3UTR CAA 90 bp | ATGAAGACCAGCAGAGCCACAGAGACTTGTAAATTGGATATTGTTTCAGAAATGGATGGTGTCTGCGGTTaGGAGACAGAAAGGGATGAG | + |
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Preference number: 5 (lower is better) Translates to: MKTSRATETCKLDIVSEMDGVCG*ETERDE Trigger: CTCATCCCTTTCTGTCTCCAAACCGCAGACACCATC...CATTTCTGAAACAATATCCAATTTACAAGTCTCTGTGGCTCTGCTGGTCTTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CCA 72 bp | TCCATCTCCAGGCGAGCCTTGACGCCCAGCAGCCGCTaGTGGTCCGCATTCTGGCGCTCCGCGTCAGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: SISRRALTPSSR*WSAFWRSASAR Trigger: GCGGGCTGACGCGGAGCGCCAGAATGCGGACCACCAGCGGCTGCTGGGCGTCAAGGCTCGCCTGGAGATGGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CCA 72 bp | GCCTTGACGCCCAGCAGCCGCTGGTGGTCCGCATTCTaGCGCTCCGCGTCAGCCCGCACCTGTTGGAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: ALTPSSRWWSAF*RSASARTCWSC Trigger: GCAACTCCAACAGGTGCGGGCTGACGCGGAGCGCCAGAATGCGGACCACCAGCGGCTGCTGGGCGTCAAGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CAA 72 bp | GTCCGCATTCTGGCGCTCCGCGTCAGCCCGCACCTGTaGGAGTTGCTCCTCCAGGCTGCCGATCAGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: VRILALRVSPHL*ELLLQAADQLL Trigger: CAGCAGCTGATCGGCAGCCTGGAGGAGCAACTCCAACAGGTGCGGGCTGACGCGGAGCGCCAGAATGCGGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 72 bp | CGTCAGCCCGCACCTGTTGGAGTTGCTCCTCCAGGCTaGCGATCAGCTGCTGCACCTGAGACAGTTGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RQPAPVGVAPPG*RSAAAPETVGS Trigger: GCTGCCAACTGTCTCAGGTGCAGCAGCTGATCGGCAGCCTGGAGGAGCAACTCCAACAGGTGCGGGCTGACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS TCA 72 bp | AGATGCACCCCAAGGTCTGCCTGCCGCCCCATTCTGTaGGGAAGACCTCCTGGACAGCGCAGAGGTGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RCTPRSACRPIL*GRPPGQRRGAD Trigger: GTCTGCACCTCTGCGCTGTCCAGGAGGTCTTCCTCACAGAATGGGGCGGCAGGCAGACCTTGGGGTGCATCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 72 bp | TCCCCCATAGGCAGAGCCAAGCCCCGGCAAGCAACCTaGAGAGCCACCGCTAAAGCCAGAACTAGAACCAAA | + |
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Preference number: 6 (lower is better) Translates to: SPIGRAKPRQAT*RATAKARTRTK Trigger: TTTGGTTCTAGTTCTGGCTTTAGCGGTGGCTCTGCAGGTTGCTTGCCGGGGCTTGGCTCTGCCTATGGGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 72 bp | CGCGTCCATTTCTACATTGACCTCACCTGGACCACCTaGCTGGAAACTTTGGAGTTCCTCTTCGTGGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RVHFYIDLTWTT*LETLEFLFVVL Trigger: AAGAACCACGAAGAGGAACTCCAAAGTTTCCAGGCAGGTGGTCCAGGTGAGGTCAATGTAGAAATGGACGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CAA 72 bp | GGGTCTTTAGAGGAATCGACTGATGGTGTCTGCGGTTaGGAGACAGAAAGGGATGAGCTCTCGTCAAAACCG | + |
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Preference number: 6 (lower is better) Translates to: GSLEESTDGVCG*ETERDELSSKP Trigger: CGGTTTTGACGAGAGCTCATCCCTTTCTGTCTCCAAACCGCAGACACCATCAGTCGATTCCTCTAAAGACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 72 bp | TCGGAGCTCTCTGCTCTTTTCAAGAAACCAGGCCTCTaGATCTTTCCGATTTTGCTCAGCCATGGCTTCATA | + |
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Preference number: 6 (lower is better) Translates to: SELSALFKKPGL*IFPILLSHGFI Trigger: TATGAAGCCATGGCTGAGCAAAATCGGAAAGATGCAGAGGCCTGGTTTCTTGAAAAGAGCAGAGAGCTCCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CAA 72 bp | GTTTCTTTCTCAGAACCAGAAAGAAGACCTCCATCATaGCCAGAAAAGATACACAGAGAGCCACCGCCCGAG | + |
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Preference number: 6 (lower is better) Translates to: VSFSEPERRPPS*PEKIHREPPPE Trigger: CTCGGGCGGTGGCTCTCTGTGTATCTTTTCTGGCAATGATGGAGGTCTTCTTTCTGGTTCTGAGAAAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CAA 90 bp | TTTTGCATGGTTTCTTTCTCAGAACCAGAAAGAAGACCTCCATCATaGCCAGAAAAGATACACAGAGAGCCACCGCCCGAGCTTCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: FCMVSFSEPERRPPS*PEKIHREPPPELPA Trigger: AGCTGGAAGCTCGGGCGGTGGCTCTCTGTGTATCTTTTCTGGCAATGATGGAGGTCTTCTTTCTGGTTCTGAGAAAGAAACCATGCAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS GCA 72 bp | TTATTTGGGTCTTTAGAGGAATCGACTGATGGTGTCTaGGGTTTGGAGACAGAAAGGGATGAGCTCTCGTCA | + |
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Preference number: 6 (lower is better) Translates to: LFGSLEESTDGV*GLETERDELSS Trigger: TGACGAGAGCTCATCCCTTTCTGTCTCCAAACCGCAGACACCATCAGTCGATTCCTCTAAAGACCCAAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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| CDS CCA 72 bp | AGTATTTACTGTAATCACTCTGAGACCCAGCGTCTCTaGTTCTCCGTGTTTCATACCACTCTCGAATTTTGT | + |
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Preference number: 6 (lower is better) Translates to: SIYCNHSETQRL*FSVFHTTLEFC Trigger: ACAAAATTCGAGAGTGGTATGAAACACGGAGAACCAGAGACGCTGGGTCTCAGAGTGATTACAGTAAATACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017741.4 |
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