Pregenerated sensors for KNCN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073774Ensembl transcript IDs: ENSMUST00000097918.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCCAGGGCAAAGGGGTCCTGTGGGTCTTTCCACGATTCTGGGAGTaGAGGAATCCGTTAGGGAGAGCATCACTGGAAGAGAAGGTAGGC | + |
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Preference number: 1 (lower is better) Translates to: GQGKGVLWVFPRFWE*RNPLGRASLEEKVG Trigger: GCCTACCTTCTCTTCCAGTGATGCTCTCCCTAACGGATTCCTTCACTCCCAGAATCGTGGAAAGACCCACAGGACCCCTTTGCCCTGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| 3UTR TCA 72 bp | CAGCATTCCCAGGGCTCATTTCCACATCGTCCAGCTTaGAGGAGGACCCCGAGACTGGAGTGTGGGGAGTGG | + |
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Preference number: 3 (lower is better) Translates to: QHSQGSFPHRPA*RRTPRLECGEW Trigger: CCACTCCCCACACTCCAGTCTCGGGGTCCTCCTTCAAGCTGGACGATGTGGAAATGAGCCCTGGGAATGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| 3UTR-3UTR CAA 90 bp | TTGTCCAGAACAATGAGGCCAGGGCAAAGGGGTCCTGTGGGTCTTTCCACGATTTCCACATCGTCCAGCTaGAAGGAGGACCCCGAGACT | + |
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Preference number: 3 (lower is better) Translates to: LSRTMRPGQRGPVGLSTISTSSS*KEDPET Trigger: AGTCTCGGGGTCCTCCTTCAAGCTGGACGATGTGGA...AATCGTGGAAAGACCCACAGGACCCCTTTGCCCTGGCCTCATTGTTCTGGACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| 3UTR TCA 72 bp | AATGAAGGAACAAAGTTGAGGTGTTGTCCAGAACAATaGGGCCAGGGCAAAGGGGTCCTGTGGGTCTTTCCA | + |
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Preference number: 3 (lower is better) Translates to: NEGTKLRCCPEQ*GQGKGVLWVFP Trigger: TGGAAAGACCCACAGGACCCCTTTGCCCTGGCCTCATTGTTCTGGACAACACCTCAACTTTGTTCCTTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS-3UTR CCA 90 bp | CTCATTTCCACATCGTCCAGCTTGAAGGAGGACCCCGAGACTGGAGTGTGGGGAGGGTTCTGGTCACTGTaGACAGGCCGCTGCGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: LISTSSSLKEDPETGVWGGFWSL*TGRCGL Trigger: GAGCCCGCAGCGGCCTGTCCACAGTGACCAGAACCC...TCCCCACACTCCAGTCTCGGGGTCCTCCTTCAAGCTGGACGATGTGGAAATGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS-3UTR CCA 90 bp | TCCACATCGTCCAGCTTGAAGGAGGACCCCGAGACTGGAGTGTGGGGAGTGGGAGCTTCTCCAGGGTTCTaGTCACTGTGGACAGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: STSSSLKEDPETGVWGVGASPGF*SLWTGR Trigger: GCGGCCTGTCCACAGTGACCAGAACCCTGGAGAAGC...TCCCACTCCCCACACTCCAGTCTCGGGGTCCTCCTTCAAGCTGGACGATGTGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| 3UTR CAA 72 bp | CCAGCATTCCCAGGGCTCATTTCCACATCGTCCAGCTaGAAGGAGGACCCCGAGACTGGAGTGTGGGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: PAFPGLISTSSS*KEDPETGVWGV Trigger: CACTCCCCACACTCCAGTCTCGGGGTCCTCCTTCAAGCTGGACGATGTGGAAATGAGCCCTGGGAATGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS-3UTR GCA 90 bp | AAGGAATCCGTTAGGGAGAGCATCACTGGAAGAGAAGGTAGGCCCAGCATTCCCGCCACACAGGCCAGCTaGAGGCAGCGGAAGTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KESVRESITGREGRPSIPATQAS*RQRKSL Trigger: CAGAGACTTCCGCTGCCTGCAGCTGGCCTGTGTGGC...GGGAATGCTGGGCCTACCTTCTCTTCCAGTGATGCTCTCCCTAACGGATTCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS-3UTR CCA 90 bp | GCTCATTTCCACATCGTCCAGCTTGAAGGAGGACCCCGAGACTGGAGTGTGGGGATGGCAGGTAGGATGTaGTCCAGGTTGAACCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: AHFHIVQLEGGPRDWSVGMAGRM*SRLNRA Trigger: GGCTCGGTTCAACCTGGACCACATCCTACCTGCCAT...CCCCACACTCCAGTCTCGGGGTCCTCCTTCAAGCTGGACGATGTGGAAATGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS-3UTR CCA 90 bp | AAGGAATCCGTTAGGGAGAGCATCACTGGAAGAGAAGGTAGGCCCAGCATTCCCTTCTCAGGTTTCCTATaGCAGGTAGGATGTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KESVRESITGREGRPSIPFSGFL*QVGCGP Trigger: TGGACCACATCCTACCTGCCATAGGAAACCTGAGAA...GGGAATGCTGGGCCTACCTTCTCTTCCAGTGATGCTCTCCCTAACGGATTCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CCA 90 bp | CCTCCTCAGTTCCCCGGCCTCCAGGCTTCAGCTTCTCCAGGGTTCTaGTCACTGTGGACAGGCCGCTGCGGGCTCCTTCTTTATTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: PPQFPGLQASASPGF*SLWTGRCGLLLYCC Trigger: ACAGCAATAAAGAAGGAGCCCGCAGCGGCCTGTCCACAGTGACCAGAACCCTGGAGAAGCTGAAGCCTGGAGGCCGGGGAACTGAGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS-3UTR CAA 90 bp | CCCAGGGCTCATTTCCACATCGTCCAGCTTGAAGGAGGACCCCGAGACTGGAGTAGGATGTGGTCCAGGTaGAACCGAGCCTTCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: PRAHFHIVQLEGGPRDWSRMWSR*NRAFRK Trigger: CTTCCTGAAGGCTCGGTTCAACCTGGACCACATCCT...ACTCCAGTCTCGGGGTCCTCCTTCAAGCTGGACGATGTGGAAATGAGCCCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS-3UTR CAA 90 bp | AAGGAATCCGTTAGGGAGAGCATCACTGGAAGAGAAGGTAGGCCCAGCATTCCCACAGCAGCAGCAGCCTaGGACACGGAGACACCGATG | + |
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Preference number: 5 (lower is better) Translates to: KESVRESITGREGRPSIPTAAAA*DTETPM Trigger: CATCGGTGTCTCCGTGTCCAAGGCTGCTGCTGCTGT...GGGAATGCTGGGCCTACCTTCTCTTCCAGTGATGCTCTCCCTAACGGATTCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CCA 90 bp | TTGTTGCTAGATCTTCCCTCCCCATGGTCTGGTCCTGAGTTAGGATaGATTCTCAGGTTTCCTATGGCAGGTAGGATGTGGTCCAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LLLDLPSPWSGPELG*ILRFPMAGRMWSRL Trigger: CAACCTGGACCACATCCTACCTGCCATAGGAAACCTGAGAATCCATCCTAACTCAGGACCAGACCATGGGGAGGGAAGATCTAGCAACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CCA 90 bp | CGGGCTCCTTCTTTATTGCTGTTGTTGCTAGATCTTCCCTCCCCATaGTCTGGTCCTGAGTTAGGATGGATTCTCAGGTTTCCTATGGCA | + |
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Preference number: 5 (lower is better) Translates to: RAPSLLLLLLDLPSP*SGPELGWILRFPMA Trigger: TGCCATAGGAAACCTGAGAATCCATCCTAACTCAGGACCAGACCATGGGGAGGGAAGATCTAGCAACAACAGCAATAAAGAAGGAGCCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CAA 90 bp | AGGGTTCTGGTCACTGTGGACAGGCCGCTGCGGGCTCCTTCTTTATaGCTGTTGTTGCTAGATCTTCCCTCCCCATGGTCTGGTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: RVLVTVDRPLRAPSL*LLLLDLPSPWSGPE Trigger: CTCAGGACCAGACCATGGGGAGGGAAGATCTAGCAACAACAGCAATAAAGAAGGAGCCCGCAGCGGCCTGTCCACAGTGACCAGAACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CAA 72 bp | GTGGACAGGCCGCTGCGGGCTCCTTCTTTATTGCTGTaGTTGCTAGATCTTCCCTCCCCATGGTCTGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: VDRPLRAPSLLL*LLDLPSPWSGP Trigger: AGGACCAGACCATGGGGAGGGAAGATCTAGCAACAACAGCAATAAAGAAGGAGCCCGCAGCGGCCTGTCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CAA 90 bp | GTCACTGTGGACAGGCCGCTGCGGGCTCCTTCTTTATTGCTGTTGTaGCTAGATCTTCCCTCCCCATGGTCTGGTCCTGAGTTAGGATGG | + |
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Preference number: 6 (lower is better) Translates to: VTVDRPLRAPSLLLL*LDLPSPWSGPELGW Trigger: CCATCCTAACTCAGGACCAGACCATGGGGAGGGAAGATCTAGCAACAACAGCAATAAAGAAGGAGCCCGCAGCGGCCTGTCCACAGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CAA 90 bp | CTGGTCACTGTGGACAGGCCGCTGCGGGCTCCTTCTTTATTGCTGTaGTTGCTAGATCTTCCCTCCCCATGGTCTGGTCCTGAGTTAGGA | + |
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Preference number: 6 (lower is better) Translates to: LVTVDRPLRAPSLLL*LLDLPSPWSGPELG Trigger: TCCTAACTCAGGACCAGACCATGGGGAGGGAAGATCTAGCAACAACAGCAATAAAGAAGGAGCCCGCAGCGGCCTGTCCACAGTGACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CAA 72 bp | GTCACTGTGGACAGGCCGCTGCGGGCTCCTTCTTTATaGCTGTTGTTGCTAGATCTTCCCTCCCCATGGTCT | + |
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Preference number: 6 (lower is better) Translates to: VTVDRPLRAPSL*LLLLDLPSPWS Trigger: AGACCATGGGGAGGGAAGATCTAGCAACAACAGCAATAAAGAAGGAGCCCGCAGCGGCCTGTCCACAGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS TCA 72 bp | GTTGTTGCTAGATCTTCCCTCCCCATGGTCTGGTCCTaGGTTAGGATGGATTCTCAGGTTTCCTATGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: VVARSSLPMVWS*VRMDSQVSYGR Trigger: CCTGCCATAGGAAACCTGAGAATCCATCCTAACTCAGGACCAGACCATGGGGAGGGAAGATCTAGCAACAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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| CDS CCA 72 bp | TCTTTATTGCTGTTGTTGCTAGATCTTCCCTCCCCATaGTCTGGTCCTGAGTTAGGATGGATTCTCAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: SLLLLLLDLPSP*SGPELGWILRF Trigger: AAACCTGAGAATCCATCCTAACTCAGGACCAGACCATGGGGAGGGAAGATCTAGCAACAACAGCAATAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097918.3 |
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