Pregenerated sensors for KRAS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030265Ensembl transcript IDs: ENSMUST00000032399.12, ENSMUST00000111710.8, ENSMUST00000156486.2, ENSMUST00000203147.3
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTTCACGTAAGGCCCAACCCTGCAACTCTGGTCTCCTCAACACCTaGCAAGCTATAACTGTCTCAGATCATCTTCAGCTTCACAACCAT | + |
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Preference number: 1 (lower is better) Translates to: GSRKAQPCNSGLLNT*QAITVSDHLQLHNH Trigger: ATGGTTGTGAAGCTGAAGATGATCTGAGACAGTTATAGCTTGGCAGGTGTTGAGGAGACCAGAGTTGCAGGGTTGGGCCTTACGTGAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR CCA 90 bp | AATAAAAATGCAGAAGTGTTTCAACATGAAGACATGAAACGGGATTaGGGCACTGGAGCTAACACAGCACACAGCCCACTCAGCGGGTTA | + |
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Preference number: 1 (lower is better) Translates to: NKNAEVFQHEDMKRD*GTGANTAHSPLSGL Trigger: TAACCCGCTGAGTGGGCTGTGTGCTGTGTTAGCTCCAGTGCCCCAATCCCGTTTCATGTCTTCATGTTGAAACACTTCTGCATTTTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR TCA 90 bp | AGAATGCATTATACTAAGCCATCAAAGTCTCCTTATCCCCTATGTTaGCCAAACAATGCGTCGCCAACATTGAATGCAGCAGTGCTGCAA | + |
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Preference number: 1 (lower is better) Translates to: RMHYTKPSKSPYPLC*PNNASPTLNAAVLQ Trigger: TTGCAGCACTGCTGCATTCAATGTTGGCGACGCATTGTTTGGTCAACATAGGGGATAAGGAGACTTTGATGGCTTAGTATAATGCATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR TCA 90 bp | ACATGTAAACTATGTTACACGGCTGGGAGGTTAATGTCTTTGAGATaGTTCAAAACCAAGCAGACAGTGATTTGCTTAAAATCAGACAGA | + |
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Preference number: 1 (lower is better) Translates to: TCKLCYTAGRLMSLR*FKTKQTVICLKSDR Trigger: TCTGTCTGATTTTAAGCAAATCACTGTCTGCTTGGTTTTGAATCATCTCAAAGACATTAACCTCCCAGCCGTGTAACATAGTTTACATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR CCA 90 bp | GACATGAAACGGGATTGGGGCACTGGAGCTAACACAGCACACAGCCCACTCAGCCCAACCCTGCAACTCTaGTCTCCTCAACACCTGCCA | + |
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Preference number: 2 (lower is better) Translates to: DMKRDWGTGANTAHSPLSPTLQL*SPQHLP Trigger: TGGCAGGTGTTGAGGAGACCAGAGTTGCAGGGTTGG...GCTGAGTGGGCTGTGTGCTGTGTTAGCTCCAGTGCCCCAATCCCGTTTCATGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR CCA 90 bp | ACACAGAGCAGGGATGGTCCGGAAGCTTCATTATCCTGCTTCCCATCAGTGTTCCATTGGATGAGTAGATaGACACAGAGCAGGGATGGT | + |
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Preference number: 2 (lower is better) Translates to: TQSRDGPEASLSCFPSVFHWMSR*TQSRDG Trigger: ACCATCCCTGCTCTGTGTCCATCTACTCATCCAATG...GAACACTGATGGGAAGCAGGATAATGAAGCTTCCGGACCATCCCTGCTCTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000203147.3 |
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| 3UTR-3UTR TCA 90 bp | CATGCACCAAATCCCAAGACAGAGTCTCAGGTCTTTAGTCTCTTCCACAGGCATTTGCTGAGGTCTCAATaGACGGAATCCCGTAACTCC | + |
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Preference number: 2 (lower is better) Translates to: HAPNPKTESQVFSLFHRHLLRSQ*TESRNS Trigger: GGAGTTACGGGATTCCGTTCATTGAGACCTCAGCAA...ATGCCTGTGGAAGAGACTAAAGACCTGAGACTCTGTCTTGGGATTTGGTGCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156486.2 |
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| 3UTR CAA 90 bp | ACTGAGGCACCAGTGGCCTGGGCAGCAGGAATGAAGTCCAAAGGATaGAGATTGAATTGTTGTAGTGGCCCTGAAAACCATCTATTAGTT | + |
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Preference number: 2 (lower is better) Translates to: TEAPVAWAAGMKSKG*RLNCCSGPENHLLV Trigger: AACTAATAGATGGTTTTCAGGGCCACTACAACAATTCAATCTCAATCCTTTGGACTTCATTCCTGCTGCCCAGGCCACTGGTGCCTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR TCA 90 bp | CATGCACCAAATCCCAAGACAGAGTCTCAGGTCTTTAGTCTCTTCCACAGGCATCTGTCTTGTCTTTGCTaGGGTCTCAATGAACGGAAT | + |
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Preference number: 2 (lower is better) Translates to: HAPNPKTESQVFSLFHRHLSCLC*GLNERN Trigger: ATTCCGTTCATTGAGACCTCAGCAAAGACAAGACAG...ATGCCTGTGGAAGAGACTAAAGACCTGAGACTCTGTCTTGGGATTTGGTGCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156486.2 |
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| 3UTR-3UTR GCA 90 bp | GCCAACATTGAATGCAGCAGTGCTGCAAAACCCAGTAGCGTTCGTCACAGGTTCGTGACCAAGATTAATTaGAGTGGAAAGCTACAGAAA | + |
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Preference number: 2 (lower is better) Translates to: ANIECSSAAKPSSVRHRFVTKIN*SGKLQK Trigger: TTTCTGTAGCTTTCCACTGCAATTAATCTTGGTCAC...GAACCTGTGACGAACGCTACTGGGTTTTGCAGCACTGCTGCATTCAATGTTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR CCA 90 bp | AAAAATGCAGAAGTGTTTCAACATGAAGACATGAAACGGGATTGGGGCACTGGAAAGCTCACCTTCCACTaGACTGTGCTCTGTCTGTTC | + |
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Preference number: 2 (lower is better) Translates to: KNAEVFQHEDMKRDWGTGKLTFH*TVLCLF Trigger: GAACAGACAGAGCACAGTCCAGTGGAAGGTGAGCTT...TCCAGTGCCCCAATCCCGTTTCATGTCTTCATGTTGAAACACTTCTGCATTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR TCA 90 bp | AGTATTCACATAACTGTACACCTTGTCCTTGACTTCTTCTTCTTCTTCTTCCCACTCCTTGCTAACTCCTaGGCCTGTTTCGTGTCTACT | + |
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Preference number: 2 (lower is better) Translates to: SIHITVHLVLDFFFFFFPLLANS*ACFVST Trigger: AGTAGACACGAAACAGGCTCAGGAGTTAGCAAGGAG...TGGGAAGAAGAAGAAGAAGAAGTCAAGGACAAGGTGTACAGTTATGTGAATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156486.2 |
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| 3UTR CAA 90 bp | GAGGTTAATGTCTTTGAGATGATTCAAAACCAAGCAGACAGTGATTaGCTTAAAATCAGACAGACATCCAGTCCTCATAGTCCAGTGATA | + |
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Preference number: 2 (lower is better) Translates to: EVNVFEMIQNQADSD*LKIRQTSSPHSPVI Trigger: TATCACTGGACTATGAGGACTGGATGTCTGTCTGATTTTAAGCAAATCACTGTCTGCTTGGTTTTGAATCATCTCAAAGACATTAACCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR CAA 90 bp | GACATGAAACGGGATTGGGGCACTGGAGCTAACACAGCACACAGCCCACTCAGCTCCAAAGGATTGAGATaGAATTGTTGTAGTGGCCCT | + |
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Preference number: 3 (lower is better) Translates to: DMKRDWGTGANTAHSPLSSKGLR*NCCSGP Trigger: AGGGCCACTACAACAATTCAATCTCAATCCTTTGGA...GCTGAGTGGGCTGTGTGCTGTGTTAGCTCCAGTGCCCCAATCCCGTTTCATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR GCA 72 bp | AAGGCCCAACCCTGCAACTCTGGTCTCCTCAACACCTaGCAAGCTATAACTGTCTCAGATCATCTTCAGCTT | + |
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Preference number: 3 (lower is better) Translates to: KAQPCNSGLLNT*QAITVSDHLQL Trigger: AAGCTGAAGATGATCTGAGACAGTTATAGCTTGGCAGGTGTTGAGGAGACCAGAGTTGCAGGGTTGGGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR GCA 72 bp | CCTATGTTGACCAAACAATGCGTCGCCAACATTGAATaGAGCAGTGCTGCAAAACCCAGTAGCGTTCGTCAC | + |
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Preference number: 3 (lower is better) Translates to: PMLTKQCVANIE*SSAAKPSSVRH Trigger: GTGACGAACGCTACTGGGTTTTGCAGCACTGCTGCATTCAATGTTGGCGACGCATTGTTTGGTCAACATAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR CAA 90 bp | CAGGGATGGTCCGGAAGCTTCATTATCCTGCTTCCCATCAGTGTTCACAGTTGGCATCAGTGTTCACAGTaGGTAAGAGAACTAGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: QGWSGSFIILLPISVHSWHQCSQ*VRELAR Trigger: CCTTGCTAGTTCTCTTACCAACTGTGAACACTGATG...CCAACTGTGAACACTGATGGGAAGCAGGATAATGAAGCTTCCGGACCATCCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 ENSMUST00000203147.3 |
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| 3UTR-3UTR CAA 90 bp | GACATGAAACGGGATTGGGGCACTGGAGCTAACACAGCACACAGCCCACTCAGCCTGTTCACACTAATTTaGAAAATTCCTACTGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: DMKRDWGTGANTAHSPLSLFTLI*KIPTEA Trigger: TGCCTCAGTAGGAATTTTCAAAATTAGTGTGAACAG...GCTGAGTGGGCTGTGTGCTGTGTTAGCTCCAGTGCCCCAATCCCGTTTCATGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR CAA 90 bp | GGACACAGAGCAGGGATGGTCCGGAAGCTTCATTATCCTGCTTCCCATCAGTGTCTGTACACCTTGTCCTaGACTTCTTCTTCTTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: GHRAGMVRKLHYPASHQCLYTLS*TSSSSS Trigger: AGAAGAAGAAGAAGAAGTCAAGGACAAGGTGTACAG...ACACTGATGGGAAGCAGGATAATGAAGCTTCCGGACCATCCCTGCTCTGTGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111710.8 |
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| 3UTR-3UTR CAA 90 bp | ATGCACCAAATCCCAAGACAGAGTCTCAGGTCTTTAGTCTCTTCCACAGGCATTCGTCAACACCCTGTCTaGTCTTTGCTGAGGTCTCAA | + |
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Preference number: 3 (lower is better) Translates to: MHQIPRQSLRSLVSSTGIRQHPV*SLLRSQ Trigger: TTGAGACCTCAGCAAAGACAAGACAGGGTGTTGACG...AATGCCTGTGGAAGAGACTAAAGACCTGAGACTCTGTCTTGGGATTTGGTGCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156486.2 |
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| 3UTR-3UTR CAA 90 bp | CATGCACCAAATCCCAAGACAGAGTCTCAGGTCTTTAGTCTCTTCCACAGGCATCTGTACACCTTGTCCTaGACTTCTTCTTCTTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: HAPNPKTESQVFSLFHRHLYTLS*TSSSSS Trigger: AGAAGAAGAAGAAGAAGTCAAGGACAAGGTGTACAG...ATGCCTGTGGAAGAGACTAAAGACCTGAGACTCTGTCTTGGGATTTGGTGCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111710.8 ENSMUST00000156486.2 |
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| 3UTR GCA 72 bp | ATCAAAGTCTCCTTATCCCCTATGTTGACCAAACAATaGGTCGCCAACATTGAATGCAGCAGTGCTGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: IKVSLSPMLTKQ*VANIECSSAAK Trigger: TTTTGCAGCACTGCTGCATTCAATGTTGGCGACGCATTGTTTGGTCAACATAGGGGATAAGGAGACTTTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR-3UTR CAA 90 bp | AGTATTCACATAACTGTACACCTTGTCCTTGACTTCTTCTTCTTCTTCTTCCCAGAATCCCGTAACTCCTaGCTAACTCCTGAGCCTGTT | + |
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Preference number: 3 (lower is better) Translates to: SIHITVHLVLDFFFFFFPESRNS*LTPEPV Trigger: AACAGGCTCAGGAGTTAGCAAGGAGTTACGGGATTC...TGGGAAGAAGAAGAAGAAGAAGTCAAGGACAAGGTGTACAGTTATGTGAATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156486.2 |
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| 3UTR TCA 72 bp | TATACTAAGCCATCAAAGTCTCCTTATCCCCTATGTTaGCCAAACAATGCGTCGCCAACATTGAATGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: YTKPSKSPYPLC*PNNASPTLNAA Trigger: TGCTGCATTCAATGTTGGCGACGCATTGTTTGGTCAACATAGGGGATAAGGAGACTTTGATGGCTTAGTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR TCA 72 bp | CAAATAAAAATGCAGAAGTGTTTCAACATGAAGACATaGAACGGGATTGGGGCACTGGAGCTAACACAGCAC | + |
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Preference number: 3 (lower is better) Translates to: QIKMQKCFNMKT*NGIGALELTQH Trigger: GTGCTGTGTTAGCTCCAGTGCCCCAATCCCGTTTCATGTCTTCATGTTGAAACACTTCTGCATTTTTATTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR TCA 72 bp | CTATGTTACACGGCTGGGAGGTTAATGTCTTTGAGATaGTTCAAAACCAAGCAGACAGTGATTTGCTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: LCYTAGRLMSLR*FKTKQTVICLK Trigger: TTTTAAGCAAATCACTGTCTGCTTGGTTTTGAATCATCTCAAAGACATTAACCTCCCAGCCGTGTAACATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR TCA 72 bp | TTAAAATCAGACAGACATCCAGTCCTCATAGTCCAGTaGTATTTCCATCTCATTTCAAATGATGTGAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: LKSDRHPVLIVQ*YFHLISNDVKG Trigger: ACCCTTCACATCATTTGAAATGAGATGGAAATATCACTGGACTATGAGGACTGGATGTCTGTCTGATTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| CDS-3UTR TCA 90 bp | GACATGAAACGGGATTGGGGCACTGGAGCTAACACAGCACACAGCCCACTCAGCCTCCTTGCTAACTCCTaGGCCTGTTTCGTGTCTACT | + |
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Preference number: 4 (lower is better) Translates to: DMKRDWGTGANTAHSPLSLLANS*ACFVST Trigger: AGTAGACACGAAACAGGCTCAGGAGTTAGCAAGGAG...GCTGAGTGGGCTGTGTGCTGTGTTAGCTCCAGTGCCCCAATCCCGTTTCATGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| 3UTR CAA 72 bp | GGGCAGGTGAGAGACAGGCTGAAAGCCAGCATAATGTaGGAGGGGAGTCCTGAAATGGGAGAATGGATACTG | + |
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Preference number: 4 (lower is better) Translates to: GQVRDRLKASIM*EGSPEMGEWIL Trigger: CAGTATCCATTCTCCCATTTCAGGACTCCCCTCCAACATTATGCTGGCTTTCAGCCTGTCTCTCACCTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| CDS-3UTR GCA 90 bp | GGACACAGAGCAGGGATGGTCCGGAAGCTTCATTATCCTGCTTCCCATCAGTGTGTACTGGTCCCTCATTaGACTGTACTCCTCTTGACC | + |
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Preference number: 4 (lower is better) Translates to: GHRAGMVRKLHYPASHQCVLVPH*TVLLLT Trigger: GGTCAAGAGGAGTACAGTGCAATGAGGGACCAGTAC...ACACTGATGGGAAGCAGGATAATGAAGCTTCCGGACCATCCCTGCTCTGTGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| CDS-3UTR TCA 90 bp | GCCAACATTGAATGCAGCAGTGCTGCAAAACCCAGTAGCGTTCGTCACAGGTTCGCACTGTACTCCTCTTaGCCTGCTGTGTCGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: ANIECSSAAKPSSVRHRFALYSS*PAVSRI Trigger: TATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGC...GAACCTGTGACGAACGCTACTGGGTTTTGCAGCACTGCTGCATTCAATGTTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| CDS-3UTR TCA 90 bp | CAGAGCAGGGATGGTCCGGAAGCTTCATTATCCTGCTTCCCATCAGTGTTCACAGCACTGTACTCCTCTTaGCCTGCTGTGTCGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: QSRDGPEASLSCFPSVFTALYSS*PAVSRI Trigger: TATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGC...TGTGAACACTGATGGGAAGCAGGATAATGAAGCTTCCGGACCATCCCTGCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| 3UTR CAA 72 bp | CCAGTGGCCTGGGCAGCAGGAATGAAGTCCAAAGGATaGAGATTGAATTGTTGTAGTGGCCCTGAAAACCAT | + |
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Preference number: 4 (lower is better) Translates to: PVAWAAGMKSKG*RLNCCSGPENH Trigger: ATGGTTTTCAGGGCCACTACAACAATTCAATCTCAATCCTTTGGACTTCATTCCTGCTGCCCAGGCCACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| CDS-3UTR TCA 90 bp | AGCAGGGATGGTCCGGAAGCTTCATTATCCTGCTTCCCATCAGTGTTCACAGTTCTGTCTTGTCTTTGCTaGGGTCTCAATGAACGGAAT | + |
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Preference number: 4 (lower is better) Translates to: SRDGPEASLSCFPSVFTVLSCLC*GLNERN Trigger: ATTCCGTTCATTGAGACCTCAGCAAAGACAAGACAG...AACTGTGAACACTGATGGGAAGCAGGATAATGAAGCTTCCGGACCATCCCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| CDS-3UTR TCA 90 bp | TCCTGCTTCCCATCAGTGTTCACAGTTGGTAAGAGAACTAGCAAGGAATCAACTCTCCTTGCTAACTCCTaGGCCTGTTTCGTGTCTACT | + |
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Preference number: 4 (lower is better) Translates to: SCFPSVFTVGKRTSKESTLLANS*ACFVST Trigger: AGTAGACACGAAACAGGCTCAGGAGTTAGCAAGGAG...AGTTGATTCCTTGCTAGTTCTCTTACCAACTGTGAACACTGATGGGAAGCAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| CDS-3UTR TCA 90 bp | ACACTAATTTTGAAAATTCCTACTGAGGCACCAGTGGCCTGGGCAGCAGGAATGCTGTCTTGTCTTTGCTaGGGTCTCAATGAACGGAAT | + |
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Preference number: 4 (lower is better) Translates to: TLILKIPTEAPVAWAAGMLSCLC*GLNERN Trigger: ATTCCGTTCATTGAGACCTCAGCAAAGACAAGACAG...CATTCCTGCTGCCCAGGCCACTGGTGCCTCAGTAGGAATTTTCAAAATTAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| CDS-3UTR GCA 90 bp | TTATCCTGCTTCCCATCAGTGTTCACAGTTGGTAAGAGAACTAGCAAGGAATCAGTACTGGTCCCTCATTaGACTGTACTCCTCTTGACC | + |
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Preference number: 4 (lower is better) Translates to: LSCFPSVFTVGKRTSKESVLVPH*TVLLLT Trigger: GGTCAAGAGGAGTACAGTGCAATGAGGGACCAGTAC...TGATTCCTTGCTAGTTCTCTTACCAACTGTGAACACTGATGGGAAGCAGGATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| 3UTR CAA 72 bp | GCCTGGGCAGCAGGAATGAAGTCCAAAGGATTGAGATaGAATTGTTGTAGTGGCCCTGAAAACCATCTATTA | + |
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Preference number: 4 (lower is better) Translates to: AWAAGMKSKGLR*NCCSGPENHLL Trigger: TAATAGATGGTTTTCAGGGCCACTACAACAATTCAATCTCAATCCTTTGGACTTCATTCCTGCTGCCCAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| CDS-3UTR CAA 90 bp | GCCAACATTGAATGCAGCAGTGCTGCAAAACCCAGTAGCGTTCGTCACAGGTTCCGTCAACACCCTGTCTaGTCTTTGCTGAGGTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: ANIECSSAAKPSSVRHRFRQHPV*SLLRSQ Trigger: TTGAGACCTCAGCAAAGACAAGACAGGGTGTTGACG...GAACCTGTGACGAACGCTACTGGGTTTTGCAGCACTGCTGCATTCAATGTTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032399.12 |
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| CDS-3UTR CAA 90 bp | ATGCACCAAATCCCAAGACAGAGTCTCAGGTCTTTAGTCTCTTCCACAGGCATTTGCACTGTACTCCTCTaGACCTGCTGTGTCGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: MHQIPRQSLRSLVSSTGICTVLL*TCCVEN Trigger: ATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGCA...AATGCCTGTGGAAGAGACTAAAGACCTGAGACTCTGTCTTGGGATTTGGTGCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| CDS-3UTR CAA 90 bp | TCCTGCTTCCCATCAGTGTTCACAGTTGGTAAGAGAACTAGCAAGGAATCAACTGAATCCCGTAACTCCTaGCTAACTCCTGAGCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: SCFPSVFTVGKRTSKESTESRNS*LTPEPV Trigger: AACAGGCTCAGGAGTTAGCAAGGAGTTACGGGATTC...AGTTGATTCCTTGCTAGTTCTCTTACCAACTGTGAACACTGATGGGAAGCAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| CDS-3UTR CAA 90 bp | TTATCCTGCTTCCCATCAGTGTTCACAGTTGGTAAGAGAACTAGCAAGGAATCATGCACTGTACTCCTCTaGACCTGCTGTGTCGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: LSCFPSVFTVGKRTSKESCTVLL*TCCVEN Trigger: ATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGCA...TGATTCCTTGCTAGTTCTCTTACCAACTGTGAACACTGATGGGAAGCAGGATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| CDS-3UTR CAA 90 bp | TCATTATCCTGCTTCCCATCAGTGTTCACAGTTGGTAAGAGAACTAGCAAGGAAGAATCCCGTAACTCCTaGCTAACTCCTGAGCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: SLSCFPSVFTVGKRTSKEESRNS*LTPEPV Trigger: AACAGGCTCAGGAGTTAGCAAGGAGTTACGGGATTC...TTCCTTGCTAGTTCTCTTACCAACTGTGAACACTGATGGGAAGCAGGATAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000111710.8 |
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| CDS-3UTR CAA 90 bp | TCCTGCTTCCCATCAGTGTTCACAGTTGGTAAGAGAACTAGCAAGGAATCAACTCTGTACACCTTGTCCTaGACTTCTTCTTCTTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SCFPSVFTVGKRTSKESTLYTLS*TSSSSS Trigger: AGAAGAAGAAGAAGAAGTCAAGGACAAGGTGTACAG...AGTTGATTCCTTGCTAGTTCTCTTACCAACTGTGAACACTGATGGGAAGCAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032399.12 ENSMUST00000203147.3 |
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| CDS-3UTR CAA 90 bp | AGTATTCACATAACTGTACACCTTGTCCTTGACTTCTTCTTCTTCTTCTTCCCACCTCCACTCTCTGTCTaGTCTTTGCTGAGGTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: SIHITVHLVLDFFFFFFPPPLSV*SLLRSQ Trigger: TTGAGACCTCAGCAAAGACAAGACAGAGAGTGGAGG...TGGGAAGAAGAAGAAGAAGAAGTCAAGGACAAGGTGTACAGTTATGTGAATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111710.8 |
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