Pregenerated sensors for KPNA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018362

Ensembl transcript IDs: ENSMUST00000106768.2, ENSMUST00000145331.8

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGAGCAATGTTGGTGAGTaGCCAAGCAGACTCAAACTG	+
Preference number: 2 (lower is better) Translates to: RICSTASKGGAGFLFRQRSNVGE*PSRLKL Trigger: CAGTTTGAGTCTGCTTGGGCACTCACCAACATTGCT...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
3UTR-3UTR CCA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGCATCCACCACAGCTTTaGTCTGTTCAGATGTTCCAG	+
Preference number: 2 (lower is better) Translates to: RICSTASKGGAGFLFRQRHPPQL*SVQMFQ Trigger: CTGGAACATCTGAACAGACCAAAGCTGTGGTGGATG...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
3UTR-3UTR GCA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGGTGAGCATGAGGAGATaGCAAGAGAGAAATAAACGC	+
Preference number: 2 (lower is better) Translates to: RICSTASKGGAGFLFRQRVSMRR*QERNKR Trigger: GCGTTTATTTCTCTCTTGGCATCTCCTCATGCTCAC...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
3UTR-3UTR TCA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGAGTAAGACAAATCTATaGGAACACAGAATAGCACAG	+
Preference number: 2 (lower is better) Translates to: RICSTASKGGAGFLFRQRSKTNL*EHRIAQ Trigger: CTGTGCTATTCTGTGTTCTCATAGATTTGTCTTACT...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
3UTR CAA 90 bp	CTGACATATCAAGGTACAAAACTAGTATCCAGAAGTGCAAGAAGTTaGAAGGAAGGACAGAAAACTATCCACTGGAGTGTGGGAAGGAAG	+
Preference number: 2 (lower is better) Translates to: LTYQGTKLVSRSARS*KEGQKTIHWSVGRK Trigger: CTTCCTTCCCACACTCCAGTGGATAGTTTTCTGTCCTTCCTTCAAACTTCTTGCACTTCTGGATACTAGTTTTGTACCTTGATATGTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106768.2
3UTR-3UTR CCA 90 bp	AATAATAAAATGGAACTAGAGATACAGGCCTATCACACACAAGGCCCTAGTGTGCAGAAAACTATCCACTaGAGTGTGGGAAGGAAGAAA	+
Preference number: 2 (lower is better) Translates to: NNKMELEIQAYHTQGPSVQKTIH*SVGRKK Trigger: TTTCTTCCTTCCCACACTCCAGTGGATAGTTTTCTG...CACACTAGGGCCTTGTGTGTGATAGGCCTGTATCTCTAGTTCCATTTTATTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106768.2
3UTR-3UTR CCA 90 bp	ATATCAAGGTACAAAACTAGTATCCAGAAGTGCAAGAAGTTTGAAGGAAGGACACTATCCACTGGAGTGTaGGAAGGAAGAAAAAGCATT	+
Preference number: 2 (lower is better) Translates to: ISRYKTSIQKCKKFEGRTLSTGV*EGRKSI Trigger: AATGCTTTTTCTTCCTTCCCACACTCCAGTGGATAG...TGTCCTTCCTTCAAACTTCTTGCACTTCTGGATACTAGTTTTGTACCTTGATAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106768.2
3UTR-3UTR CAA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGCCAGCCCGGATGATGTaGTCTATAGGAGGCTGTTTC	+
Preference number: 3 (lower is better) Translates to: RICSTASKGGAGFLFRQRPARMM*SIGGCF Trigger: GAAACAGCCTCCTATAGACAACATCATCCGGGCTGG...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
3UTR-3UTR CAA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGCCATCCACCACAGCTTaGGTCTGTTCAGATGTTCCA	+
Preference number: 3 (lower is better) Translates to: RICSTASKGGAGFLFRQRPSTTA*VCSDVP Trigger: TGGAACATCTGAACAGACCAAAGCTGTGGTGGATGG...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
CDS-3UTR TCA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGCATCAGGAAAGGAGCTaGCGTTTCTTCTTTTCAGCA	+
Preference number: 4 (lower is better) Translates to: RICSTASKGGAGFLFRQRHQERS*RFFFSA Trigger: TGCTGAAAAGAAGAAACGTCAGCTCCTTTCCTGATG...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
CDS-3UTR TCA 90 bp	AATAATAAAATGGAACTAGAGATACAGGCCTATCACACACAAGGCCCTAGTGTGCATCAGGAAAGGAGCTaGCGTTTCTTCTTTTCAGCA	+
Preference number: 4 (lower is better) Translates to: NNKMELEIQAYHTQGPSVHQERS*RFFFSA Trigger: TGCTGAAAAGAAGAAACGTCAGCTCCTTTCCTGATG...CACACTAGGGCCTTGTGTGTGATAGGCCTGTATCTCTAGTTCCATTTTATTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106768.2
CDS-3UTR CAA 90 bp	AGAATCTGCTCAACGGCGTCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGGTGCTGTCCTTCCCCTaGTTCTTGAACCTGTTAAGT	+
Preference number: 5 (lower is better) Translates to: RICSTASKGGAGFLFRQRVLSFP*FLNLLS Trigger: ACTTAACAGGTTCAAGAACAAGGGGAAGGACAGCAC...CCTTTGTCGAAACAAGAACCCTGCACCTCCCTTAGACGCCGTTGAGCAGATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145331.8
CDS-3UTR CAA 90 bp	AATAATAAAATGGAACTAGAGATACAGGCCTATCACACACAAGGCCCTAGTGTGGTGCTGTCCTTCCCCTaGTTCTTGAACCTGTTAAGT	+
Preference number: 5 (lower is better) Translates to: NNKMELEIQAYHTQGPSVVLSFP*FLNLLS Trigger: ACTTAACAGGTTCAAGAACAAGGGGAAGGACAGCAC...CACACTAGGGCCTTGTGTGTGATAGGCCTGTATCTCTAGTTCCATTTTATTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106768.2
CDS-3UTR CAA 90 bp	ATATCAAGGTACAAAACTAGTATCCAGAAGTGCAAGAAGTTTGAAGGAAGGACAAAGGTAGTCACCTGGTaGTTCCGGTTTTCCTGTAGC	+
Preference number: 5 (lower is better) Translates to: ISRYKTSIQKCKKFEGRTKVVTW*FRFSCS Trigger: GCTACAGGAAAACCGGAACAACCAGGTGACTACCTT...TGTCCTTCCTTCAAACTTCTTGCACTTCTGGATACTAGTTTTGTACCTTGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106768.2