RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KMT2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006307

Ensembl transcript IDs: ENSMUST00000006470.14, ENSMUST00000108154.9, ENSMUST00000131002.2

Found 771 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCAGGCCAGGGTGAGATaGCAGCGGGCACGTGAGGAA +
Preference number: 2 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRQARVR*QRAREE
Trigger: TTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
3UTR-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGCCACAGGCCAGGGTaGGATGGCAGCGGGCACGTG +
Preference number: 2 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSHRPG*DGSGHV
Trigger: CACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
3UTR-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACAGGCCAGGGTGAGATaGCAGCGGGCACGTGAGGAA +
Preference number: 2 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRQARVR*QRAREE
Trigger: TTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
3UTR-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAGCCACAGGCCAGGGTaGGATGGCAGCGGGCACGTG +
Preference number: 2 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGSHRPG*DGSGHV
Trigger: CACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
3UTR-3UTR GCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGTCCTGCCCCACTACATaGCCACATTCACCATGGACA +
Preference number: 2 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGSCPTT*PHSPWT
Trigger: TGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGA...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
3UTR CCA 72 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATaGCAGCGGGCACGTGAGGAATCCGGGCAGCCATGG +
Preference number: 3 (lower is better)
Translates to: DTETREPQARVR*QRAREESGQPW
Trigger: CCATGGCTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTCTTTCGGCTCCGTTaGCTCGGCCGCCGCGGCCCC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLFRLR*LGRRGP
Trigger: GGGGCCGCGGCGGCCGAGGCAACGGAGCCGAAAGAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGCGCCGTCTACGCGTaGCCCGGGTTGGGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQGAVYA*PGLGSW
Trigger: CCAGCTACCCAACCCGGGCCACGCGTAGACGGCGCC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGTAGAGGGTTCACGTaGCCGTGCCCGGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQSRGFT*PCPAPG
Trigger: CCCCGGAGCCGGGCACGGGCACGTGAACCCTCTACT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGTCCGCCTCGGCCTCTaGCCCTGCCTCCACGGCCTC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESVRLGL*PCLHGL
Trigger: GAGGCCGTGGAGGCAGGGGCAGAGGCCGAGGCGGAC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGTAGGAGCTGGGTCTaGAAGGCCTGCGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQGRSWV*KACGGC
Trigger: GCAGCCCCCGCAGGCCTTGCAGACCCAGCTCCTACC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTGGTGGAGGAGCAGGTaGAGGTGGCGGCAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQWWRSR*RWRQLP
Trigger: CGGGAGCTGCCGCCACCTCCACCTGCTCCTCCACCA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGAGGTCCTCCGGGATaGTGGTGGCCTGGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQGGPPG*WWPGGQ
Trigger: CTGGCCACCAGGCCACCACCATCCCGGAGGACCTCC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGATGGTGGGATGGCAGTaGCCGCCGTGGTGTGTGGGC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQMVGWQ*PPWCVG
Trigger: GCCCACACACCACGGCGGTCACTGCCATCCCACCAT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGCGCCGTCTACGCGTaGCCCGGGTTGGGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGAVYA*PGLGSW
Trigger: CCAGCTACCCAACCCGGGCCACGCGTAGACGGCGCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGAGAGGGAGGGCACTaGGGCGGGGTACATCTTCAG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQGEGGH*GGVHLQ
Trigger: CTGAAGATGTACCCCGCCTCAGTGCCCTCCCTCTCC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGACAGCGCACACAGGCTaGACAGATCCAGTGGCGCCG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQTAHTG*TDPVAP
Trigger: CGGCGCCACTGGATCTGTTCAGCCTGTGTGCGCTGT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGTAGAGGGTTCACGTaGCCGTGCCCGGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESSRGFT*PCPAPG
Trigger: CCCCGGAGCCGGGCACGGGCACGTGAACCCTCTACT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGTAGGAGCTGGGTCTaGAAGGCCTGCGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGRSWV*KACGGC
Trigger: GCAGCCCCCGCAGGCCTTGCAGACCCAGCTCCTACC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTCGGGGAGCACACGGTaGTGGGAGGCCAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQSGSTR*WEARKL
Trigger: CAACTTCCTGGCCTCCCAGCACCGTGTGCTCCCCGA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCGGGCAGCATTGCCGTaGATGGTGGCGTCCACCACA +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQRAALP*MVASTT
Trigger: TGTGGTGGACGCCACCATGCACGGCAATGCTGCCCG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGTGCCCTCTGGTCCTaGCCGAGCAGCTTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGALWS*PSSFPL
Trigger: GAGAGGGAAGCTGCTCGGTCAGGACCAGAGGGCACC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGACCATGGCCCGAGCCTaGCCCAAGGCCACAGCAGCG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARETMARA*PKATAA
Trigger: CGCTGCTGTGGCCTTGGGTCAGGCTCGGGCCATGGT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGCTCTGGAAAGCTGCTaGAGGATCCCCTGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQALESC*RIPWRL
Trigger: CAGCCTCCAGGGGATCCTTCAGCAGCTTTCCAGAGC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGAGCCAGCTCCCCTaGGGTAGGTGTGAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGSQLP*GRCEGC
Trigger: ACAGCCCTCACACCTACCTCAGGGGAGCTGGCTCCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGCTGCAGGGTGGGTTTaGGGGGCCGGCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREAAGWV*GAGSAP
Trigger: AGGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTTCGGGCCTTGAGCTaGAACACAGGCTGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLRALS*NTGCRV
Trigger: CACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGCTGCTTCCCATCCTaGCCACACTGGGTGCACAGC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQSCFPS*PHWVHS
Trigger: GCTGTGCACCCAGTGTGGGCAGGATGGGAAGCAGCT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCTCCCTCTCTGCCCGCTaGCTAGGAGTCAGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESSLSAR*LGVRGG
Trigger: GCCTCCCCTGACTCCTAGCCAGCGGGCAGAGAGGGA...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTGGTGGAGGAGCAGGTaGAGGTGGCGGCAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREWWRSR*RWRQLP
Trigger: CGGGAGCTGCCGCCACCTCCACCTGCTCCTCCACCA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTGTGGTGGTAGTGCCTaGGGTAGGAGCTGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQCGGSA*GRSWVC
Trigger: GCAGACCCAGCTCCTACCCCAGGCACTACCACCACA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGAAGCTCCAGGCTGGTaGCACGTCTGGTGGACCGAA +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQEAPGW*HVWWTE
Trigger: TTCGGTCCACCAGACGTGCCACCAGCCTGGAGCTTC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTCACTTGGGGTAAACTaGGGGGCCCGAAGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQSLGVN*GARRSK
Trigger: CTTGCTCCTTCGGGCCCCTCAGTTTACCCCAAGTGA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTGATCCCTGGCACATaGTGGGCATCCTCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLIPGT*WASSKD
Trigger: GTCCTTGGAGGATGCCCATCATGTGCCAGGGATCAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAGTAGGAGGGAGTCCTaGTCCTCGGGCCCGGGAGTG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARESRRES*SSGPGV
Trigger: CACTCCCGGGCCCGAGGAGCAGGACTCCCTCCTACT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCCTGCCCACACTGGGTaGACAGCAGCAATGGGCCTG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESPAHTG*TAAMGL
Trigger: CAGGCCCATTGCTGCTGTGCACCCAGTGTGGGCAGG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGATCCCCTGGAGGCTaGCCCGATTCTGGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGSPGG*PDSGVS
Trigger: AGAGACCCCAGAATCGGGGCAGCCTCCAGGGGATCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTCCGAGCATCCACTGTaGTCCAATACAGGCGGGAGC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQSEHPL*SNTGGS
Trigger: GCTCCCGCCTGTATTGGAGCACAGTGGATGCTCGGA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGGGTTGGGGTGCTTaGGACCGCCGGAGAAGTTCA +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGGWGA*DRRRSS
Trigger: TGAACTTCTCCGGCGGTCCCAAGCACCCCAACCCCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGAGCTCGGTGCACCTaGGGCAGAGGCTGTAATCTC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQRARCT*GRGCNL
Trigger: GAGATTACAGCCTCTGCCCCAGGTGCACCGAGCTCT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGGTCTTCAGGAGGTTaGGCTCTGTCGCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQRSSGG*ALSPAA
Trigger: AGCAGCAGGCGACAGAGCCCAACCTCCTGAAGACCT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGGAGTCAAGGGTGGTaGCGGAAGCTTTGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQRSQGW*RKLCLF
Trigger: GAAGAGGCAAAGCTTCCGTCACCACCCTTGACTCCT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGCTCTGGAAAGCTGCTaGAGGATCCCCTGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESALESC*RIPWRL
Trigger: CAGCCTCCAGGGGATCCTTCAGCAGCTTTCCAGAGC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGCCTTCCACATGGATaGCACGAGAGAAGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQGLPHG*HERSSW
Trigger: CCAACTGCTTCTCTCGTGTCATCCATGTGGAAGGCC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGATTGGTCCGCCCCACTaGCCTAGGCTCAGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREIGPPH*PRLRLC
Trigger: GCAGAGCCTGAGCCTAGGGCAGTGGGGCGGACCAAT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTTTCCTCCTCAGGCTaGTCCCCAGGATTGTTCAGG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLSSSG*SPGLFR
Trigger: CCTGAACAATCCTGGGGAGCAGCCTGAGGAGGAAAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCGGGCAGCATTGCCGTaGATGGTGGCGTCCACCACA +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARERAALP*MVASTT
Trigger: TGTGGTGGACGCCACCATGCACGGCAATGCTGCCCG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCCTCTTCTCAGGGAGTaGGACTGGGGTAGATGGGGG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESPLLRE*DWGRWG
Trigger: CCCCCATCTACCCCAGTCCCACTCCCTGAGAAGAGG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTCATCTTCTTGCCATaGTGGGATGGCAGTGACCGC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLIFLP*WDGSDR
Trigger: GCGGTCACTGCCATCCCACCATGGCAAGAAGATGAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCAGTCCCCAGCAGGCTaGCTGCAAAGTCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESQSPAG*LQSPGQ
Trigger: CTGACCTGGACTTTGCAGCCAGCCTGCTGGGGACTG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCATGACAGCATCGTGGTaGATGCCCAGGAGCCGCGCT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESMTASW*MPRSRA
Trigger: AGCGCGGCTCCTGGGCATCCACCACGATGCTGTCAT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGACGGCAGACATGTTTaGTTCGGGGGCCTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQDGRHV*FGGLVK
Trigger: CTTTACAAGGCCCCCGAATCAAACATGTCTGCCGTC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAAGGCCACAGCAGCGTaGCGGCAGACATGTTTGATT +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQKATAA*RQTCLI
Trigger: AATCAAACATGTCTGCCGTCACGCTGCTGTGGCCTT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGACCATGGCCCGAGCCTaGCCCAAGGCCACAGCAGCG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGTMARA*PKATAA
Trigger: CGCTGCTGTGGCCTTGGGTCAGGCTCGGGCCATGGT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGATGGTGGGATGGCAGTaGCCGCCGTGGTGTGTGGGC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRMVGWQ*PPWCVG
Trigger: GCCCACACACCACGGCGGTCACTGCCATCCCACCAT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGGCGCCTTCGGGCCTTaGGCTGCAACACAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRGAFGP*AATQAA
Trigger: TGCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTCGTAGTCTTCATCTaGGAGTCCCTCACACTTGGC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLVVFI*ESLTLG
Trigger: GCCAAGTGTGAGGGACTCTCAGATGAAGACTACGAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCCTCCGAGACGGTaGGTAGTTGGGCACTTTGAT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGPPRR*VVGHFD
Trigger: ATCAAAGTGCCCAACTACTCACCGTCTCGGAGGCCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGCCCACTCCTGGTCCTaGAGGAGGAGTCCCCTGTCC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRAHSWS*RRSPLS
Trigger: GGACAGGGGACTCCTCCTTCAGGACCAGGAGTGGGC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCTGATCCCTGGCACATaGTGGGCATCCTCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESLIPGT*WASSKD
Trigger: GTCCTTGGAGGATGCCCATCATGTGCCAGGGATCAG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCGGATTCCCCGTCACTaGTCTCTTCCTCCGGCATGC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARERIPRH*SLPPAC
Trigger: GCATGCCGGAGGAAGAGAGCAGTGACGGGGAATCCG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGACCAGGTCCCTCCTTaGATTTCCAACTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQDQVPP*ISNCQL
Trigger: AAGCTGGCAGTTGGAAATGCAAGGAGGGACCTGGTC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAGTGGGAGAAAGGGTaGCCTCTGGTCCTGACCGAG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREEWEKG*PLVLTE
Trigger: CTCGGTCAGGACCAGAGGGCACCCTTTCTCCCACTC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGTGATGGAGGTGGCTaGGCTTGTGGTTGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGDGGG*ACGCCG
Trigger: ACCACAGCAACCACAAGCGCAGCCACCTCCATCACC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCATCTGCCTTCCACGTaGAACAGCAGCATGGACGTT +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQHLPST*NSSMDV
Trigger: AACGTCCATGCTGCTGTTGCACGTGGAAGGCAGATG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCTGTCATCCTGGAAGATaGAGTAGCTGGCCCGGGCAC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESCHPGR*SSWPGH
Trigger: GTGCCCGGGCCAGCTACTGCATCTTCCAGGATGACA...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTGGTGGACCGAAGCTaGACCTCATCCTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLVDRS*TSSSSS
Trigger: TGAAGAAGAGGATGAGGTGCAGCTTCGGTCCACCAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCCTCTTCTCAGGGAGTaGGACTGGGGTAGATGGGGG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREPLLRE*DWGRWG
Trigger: CCCCCATCTACCCCAGTCCCACTCCCTGAGAAGAGG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTGTGGTGGTAGTGCCTaGGGTAGGAGCTGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARECGGSA*GRSWVC
Trigger: GCAGACCCAGCTCCTACCCCAGGCACTACCACCACA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGACGCGTGGCCCGGGTTaGGTAGCTGGGTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGTRGPG*VAGSQA
Trigger: TGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAGAAGGAGCGAGGGGTaGGAGGAGGGCCATTGCTTG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARERRSEG*EEGHCL
Trigger: CAAGCAATGGCCCTCCTCCCACCCCTCGCTCCTTCT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGAAGATGGACTTCCTaGAGAGGGCAGAGGACCAAA +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQGRWTS*RGQRTK
Trigger: TTTGGTCCTCTGCCCTCTCCAGGAAGTCCATCTTCC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGACGCCGAGATCGCCTTaGGGGAGCTGGAAAGTCCGA +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARETPRSP*GSWKVR
Trigger: TCGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTCGGGTGGGGTCAGCTaGGCTAGTGGACAGGCTTTG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARESGGVS*ASGQAL
Trigger: CAAAGCCTGTCCACTAGCCCAGCTGACCCCACCCGA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCTTCTTCATCACAGGTaGCTCCCTCGGGGAGCACAC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESLLHHR*LPRGAH
Trigger: GTGTGCTCCCCGAGGGAGCCACCTGTGATGAAGAAG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAAGCTCCAGGCTGGTaGCACGTCTGGTGGACCGAA +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREEAPGW*HVWWTE
Trigger: TTCGGTCCACCAGACGTGCCACCAGCCTGGAGCTTC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGGAGAGGGAGGGCACTaGGGCGGGGTACATCTTCAG +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRGEGGH*GGVHLQ
Trigger: CTGAAGATGTACCCCGCCTCAGTGCCCTCCCTCTCC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCTGTGGCTCCAGGCTTaGGGCAGAGCTCACAGCGCA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRLWLQA*GRAHSA
Trigger: TGCGCTGTGAGCTCTGCCTCAAGCCTGGAGCCACAG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGGGATCCAGATTCTaGATGGGGGAGTGGTGTACA +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGGSRF*MGEWCT
Trigger: TGTACACCACTCCCCCATTCAGAATCTGGATCCCCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCCACTGGTAACACACTaGGCAGGGGTCCTGGGGGCA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRPLVTH*AGVLGA
Trigger: TGCCCCCAGGACCCCTGCTCAGTGTGTTACCAGTGG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGTTCAGTCAGTGCCTaGACCATCCGTTCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESSSVSA*TIRSVP
Trigger: GGGCACAGAACGGATGGTGCAGGCACTGACTGAACT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGTCCGCCTCGGCCTCTaGCCCTGCCTCCACGGCCTC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGVRLGL*PCLHGL
Trigger: GAGGCCGTGGAGGCAGGGGCAGAGGCCGAGGCGGAC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCCTGCCCACACTGGGTaGACAGCAGCAATGGGCCTG +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRPAHTG*TAAMGL
Trigger: CAGGCCCATTGCTGCTGTGCACCCAGTGTGGGCAGG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTCCGAGCATCCACTGTaGTCCAATACAGGCGGGAGC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARESEHPL*SNTGGS
Trigger: GCTCCCGCCTGTATTGGAGCACAGTGGATGCTCGGA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGGCTCACCCTCCCCTaGCATCTTCACAAATACTTG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQRLTLP*HLHKYL
Trigger: CAAGTATTTGTGAAGATGGCAGGGGAGGGTGAGCCT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCGGGCAGCATTGCCGTaGATGGTGGCGTCCACCACA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRRAALP*MVASTT
Trigger: TGTGGTGGACGCCACCATGCACGGCAATGCTGCCCG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCAGAGCGCAGGGAACTaGGGGCCACATCTTCATCTG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREQSAGN*GPHLHL
Trigger: CAGATGAAGATGTGGCCCCCAGTTCCCTGCGCTCTG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGACCGGCTGGCCGTCCTaGGGGCCTTCCCCGAGACCG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGTGWPS*GPSPRP
Trigger: CGGTCTCGGGGAAGGCCCCCAGGACGGCCAGCCGGT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCTCTTCCTGCTTCTCTaGGGCTGGATATGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARELFLLL*GWIWGR
Trigger: CCTCCCCCATATCCAGCCCCAGAGAAGCAGGAAGAG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGAAGCCTCCACCTTTaGAGGTTTGGGAGGATCTTC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQRSLHL*RFGRIF
Trigger: GAAGATCCTCCCAAACCTCCAAAGGTGGAGGCTTCT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAGAGCTCGGTGCACCTaGGGCAGAGGCTGTAATCTC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARERARCT*GRGCNL
Trigger: GAGATTACAGCCTCTGCCCCAGGTGCACCGAGCTCT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGAGTCCCTCACACTTaGCATGCACCCAGTGGTCAC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESRVPHT*HAPSGH
Trigger: GTGACCACTGGGTGCATGCCAAGTGTGAGGGACTCT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGCTGGGTCCTTGCTCTaGAAAGCTGCTGAAGGATCC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESAGSLL*KAAEGS
Trigger: GGATCCTTCAGCAGCTTTCCAGAGCAAGGACCCAGC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGCAGATCATCATGATTaGGGGGCTCTGAGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESADHHD*GALRKG
Trigger: CCCCTTCCTCAGAGCCCCCCAATCATGATGATCTGC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGGAGCTTCTGCAAGTaGCAGCAAAGGACACCGGTC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESRSFCK*QQRTPV
Trigger: GACCGGTGTCCTTTGCTGCCACTTGCAGAAGCTCCT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGTGGACCAACCCGTTTaGGGACCTGGTTTTCTTTGT +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQVDQPV*GPGFLC
Trigger: ACAAAGAAAACCAGGTCCCCAAACGGGTTGGTCCAC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAAGATGACAGCATCGTaGTGGATGCCCAGGAGCCGC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREKMTAS*WMPRSR
Trigger: GCGGCTCCTGGGCATCCACCACGATGCTGTCATCTT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTGGTGGCACGTCTGGTaGACCGAAGCTGCACCTCAT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREWWHVW*TEAAPH
Trigger: ATGAGGTGCAGCTTCGGTCCACCAGACGTGCCACCA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCAGCATTGCCGTGCATaGTGGCGTCCACCACATCAA +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESQHCRA*WRPPHQ
Trigger: TTGATGTGGTGGACGCCACCATGCACGGCAATGCTG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTTGGGCTCACATGAGTaGTTGATGAATCGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLGSHE*LMNRAA
Trigger: TGCTGCCCGATTCATCAACCACTCATGTGAGCCCAA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAGGGTCATCCAGGTGTaGGAAAGCAGCTGGGTCCTT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARERVIQV*ESSWVL
Trigger: AAGGACCCAGCTGCTTTCTCACACCTGGATGACCCT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAAGTTGCTGAGACATaGGGACAGGCAGCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREEVAET*GQAAAN
Trigger: GTTGGCTGCTGCCTGTCCTCATGTCTCAGCAACTTC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGTAGTTGGGCACTTTaGTTCGAGCCCCTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESSSWAL*FEPLRR
Trigger: CCTTCTCAGGGGCTCGAATCAAAGTGCCCAACTACT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGAAATCCACAATTTCTaGAGGCAGGTCTTCAGGAGG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQEIHNF*RQVFRR
Trigger: CCTCCTGAAGACCTGCCTTCAGAAATTGTGGATTTC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGAGGAGACTCTTCCTaGTTCTCTGGGGCTGGATAT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGGDSS*FSGAGY
Trigger: ATATCCAGCCCCAGAGAAGCAGGAAGAGTCTCCTCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGAGCAGCTTCCCTCTCTaGCCGCTGGCTAGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRSSFPL*PLARSQ
Trigger: CTGACTCCTAGCCAGCGGGCAGAGAGGGAAGCTGCT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTTCATAGCAGCGTGTaGAAATTGGGCAGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLHSSV*KLGSSS
Trigger: GGAACTACTGCCCAATTTGCACACGCTGCTATGAAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTCGGGGAGCACACGGTaGTGGGAGGCCAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGSGSTR*WEARKL
Trigger: CAACTTCCTGGCCTCCCAGCACCGTGTGCTCCCCGA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGGGCTCGACCTCGCTaGGACCGAAGCGCAGAGCGC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGARPR*DRSAER
Trigger: GCGCTCTGCGCTTCGGTCCCAGCGAGGTCGAGCCCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGCCTCCGGGAGGGAGTaGCAGGGGCAGGTGGTGGAG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGASGRE*QGQVVE
Trigger: CTCCACCACCTGCCCCTGCCACTCCCTCCCGGAGGC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGATCTTCTTGCCATGGTaGGATGGCAGTGACCGCCGT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREIFLPW*DGSDRR
Trigger: ACGGCGGTCACTGCCATCCCACCATGGCAAGAAGAT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCTCCAGACAGAAGGGGTaGAAAGGATCGCAGCAGACT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESSRQKG*KGSQQT
Trigger: AGTCTGCTGCGATCCTTTCCACCCCTTCTGTCTGGA...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGCGCCGTCTACGCGTaGCCCGGGTTGGGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGAVYA*PGLGSW
Trigger: CCAGCTACCCAACCCGGGCCACGCGTAGACGGCGCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTTGGCATGCACCCAGTaGTCACACTGTGCACACTGC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARELACTQ*SHCAHC
Trigger: GCAGTGTGCACAGTGTGACCACTGGGTGCATGCCAA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAGAGTCCCTCACACTTaGCATGCACCCAGTGGTCAC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARERVPHT*HAPSGH
Trigger: GTGACCACTGGGTGCATGCCAAGTGTGAGGGACTCT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGATCCAGATTCTGAATaGGGGAGTGGTGTACAGGAT +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQDPDSE*GSGVQD
Trigger: ATCCTGTACACCACTCCCCCATTCAGAATCTGGATC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTCGCCTTGGGGGAGCTaGAAAGTCCGAGTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRSPWGS*KVRVSH
Trigger: GTGGGAGACTCGGACTTTCCAGCTCCCCCAAGGCGA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGACGCCGAGATCGCCTTaGGGGAGCTGGAAAGTCCGA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRTPRSP*GSWKVR
Trigger: TCGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCAATACCCGGACCCCTaGAGCTCCAGGGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGQYPDP*SSREPS
Trigger: GCTTGGCTCCCTGGAGCTCCAGGGGTCCGGGTATTG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGTTTTCTTTGTCCTCTaGAGATGGAGGCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQVFFVL*RWRLFL
Trigger: GAGGAAGAGCCTCCATCTCCAGAGGACAAAGAAAAC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGATGACAGCATCGTGGTaGATGCCCAGGAGCCGCGCT +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRMTASW*MPRSRA
Trigger: AGCGCGGCTCCTGGGCATCCACCACGATGCTGTCAT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCGATTCTGGGGTCTCTaGTTCCTGTTGTCTCCACTG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARERFWGL*FLLSPL
Trigger: CAGTGGAGACAACAGGAATCAGAGACCCCAGAATCG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCAGCATCCCCATACTTaGGACAGAGTGCACACTGAC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREQHPHT*DRVHTD
Trigger: GTCAGTGTGCACTCTGTCTCAAGTATGGGGATGCTG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCTCAAACACTTCAGCTaGCCAAATGGCACAATTGAC +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQLKHFS*PNGTID
Trigger: GTCAATTGTGCCATTTGGTCAGCTGAAGTGTTTGAG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAGTAGTTGGGCACTTTaGTTCGAGCCCCTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARESSWAL*FEPLRR
Trigger: CCTTCTCAGGGGCTCGAATCAAAGTGCCCAACTACT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTGTGAGGGCTGTGACTaGGGTAGACAGGGGCACCCT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGCEGCD*GRQGHP
Trigger: AGGGTGCCCCTGTCTACCTCAGTCACAGCCCTCACA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGAGGCCAGGAAGTTaGACATGTCAAAGGTACACT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESGRPGS*TCQRYT
Trigger: AGTGTACCTTTGACATGTTCAACTTCCTGGCCTCCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGAGAAGTTCAGTCAGTaGCTGCACCATCCGTTCTGT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESEKFSQ*LHHPFC
Trigger: ACAGAACGGATGGTGCAGGCACTGACTGAACTTCTC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGACCAGGTCCCTCCTTaGATTTCCAACTGCCAGCTT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREDQVPP*ISNCQL
Trigger: AAGCTGGCAGTTGGAAATGCAAGGAGGGACCTGGTC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGGTGATGGAGGTGGCTaGGCTTGTGGTTGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRGDGGG*ACGCCG
Trigger: ACCACAGCAACCACAAGCGCAGCCACCTCCATCACC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTTGCGGGGCCGGCTCTaGTCCTCAGGTTCTAGTACT +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRLRGRL*SSGSST
Trigger: AGTACTAGAACCTGAGGAGCAGAGCCGGCCCCGCAA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCGACATCCCAGTTCTTaGCTGGAGTTGCCCCACAGC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRRHPSS*LELPHS
Trigger: GCTGTGGGGCAACTCCAGGCAAGAACTGGGATGTCG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCATCTGCCTTCCACGTaGAACAGCAGCATGGACGTT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREHLPST*NSSMDV
Trigger: AACGTCCATGCTGCTGTTGCACGTGGAAGGCAGATG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTGTCATCCTGGAAGATaGAGTAGCTGGCCCGGGCAC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRCHPGR*SSWPGH
Trigger: GTGCCCGGGCCAGCTACTGCATCTTCCAGGATGACA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAAGGGGTTGGGCTATaGACAATGGTCTGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREEGVGL*TMVWFS
Trigger: GGAGAACCAGACCATTGTGCATAGCCCAACCCCTTC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTGGACCTCCCTGGCTaGTCCCCACTGCCCCAGCAG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLDLPG*SPLPQQ
Trigger: CTGCTGGGGCAGTGGGGAGCAGCCAGGGAGGTCCAG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCTGCTTTACTGGGGGTaGTACAGGCTCACCCTCCCC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGLLYWG*YRLTLP
Trigger: GGGGAGGGTGAGCCTGTAGCACCCCCAGTAAAGCAG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGGGGCTCGACCTCGCTaGGACCGAAGCGCAGAGCGC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRGARPR*DRSAER
Trigger: GCGCTCTGCGCTTCGGTCCCAGCGAGGTCGAGCCCC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAACCGGCTGGCCGTCCTaGGGGCCTTCCCCGAGACCG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLTGWPS*GPSPRP
Trigger: CGGTCTCGGGGAAGGCCCCCAGGACGGCCAGCCGGT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGGTGGTGCTAGGGTTTaGAGTGGGAGAAAGGGTGCC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRGGARV*SGRKGA
Trigger: GGCACCCTTTCTCCCACTCCAAACCCTAGCACCACC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGAAGCCTCCACCTTTaGAGGTTTGGGAGGATCTTC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESRSLHL*RFGRIF
Trigger: GAAGATCCTCCCAAACCTCCAAAGGTGGAGGCTTCT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGCCTCCGGGAGGGAGTaGCAGGGGCAGGTGGTGGAG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRASGRE*QGQVVE
Trigger: CTCCACCACCTGCCCCTGCCACTCCCTCCCGGAGGC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCATCTTCAGGCACCATaGCCCGAGCCTGACCCAAGG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGHLQAP*PEPDPR
Trigger: CCTTGGGTCAGGCTCGGGCCATGGTGCCTGAAGATG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTGTCGCCCCAGCACATaGCCCACACGTGTACAACAC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRCRPST*PTRVQH
Trigger: GTGTTGTACACGTGTGGGCCATGTGCTGGGGCGACA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAGAAGGAGCGAGGGGTaGGAGGAGGGCCATTGCTTG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGRRSEG*EEGHCL
Trigger: CAAGCAATGGCCCTCCTCCCACCCCTCGCTCCTTCT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAACTCCACGGACTGTaGGCGTTTTCATGCGAACAC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREELHGL*AFSCEH
Trigger: GTGTTCGCATGAAAACGCCCACAGTCCGTGGAGTTC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGATGACAGCATCGTGGTaGATGCCCAGGAGCCGCGCT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGMTASW*MPRSRA
Trigger: AGCGCGGCTCCTGGGCATCCACCACGATGCTGTCAT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTGGTGTGTGTTGTGGTaGTGGAGGTGGCTGCGCTTG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGWCVLW*WRWLRL
Trigger: CAAGCGCAGCCACCTCCATCACCACAACACACACCA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGGGAGCCAGCTCCCCTaGGGTAGGTGTGAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRGSQLP*GRCEGC
Trigger: ACAGCCCTCACACCTACCTCAGGGGAGCTGGCTCCC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGGGAGCCAGCTCCCCTaGGGTAGGTGTGAGGGCTGT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGGSQLP*GRCEGC
Trigger: ACAGCCCTCACACCTACCTCAGGGGAGCTGGCTCCC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGCCCACTCCTGGTCCTaGAGGAGGAGTCCCCTGTCC +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRAHSWS*RRSPLS
Trigger: GGACAGGGGACTCCTCCTTCAGGACCAGGAGTGGGC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAGGTGGATACCCTCTTaGCACGAATGGCCTGGCGTG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGRWIPS*HEWPGV
Trigger: CACGCCAGGCCATTCGTGTCAAGAGGGTATCCACCT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGCTCTGCCAGGAAGATaGCAGCATCGTGGTGGATGC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGALPGR*QHRGGC
Trigger: GCATCCACCACGATGCTGTCATCTTCCTGGCAGAGC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGGGTCGTCTTATGCTTaGGGCCCCGACCCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRGSSYA*GPDPEG
Trigger: CCCCTCGGGGTCGGGGCCGCAAGCATAAGACGACCC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCCTAGGCTCAGGCTCTaGTGGAGAGTCATCAGCAGG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGPRLRL*WRVISR
Trigger: CCTGCTGATGACTCTCCAGCAGAGCCTGAGCCTAGG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGGTAGGAGCTGGGTCTaGAAGGCCTGCGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRGRSWV*KACGGC
Trigger: GCAGCCCCCGCAGGCCTTGCAGACCCAGCTCCTACC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCAGGGAACCCAGACTTaGAACACGGGCCTTTTCCAG +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRQGTQT*NTGLFQ
Trigger: CTGGAAAAGGCCCGTGTTGCAAGTCTGGGTTCCCTG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTCAGTGGCGAGGTCCTaGCGATCCCGGAGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSVARS*RSRRGR
Trigger: CCTCCCTCTCCGGGATCGGCAGGACCTCGCCACTGA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGTCAGTGGCGAGGTCCTaGCGATCCCGGAGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGSVARS*RSRRGR
Trigger: CCTCCCTCTCCGGGATCGGCAGGACCTCGCCACTGA...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGTAGGAGGGAGTCCTaGTCCTCGGGCCCGGGAGTG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGSRRES*SSGPGV
Trigger: CACTCCCGGGCCCGAGGAGCAGGACTCCCTCCTACT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGCTGCAGGGTGGGTTTaGGGGGCCGGCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRAAGWV*GAGSAP
Trigger: AGGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTTTCATAGAGCTCGGTaGACCTGGGGCAGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRFHRAR*TWGRGC
Trigger: ACAGCCTCTGCCCCAGGTGCACCGAGCTCTATGAAA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTCCGAGCATCCACTGTaGTCCAATACAGGCGGGAGC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGSEHPL*SNTGGS
Trigger: GCTCCCGCCTGTATTGGAGCACAGTGGATGCTCGGA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCCTCTTCCTTCTCCTTaGCTAGCATCGCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREPLPSP*LASLLP
Trigger: AGGAAGAAGCGATGCTAGCCAAGGAGAAGGAAGAGG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCTCATCTTCTTGCCATaGTGGGATGGCAGTGACCGC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRLIFLP*WDGSDR
Trigger: GCGGTCACTGCCATCCCACCATGGCAAGAAGATGAG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAACGCGTGGCCCGGGTTaGGTAGCTGGGTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRTRGPG*VAGSQA
Trigger: TGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAGGAGTCCTTTCATCTaGCTTCCAGCCCGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGRSPFI*LPARRS
Trigger: AGAGCGCCGGGCTGGAAGCCAGATGAAAGGACTCCT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCTATGCACAATGGTCTaGTTCTCCTCTGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESLCTMV*FSSAAS
Trigger: AGAAGCAGCAGAGGAGAACCAGACCATTGTGCATAG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTTGGGCTATGCACAATaGTCTGGTTCTCCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARELGYAQ*SGSPLL
Trigger: CAGCAGAGGAGAACCAGACCATTGTGCATAGCCCAA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCAGAGAATCTGTATCTaGCAGATCATCATGATTGGG +
Preference number: 4 (lower is better)
Translates to: REPQARVRWQRAREESGQQRICI*QIIMIG
Trigger: CCCAATCATGATGATCTGCCAGATACAGATTCTCTG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGACAGTAGGGATGTGGTaGGTCAGGGAAGATGGACTT +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARETVGMW*VREDGL
Trigger: AAGTCCATCTTCCCTGACCCACCACATCCCTACTGT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGGAGGTCCTCCGGGATaGTGGTGGCCTGGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRGGPPG*WWPGGQ
Trigger: CTGGCCACCAGGCCACCACCATCCCGGAGGACCTCC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTGGATGTGGCAGGTTTaGGGGGTTCTGGAGCAGGAC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGWMWQV*GVLEQD
Trigger: GTCCTGCTCCAGAACCCCCCAAACCTGCCACATCCA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTGGTGGCACGTCTGGTaGACCGAAGCTGCACCTCAT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGWWHVW*TEAAPH
Trigger: ATGAGGTGCAGCTTCGGTCCACCAGACGTGCCACCA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAACCATGGCCCGAGCCTaGCCCAAGGCCACAGCAGCG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLTMARA*PKATAA
Trigger: CGCTGCTGTGGCCTTGGGTCAGGCTCGGGCCATGGT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGACAGCGCACACAGGCTaGACAGATCCAGTGGCGCCG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRTAHTG*TDPVAP
Trigger: CGGCGCCACTGGATCTGTTCAGCCTGTGTGCGCTGT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAGGGTCATCCAGGTGTaGGAAAGCAGCTGGGTCCTT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGRVIQV*ESSWVL
Trigger: AAGGACCCAGCTGCTTTCTCACACCTGGATGACCCT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAGACAGAGTGCACACTaGCGAGGGTCATCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGRQSAH*RGSSRC
Trigger: ACACCTGGATGACCCTCGTCAGTGTGCACTCTGTCT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTGTGGCTCCAGGCTTaGGGCAGAGCTCACAGCGCA +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLWLQA*GRAHSA
Trigger: TGCGCTGTGAGCTCTGCCTCAAGCCTGGAGCCACAG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGAAGTTGCTGAGACATaGGGACAGGCAGCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGEVAET*GQAAAN
Trigger: GTTGGCTGCTGCCTGTCCTCATGTCTCAGCAACTTC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCTTTGGATGTCTTTTTaGGATGACGAAAGCGCATGG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESLWMSF*DDESAW
Trigger: CCATGCGCTTTCGTCATCTCAAAAAGACATCCAAAG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTCAGCACAGAGCGAATaGCAATGCCAGAGTACTCAA +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARESAQSE*QCQSTQ
Trigger: TTGAGTACTCTGGCATTGTCATTCGCTCTGTGCTGA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCAGGGAACCCAGACTTaGAACACGGGCCTTTTCCAG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGQGTQT*NTGLFQ
Trigger: CTGGAAAAGGCCCGTGTTGCAAGTCTGGGTTCCCTG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCTGCAACACAGGCTaGAGGGTGGGTTTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGSCNTG*RVGLRG
Trigger: GCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGATCCCCTGGAGGCTaGCCCGATTCTGGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGSPGG*PDSGVS
Trigger: AGAGACCCCAGAATCGGGGCAGCCTCCAGGGGATCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGGATCCCCTGGAGGCTaGCCCGATTCTGGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGGSPGG*PDSGVS
Trigger: AGAGACCCCAGAATCGGGGCAGCCTCCAGGGGATCC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCACCTCCAAGCTCTCTaGCTCCACACTGAAGCCATC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGHLQAL*LHTEAI
Trigger: GATGGCTTCAGTGTGGAGGCAGAGAGCTTGGAGGTG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCCACTAAAGGAGAGATaGCTGAGCCGTGCATGCCCT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGPLKER*LSRACP
Trigger: AGGGCATGCACGGCTCAGGCATCTCTCCTTTAGTGG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGTCGGGGAGCACACGGTaGTGGGAGGCCAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGSGSTR*WEARKL
Trigger: CAACTTCCTGGCCTCCCAGCACCGTGTGCTCCCCGA...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCTCCCGCATCGATGTTaGGTTTACAAAACAGACCTC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARELPHRC*VYKTDL
Trigger: GAGGTCTGTTTTGTAAACGCAACATCGATGCGGGAG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGGGGTTGGGGTGCTTaGGACCGCCGGAGAAGTTCA +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGGWGA*DRRRSS
Trigger: TGAACTTCTCCGGCGGTCCCAAGCACCCCAACCCCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGGAAGATGGACTTCCTaGAGAGGGCAGAGGACCAAA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRGRWTS*RGQRTK
Trigger: TTTGGTCCTCTGCCCTCTCCAGGAAGTCCATCTTCC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCAATACCCGGACCCCTaGAGCTCCAGGGAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHQYPDP*SSREPS
Trigger: GCTTGGCTCCCTGGAGCTCCAGGGGTCCGGGTATTG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACACTGAGCAGGGGTCCTaGGGGCAGAGTCCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHTEQGS*GQSPGG
Trigger: ACCTCCTGGACTCTGCCCCCAGGACCCCTGCTCAGT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGACTGAGCAGGGGTCCTaGGGGCAGAGTCCAGGAGGT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGTEQGS*GQSPGG
Trigger: ACCTCCTGGACTCTGCCCCCAGGACCCCTGCTCAGT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGAGGTGGCTCTTCCTaGCCCTCTCCCTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRGGSS*PSPCWW
Trigger: CCACCAGCAGGGAGAGGGCCAGGAAGAGCCACCTCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCTTCTGCTGTTGCTGTTaGTCGATCTTGAATAACTGC +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESFCCCC*SILNNC
Trigger: GCAGTTATTCAAGATCGATCAACAGCAACAGCAGAA...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAAGGCCACAGCAGCGTaGCGGCAGACATGTTTGATT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGKATAA*RQTCLI
Trigger: AATCAAACATGTCTGCCGTCACGCTGCTGTGGCCTT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAATGGTGGGATGGCAGTaGCCGCCGTGGTGTGTGGGC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLMVGWQ*PPWCVG
Trigger: GCCCACACACCACGGCGGTCACTGCCATCCCACCAT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCTCGTAGTCTTCATCTaGGAGTCCCTCACACTTGGC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGLVVFI*ESLTLG
Trigger: GCCAAGTGTGAGGGACTCTCAGATGAAGACTACGAG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCTCAAACACTTCAGCTaGCCAAATGGCACAATTGAC +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRARELKHFS*PNGTID
Trigger: GTCAATTGTGCCATTTGGTCAGCTGAAGTGTTTGAG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGGAGGGCCATTGCTTaGATCTGTCCGAAGCGGGGG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRRRAIA*ICPKRG
Trigger: CCCCCGCTTCGGACAGATTCAAGCAATGGCCCTCCT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTTTGATTCGAGCCCCTaGGAAGGAGCGAGGGGTGGG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRFDSSP*EGARGG
Trigger: CCCACCCCTCGCTCCTTCTCAGGGGCTCGAATCAAA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTTTGATTCGAGCCCCTaGGAAGGAGCGAGGGGTGGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHFDSSP*EGARGG
Trigger: CCCACCCCTCGCTCCTTCTCAGGGGCTCGAATCAAA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGCTGAGGGGAAGTTCTaGGAGGAGAGGAGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHAEGKF*EERRSS
Trigger: GGAGGACCTCCTCTCCTCTCAGAACTTCCCCTCAGC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGCTGAGGGGAAGTTCTaGGAGGAGAGGAGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGAEGKF*EERRSS
Trigger: GGAGGACCTCCTCTCCTCTCAGAACTTCCCCTCAGC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTGTGAGGGCTGTGACTaGGGTAGACAGGGGCACCCT +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRCEGCD*GRQGHP
Trigger: AGGGTGCCCCTGTCTACCTCAGTCACAGCCCTCACA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCGGATTCCCCGTCACTaGTCTCTTCCTCCGGCATGC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRIPRH*SLPPAC
Trigger: GCATGCCGGAGGAAGAGAGCAGTGACGGGGAATCCG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGCACCATCCGTTCTGTaGCCTCCTCACCCCGTTTCC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHAPSVL*PPHPVS
Trigger: GGAAACGGGGTGAGGAGGGCACAGAACGGATGGTGC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGCAGCTTCCCTCTCTaGCCGCTGGCTAGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHSSFPL*PLARSQ
Trigger: CTGACTCCTAGCCAGCGGGCAGAGAGGGAAGCTGCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAATTGGTCCGCCCCACTaGCCTAGGCTCAGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRIGPPH*PRLRLC
Trigger: GCAGAGCCTGAGCCTAGGGCAGTGGGGCGGACCAAT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCGGTATACACAGCACTaGTTCTTAGTGTTGGGACCC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRRYTQH*FLVLGP
Trigger: GGGTCCCAACACTAAGAAGCAGTGCTGTGTATACCG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGTAGGAGGGAGTCCTaGTCCTCGGGCCCGGGAGTG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSRRES*SSGPGV
Trigger: CACTCCCGGGCCCGAGGAGCAGGACTCCCTCCTACT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGCTGCAACACAGGCTaGAGGGTGGGTTTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSCNTG*RVGLRG
Trigger: GCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTTCGGGCCTTGAGCTaGAACACAGGCTGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLRALS*NTGCRV
Trigger: CACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCATCTGCCTTCCACGTaGAACAGCAGCATGGACGTT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGHLPST*NSSMDV
Trigger: AACGTCCATGCTGCTGTTGCACGTGGAAGGCAGATG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCATCTTCACAAATACTTaGCCCAGCTTGTTGACAAGG +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESIFTNT*PSLLTR
Trigger: CCTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGAT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGAGGCTCACCCTCCCCTaGCATCTTCACAAATACTTG +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRRLTLP*HLHKYL
Trigger: CAAGTATTTGTGAAGATGGCAGGGGAGGGTGAGCCT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGAATCAGAGTTCTCCATaGCACCTCCAAGCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRNQSSP*HLQALC
Trigger: GCAGAGAGCTTGGAGGTGGCATGGAGAACTCTGATT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCCGAGTAGGGGCCTTTaGGGGGACAGGAGTCACATC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGPSRGL*GDRSHI
Trigger: GATGTGACTCCTGTCCCCCCAAAGGCCCCTACTCGG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCCTAGAGCATGTAGCTaGGACAAGAGGAGGAGACTC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGPRACS*DKRRRL
Trigger: GAGTCTCCTCCTCTTGTCCCAGCTACATGCTCTAGG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATCCCTCTCTGCCCGCTaGCTAGGAGTCAGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSLSAR*LGVRGG
Trigger: GCCTCCCCTGACTCCTAGCCAGCGGGCAGAGAGGGA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGTGTGGTGGTAGTGCCTaGGGTAGGAGCTGGGTCTGC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGCGGSA*GRSWVC
Trigger: GCAGACCCAGCTCCTACCCCAGGCACTACCACCACA...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCATCTTCAGGCACCATaGCCCGAGCCTGACCCAAGG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGHLQAP*PEPDPR
Trigger: CCTTGGGTCAGGCTCGGGCCATGGTGCCTGAAGATG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCATCTTCAGGCACCATaGCCCGAGCCTGACCCAAGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHHLQAP*PEPDPR
Trigger: CCTTGGGTCAGGCTCGGGCCATGGTGCCTGAAGATG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGTCACAGGGTCCTGGGTaGAGCTGCTTCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGSQGPG*SCFPSC
Trigger: GCAGGATGGGAAGCAGCTCCACCCAGGACCCTGTGA...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGACATGGTCCAAGGATaGAGGCAACACAGCATTGGG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGDMVQG*RQHSIG
Trigger: CCCAATGCTGTGTTGCCTCCATCCTTGGACCATGTC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCGGGCACACATGAAGTaGAAGTTGCTGAGACATGAG +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRRAHMK*KLLRHE
Trigger: CTCATGTCTCAGCAACTTCCACTTCATGTGTGCCCG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGAAGGAGCGAGGGGTaGGAGGAGGGCCATTGCTTG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGRRSEG*EEGHCL
Trigger: CAAGCAATGGCCCTCCTCCCACCCCTCGCTCCTTCT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGACAGTAGGGATGTGGTaGGTCAGGGAAGATGGACTT +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRTVGMW*VREDGL
Trigger: AAGTCCATCTTCCCTGACCCACCACATCCCTACTGT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCAGTCCCCAGCAGGCTaGCTGCAAAGTCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRQSPAG*LQSPGQ
Trigger: CTGACCTGGACTTTGCAGCCAGCCTGCTGGGGACTG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCAGTCCCCAGCAGGCTaGCTGCAAAGTCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGQSPAG*LQSPGQ
Trigger: CTGACCTGGACTTTGCAGCCAGCCTGCTGGGGACTG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTCGGGTGGGGTCAGCTaGGCTAGTGGACAGGCTTTG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHSGGVS*ASGQAL
Trigger: CAAAGCCTGTCCACTAGCCCAGCTGACCCCACCCGA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTTTGTCCTCTGGAGATaGAGGCTCTTCCTCAGAGCT +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRFVLWR*RLFLRA
Trigger: AGCTCTGAGGAAGAGCCTCCATCTCCAGAGGACAAA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGCACGAGCAGCCCCATaGGGATTCAGAGGTGGCTCT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHARAAP*GFRGGS
Trigger: AGAGCCACCTCTGAATCCCCATGGGGCTGCTCGTGC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGCACGAGCAGCCCCATaGGGATTCAGAGGTGGCTCT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGARAAP*GFRGGS
Trigger: AGAGCCACCTCTGAATCCCCATGGGGCTGCTCGTGC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGAAGCTCCAGGCTGGTaGCACGTCTGGTGGACCGAA +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGEAPGW*HVWWTE
Trigger: TTCGGTCCACCAGACGTGCCACCAGCCTGGAGCTTC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTTGGGCTCACATGAGTaGTTGATGAATCGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRLGSHE*LMNRAA
Trigger: TGCTGCCCGATTCATCAACCACTCATGTGAGCCCAA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTGGTGTGTGTTGTGGTaGTGGAGGTGGCTGCGCTTG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHWCVLW*WRWLRL
Trigger: CAAGCGCAGCCACCTCCATCACCACAACACACACCA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAACAGCGCACACAGGCTaGACAGATCCAGTGGCGCCG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLTAHTG*TDPVAP
Trigger: CGGCGCCACTGGATCTGTTCAGCCTGTGTGCGCTGT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGACACGTGTACAACACTaGGTCTGGCAGTCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGTRVQH*VWQSRK
Trigger: CTTTCTGGACTGCCAGACTCAGTGTTGTACACGTGT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACTGTGGCTCCAGGCTTaGGGCAGAGCTCACAGCGCA +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLLWLQA*GRAHSA
Trigger: TGCGCTGTGAGCTCTGCCTCAAGCCTGGAGCCACAG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGGGGCACCCTGAGCTaGGGGGAAGTTCTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRRGTLS*GEVLRG
Trigger: TCCTCTCAGAACTTCCCCTCAGCTCAGGGTGCCCCT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGGTGGATACCCTCTTaGCACGAATGGCCTGGCGTG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRRWIPS*HEWPGV
Trigger: CACGCCAGGCCATTCGTGTCAAGAGGGTATCCACCT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGCTCTGCCAGGAAGATaGCAGCATCGTGGTGGATGC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGALPGR*QHRGGC
Trigger: GCATCCACCACGATGCTGTCATCTTCCTGGCAGAGC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTCAGCACAGAGCGAATaGCAATGCCAGAGTACTCAA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRSAQSE*QCQSTQ
Trigger: TTGAGTACTCTGGCATTGTCATTCGCTCTGTGCTGA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGGTCGTCTTATGCTTaGGGCCCCGACCCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGSSYA*GPDPEG
Trigger: CCCCTCGGGGTCGGGGCCGCAAGCATAAGACGACCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCCTAGGCTCAGGCTCTaGTGGAGAGTCATCAGCAGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHPRLRL*WRVISR
Trigger: CCTGCTGATGACTCTCCAGCAGAGCCTGAGCCTAGG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCGGTATACACAGCACTaGTTCTTAGTGTTGGGACCC +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGRYTQH*FLVLGP
Trigger: GGGTCCCAACACTAAGAAGCAGTGCTGTGTATACCG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGCTGCAGGGTGGGTTTaGGGGGCCGGCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKAAGWV*GAGSAP
Trigger: AGGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGCTGCAACACAGGCTaGAGGGTGGGTTTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSCNTG*RVGLRG
Trigger: GCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGCTGCTTCCCATCCTaGCCACACTGGGTGCACAGC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSCFPS*PHWVHS
Trigger: GCTGTGCACCCAGTGTGGGCAGGATGGGAAGCAGCT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGATCTTCACAAATACTTaGCCCAGCTTGTTGACAAGG +
Preference number: 4 (lower is better)
Translates to: DTETREPQARVRWQRAREIFTNT*PSLLTR
Trigger: CCTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGAT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGGCTCAGGCTCTGCTaGAGAGTCATCAGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRRLRLC*RVISRR
Trigger: CCTCCTGCTGATGACTCTCCAGCAGAGCCTGAGCCT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTCAGGCTCTGCTaGAGAGTCATCAGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRLRLC*RVISRR
Trigger: CCTCCTGCTGATGACTCTCCAGCAGAGCCTGAGCCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACATGACGTATCCTCAGTaGCGAGGTCCTGCCGATCCC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHMTYPQ*RGPADP
Trigger: GGGATCGGCAGGACCTCGCCACTGAGGATACGTCAT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATCACAGGGTCCTGGGTaGAGCTGCTTCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSQGPG*SCFPSC
Trigger: GCAGGATGGGAAGCAGCTCCACCCAGGACCCTGTGA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGGAGTCCTTTCATCTaGCTTCCAGCCCGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGRSPFI*LPARRS
Trigger: AGAGCGCCGGGCTGGAAGCCAGATGAAAGGACTCCT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACACTGGCTCCTCCCTTaGCCCCCAAGGGCGATACTC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLHWLLP*PPRAIL
Trigger: GAGTATCGCCCTTGGGGGCCAAGGGAGGAGCCAGTG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGTGGGTCAGGGAAGATaGACTTCCTGGAGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRVGQGR*TSWRGQ
Trigger: CTGCCCTCTCCAGGAAGTCCATCTTCCCTGACCCAC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGTGGGTCAGGGAAGATaGACTTCCTGGAGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHVGQGR*TSWRGQ
Trigger: CTGCCCTCTCCAGGAAGTCCATCTTCCCTGACCCAC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATCGCCTTGGGGGAGCTaGAAAGTCCGAGTCTCCCAC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSPWGS*KVRVSH
Trigger: GTGGGAGACTCGGACTTTCCAGCTCCCCCAAGGCGA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAACGCCGAGATCGCCTTaGGGGAGCTGGAAAGTCCGA +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRTPRSP*GSWKVR
Trigger: TCGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGAGGTCCTCCGGGATaGTGGTGGCCTGGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGGPPG*WWPGGQ
Trigger: CTGGCCACCAGGCCACCACCATCCCGGAGGACCTCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGGTCTTCAGGAGGTTaGGCTCTGTCGCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRRSSGG*ALSPAA
Trigger: AGCAGCAGGCGACAGAGCCCAACCTCCTGAAGACCT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATCGGGTGGGGTCAGCTaGGCTAGTGGACAGGCTTTG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSGGVS*ASGQAL
Trigger: CAAAGCCTGTCCACTAGCCCAGCTGACCCCACCCGA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGTTTTCTTTGTCCTCTaGAGATGGAGGCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRVFFVL*RWRLFL
Trigger: GAGGAAGAGCCTCCATCTCCAGAGGACAAAGAAAAC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAAGATGACAGCATCGTaGTGGATGCCCAGGAGCCGC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGKMTAS*WMPRSR
Trigger: GCGGCTCCTGGGCATCCACCACGATGCTGTCATCTT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACATGGGGATTCAGAGGTaGCTCTTCCTGGCCCTCTCC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHMGIQR*LFLALS
Trigger: GGAGAGGGCCAGGAAGAGCCACCTCTGAATCCCCAT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGCACGAGCAGCCCCATaGGGATTCAGAGGTGGCTCT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRARAAP*GFRGGS
Trigger: AGAGCCACCTCTGAATCCCCATGGGGCTGCTCGTGC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTGGTGGCACGTCTGGTaGACCGAAGCTGCACCTCAT +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRWWHVW*TEAAPH
Trigger: ATGAGGTGCAGCTTCGGTCCACCAGACGTGCCACCA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGAAGTTGCTGAGACATaGGGACAGGCAGCAGCCAAC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHEVAET*GQAAAN
Trigger: GTTGGCTGCTGCCTGTCCTCATGTCTCAGCAACTTC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGGGGATCCAGATTCTaGATGGGGGAGTGGTGTACA +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGGSRF*MGEWCT
Trigger: TGTACACCACTCCCCCATTCAGAATCTGGATCCCCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGGAGGGCCATTGCTTaGATCTGTCCGAAGCGGGGG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRRAIA*ICPKRG
Trigger: CCCCCGCTTCGGACAGATTCAAGCAATGGCCCTCCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGGGGCACCCTGAGCTaGGGGGAAGTTCTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRGTLS*GEVLRG
Trigger: TCCTCTCAGAACTTCCCCTCAGCTCAGGGTGCCCCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGCCAAGGGAGGTGCTaGAGGAAGAGAGTCCTCTCT +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSQGRC*RKRVLS
Trigger: AGAGAGGACTCTCTTCCTTCAGCACCTCCCTTGGCT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGCCAAGGGAGGTGCTaGAGGAAGAGAGTCCTCTCT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHSQGRC*RKRVLS
Trigger: AGAGAGGACTCTCTTCCTTCAGCACCTCCCTTGGCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGCCTTCCACATGGATaGCACGAGAGAAGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGLPHG*HERSSW
Trigger: CCAACTGCTTCTCTCGTGTCATCCATGTGGAAGGCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCTCGATCTTGAATAACTaGACCTTAGCTCTCTTAAGA +
Preference number: 4 (lower is better)
Translates to: ETREPQARVRWQRAREESSILNN*TLALLR
Trigger: TCTTAAGAGAGCTAAGGTGCAGTTATTCAAGATCGA...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGTCAGTGGCGAGGTCCTaGCGATCCCGGAGAGGGAGG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKSVARS*RSRRGR
Trigger: CCTCCCTCTCCGGGATCGGCAGGACCTCGCCACTGA...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACTTCGGGCCTTGAGCTaGAACACAGGCTGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLLRALS*NTGCRV
Trigger: CACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGAACTTGCAGCGCCTaGAGCACCAGGTGTCACGAT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRTCSA*STRCHD
Trigger: ATCGTGACACCTGGTGCTGCAGGCGCTGCAAGTTCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAAACATGGCAGAACTTaGAGCGCCTGCAGCACCAGG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRKHGRT*SACSTR
Trigger: CCTGGTGCTGCAGGCGCTGCAAGTTCTGCCATGTTT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAAACATGGCAGAACTTaGAGCGCCTGCAGCACCAGG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGKHGRT*SACSTR
Trigger: CCTGGTGCTGCAGGCGCTGCAAGTTCTGCCATGTTT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGTTTCATAGAGCTCGGTaGACCTGGGGCAGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGFHRAR*TWGRGC
Trigger: ACAGCCTCTGCCCCAGGTGCACCGAGCTCTATGAAA...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGCTGCTTCCCATCCTaGCCACACTGGGTGCACAGC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSCFPS*PHWVHS
Trigger: GCTGTGCACCCAGTGTGGGCAGGATGGGAAGCAGCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCTGGACCTCCCTGGCTaGTCCCCACTGCCCCAGCAG +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGLDLPG*SPLPQQ
Trigger: CTGCTGGGGCAGTGGGGAGCAGCCAGGGAGGTCCAG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCCACTAAAGGAGAGATaGCTGAGCCGTGCATGCCCT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHPLKER*LSRACP
Trigger: AGGGCATGCACGGCTCAGGCATCTCTCCTTTAGTGG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGCTGTCCTCCACGTTTaGGGGTTCCAGGTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLAVLHV*GFQVLD
Trigger: GTCCAGGACCTGGAACCCCCAAACGTGGAGGACAGC...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTCTTCCTGCTTCTCTaGGGCTGGATATGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRLFLLL*GWIWGR
Trigger: CCTCCCCCATATCCAGCCCCAGAGAAGCAGGAAGAG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAATGACGTATCCTCAGTaGCGAGGTCCTGCCGATCCC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRMTYPQ*RGPADP
Trigger: GGGATCGGCAGGACCTCGCCACTGAGGATACGTCAT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCTCATCTTCTTGCCATaGTGGGATGGCAGTGACCGC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGLIFLP*WDGSDR
Trigger: GCGGTCACTGCCATCCCACCATGGCAAGAAGATGAG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGACGCGTGGCCCGGGTTaGGTAGCTGGGTCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGTRGPG*VAGSQA
Trigger: TGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTTGGCATGCACCCAGTaGTCACACTGTGCACACTGC +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLACTQ*SHCAHC
Trigger: GCAGTGTGCACAGTGTGACCACTGGGTGCATGCCAA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGAGTCCCTCACACTTaGCATGCACCCAGTGGTCAC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRVPHT*HAPSGH
Trigger: GTGACCACTGGGTGCATGCCAAGTGTGAGGGACTCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATGTCGCCCCAGCACATaGCCCACACGTGTACAACAC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRCRPST*PTRVQH
Trigger: GTGTTGTACACGTGTGGGCCATGTGCTGGGGCGACA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGCTGGGTCCTTGCTCTaGAAAGCTGCTGAAGGATCC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHAGSLL*KAAEGS
Trigger: GGATCCTTCAGCAGCTTTCCAGAGCAAGGACCCAGC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCGTGCAACAGCAGCATaGACGTTCTTGAGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRATAA*TFLREP
Trigger: TGGCTCCCTCAAGAACGTCCATGCTGCTGTTGCACG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCGTGCAACAGCAGCATaGACGTTCTTGAGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGRATAA*TFLREP
Trigger: TGGCTCCCTCAAGAACGTCCATGCTGCTGTTGCACG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGCAGATCATCATGATTaGGGGGCTCTGAGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHADHHD*GALRKG
Trigger: CCCCTTCCTCAGAGCCCCCCAATCATGATGATCTGC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGGAGCTTCTGCAAGTaGCAGCAAAGGACACCGGTC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGRSFCK*QQRTPV
Trigger: GACCGGTGTCCTTTGCTGCCACTTGCAGAAGCTCCT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGGAGCTTCTGCAAGTaGCAGCAAAGGACACCGGTC +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRRSFCK*QQRTPV
Trigger: GACCGGTGTCCTTTGCTGCCACTTGCAGAAGCTCCT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTTCTTCATCACAGGTaGCTCCCTCGGGGAGCACAC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRLLHHR*LPRGAH
Trigger: GTGTGCTCCCCGAGGGAGCCACCTGTGATGAAGAAG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCAGCATTGCCGTGCATaGTGGCGTCCACCACATCAA +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHQHCRA*WRPPHQ
Trigger: TTGATGTGGTGGACGCCACCATGCACGGCAATGCTG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGGTGCCCTCTGGTCCTaGCCGAGCAGCTTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGGALWS*PSSFPL
Trigger: GAGAGGGAAGCTGCTCGGTCAGGACCAGAGGGCACC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATGGTGTGTGTTGTGGTaGTGGAGGTGGCTGCGCTTG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLWCVLW*WRWLRL
Trigger: CAAGCGCAGCCACCTCCATCACCACAACACACACCA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTTCTGCTGTTGCTGTTaGTCGATCTTGAATAACTGC +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRFCCCC*SILNNC
Trigger: GCAGTTATTCAAGATCGATCAACAGCAACAGCAGAA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGGCGCCTTCGGGCCTTaGGCTGCAACACAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGGAFGP*AATQAA
Trigger: TGCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCGATTCTGGGGTCTCTaGTTCCTGTTGTCTCCACTG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRRFWGL*FLLSPL
Trigger: CAGTGGAGACAACAGGAATCAGAGACCCCAGAATCG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGGGTCATCCAGGTGTaGGAAAGCAGCTGGGTCCTT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRRVIQV*ESSWVL
Trigger: AAGGACCCAGCTGCTTTCTCACACCTGGATGACCCT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGTAGTTGGGCACTTTaGTTCGAGCCCCTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSSWAL*FEPLRR
Trigger: CCTTCTCAGGGGCTCGAATCAAAGTGCCCAACTACT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCCTCCGAGACGGTaGGTAGTTGGGCACTTTGAT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLGPPRR*VVGHFD
Trigger: ATCAAAGTGCCCAACTACTCACCGTCTCGGAGGCCC...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCCACTGGTAACACACTaGGCAGGGGTCCTGGGGGCA +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKPLVTH*AGVLGA
Trigger: TGCCCCCAGGACCCCTGCTCAGTGTGTTACCAGTGG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGGTGGATACCCTCTTaGCACGAATGGCCTGGCGTG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRWIPS*HEWPGV
Trigger: CACGCCAGGCCATTCGTGTCAAGAGGGTATCCACCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACTGATCCCTGGCACATaGTGGGCATCCTCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLLIPGT*WASSKD
Trigger: GTCCTTGGAGGATGCCCATCATGTGCCAGGGATCAG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTGCCAGAGTACTCAATaGCCATCTCTCCCGCATCGA +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRCQSTQ*PSLPHR
Trigger: TCGATGCGGGAGAGATGGTCATTGAGTACTCTGGCA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGTGCCAGAGTACTCAATaGCCATCTCTCCCGCATCGA +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGCQSTQ*PSLPHR
Trigger: TCGATGCGGGAGAGATGGTCATTGAGTACTCTGGCA...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAACACTACTGCTTGCTaGTTTTTCCGGCAGGGACCG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGNTTAC*FFRQGP
Trigger: CGGTCCCTGCCGGAAAAAGCAGCAAGCAGTAGTGTT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGCAGGTGGGGAGGTTaGAACAGGAGGTCGAACAAT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHSRWGG*NRRSNN
Trigger: ATTGTTCGACCTCCTGTTGCAACCTCCCCACCTGCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACAGGGAACCCAGACTTaGAACACGGGCCTTTTCCAG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRQGTQT*NTGLFQ
Trigger: CTGGAAAAGGCCCGTGTTGCAAGTCTGGGTTCCCTG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGAACTTGCAGCGCCTaGAGCACCAGGTGTCACGAT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRRTCSA*STRCHD
Trigger: ATCGTGACACCTGGTGCTGCAGGCGCTGCAAGTTCT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCCTGCCCACACTGGGTaGACAGCAGCAATGGGCCTG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKPAHTG*TAAMGL
Trigger: CAGGCCCATTGCTGCTGTGCACCCAGTGTGGGCAGG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACACCTCCAAGCTCTCTaGCTCCACACTGAAGCCATC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRHLQAL*LHTEAI
Trigger: GATGGCTTCAGTGTGGAGGCAGAGAGCTTGGAGGTG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACAGAGCGCAGGGAACTaGGGGCCACATCTTCATCTG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLQSAGN*GPHLHL
Trigger: CAGATGAAGATGTGGCCCCCAGTTCCCTGCGCTCTG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGGGGTTCCAGGTCCTaGACCAGGTCCCTCCTTGCA +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGGSRS*TRSLLA
Trigger: TGCAAGGAGGGACCTGGTCCAGGACCTGGAACCCCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAATCTTCTTGCCATGGTaGGATGGCAGTGACCGCCGT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRIFLPW*DGSDRR
Trigger: ACGGCGGTCACTGCCATCCCACCATGGCAAGAAGAT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTTCCAGTCCAGCCATTaGGAAAAGAGGCAAAGGGGC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHFQSSH*EKRQRG
Trigger: GCCCCTTTGCCTCTTTTCCCAATGGCTGGACTGGAA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGAGCTCGGTGCACCTaGGGCAGAGGCTGTAATCTC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRARCT*GRGCNL
Trigger: GAGATTACAGCCTCTGCCCCAGGTGCACCGAGCTCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGGAGTCCTTTCATCTaGCTTCCAGCCCGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRSPFI*LPARRS
Trigger: AGAGCGCCGGGCTGGAAGCCAGATGAAAGGACTCCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACGTGCAACAGCAGCATaGACGTTCTTGAGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRRATAA*TFLREP
Trigger: TGGCTCCCTCAAGAACGTCCATGCTGCTGTTGCACG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGCATTGGTAGCCAATaGGGAAGAGTCGACCCTCAC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHSIGSQ*GRVDPH
Trigger: GTGAGGGTCGACTCTTCCCCATTGGCTACCAATGCT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCACTGGCTCCTCCCTTaGCCCCCAAGGGCGATACTC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKHWLLP*PPRAIL
Trigger: GAGTATCGCCCTTGGGGGCCAAGGGAGGAGCCAGTG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCAGAGAATCTGTATCTaGCAGATCATCATGATTGGG +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRQRICI*QIIMIG
Trigger: CCCAATCATGATGATCTGCCAGATACAGATTCTCTG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGGAAGATGGACTTCCTaGAGAGGGCAGAGGACCAAA +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRGRWTS*RGQRTK
Trigger: TTTGGTCCTCTGCCCTCTCCAGGAAGTCCATCTTCC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGTGGGTCAGGGAAGATaGACTTCCTGGAGAGGGCAG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLVGQGR*TSWRGQ
Trigger: CTGCCCTCTCCAGGAAGTCCATCTTCCCTGACCCAC...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGAGAGGTGGCTCTTCCTaGCCCTCTCCCTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKRGGSS*PSPCWW
Trigger: CCACCAGCAGGGAGAGGGCCAGGAAGAGCCACCTCT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGACGGCAGACATGTTTaGTTCGGGGGCCTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRDGRHV*FGGLVK
Trigger: CTTTACAAGGCCCCCGAATCAAACATGTCTGCCGTC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAAGGCCACAGCAGCGTaGCGGCAGACATGTTTGATT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRKATAA*RQTCLI
Trigger: AATCAAACATGTCTGCCGTCACGCTGCTGTGGCCTT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGACAGAGTGCACACTaGCGAGGGTCATCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRQSAH*RGSSRC
Trigger: ACACCTGGATGACCCTCGTCAGTGTGCACTCTGTCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGTGTGAGGGCTGTGACTaGGGTAGACAGGGGCACCCT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKCEGCD*GRQGHP
Trigger: AGGGTGCCCCTGTCTACCTCAGTCACAGCCCTCACA...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGGAGGCCAGGAAGTTaGACATGTCAAAGGTACACT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGRPGS*TCQRYT
Trigger: AGTGTACCTTTGACATGTTCAACTTCCTGGCCTCCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGCACCATCCGTTCTGTaGCCTCCTCACCCCGTTTCC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKAPSVL*PPHPVS
Trigger: GGAAACGGGGTGAGGAGGGCACAGAACGGATGGTGC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGAGAAGTTCAGTCAGTaGCTGCACCATCCGTTCTGT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGEKFSQ*LHHPFC
Trigger: ACAGAACGGATGGTGCAGGCACTGACTGAACTTCTC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAACACTACTGCTTGCTaGTTTTTCCGGCAGGGACCG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRNTTAC*FFRQGP
Trigger: CGGTCCCTGCCGGAAAAAGCAGCAAGCAGTAGTGTT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCCATTCTCATCTTCTTaGCATGGTGGGATGGCAGTG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHPFSSS*HGGMAV
Trigger: CACTGCCATCCCACCATGGCAAGAAGATGAGAATGG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCATTCTCATCTTCTTaGCATGGTGGGATGGCAGTG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRPFSSS*HGGMAV
Trigger: CACTGCCATCCCACCATGGCAAGAAGATGAGAATGG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCCATTCTCATCTTCTTaGCATGGTGGGATGGCAGTG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGPFSSS*HGGMAV
Trigger: CACTGCCATCCCACCATGGCAAGAAGATGAGAATGG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCGGTATACACAGCACTaGTTCTTAGTGTTGGGACCC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRYTQH*FLVLGP
Trigger: GGGTCCCAACACTAAGAAGCAGTGCTGTGTATACCG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGAACTTGCAGCGCCTaGAGCACCAGGTGTCACGAT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRTCSA*STRCHD
Trigger: ATCGTGACACCTGGTGCTGCAGGCGCTGCAAGTTCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAAACATGGCAGAACTTaGAGCGCCTGCAGCACCAGG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLKHGRT*SACSTR
Trigger: CCTGGTGCTGCAGGCGCTGCAAGTTCTGCCATGTTT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATTTCATAGAGCTCGGTaGACCTGGGGCAGAGGCTGT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLFHRAR*TWGRGC
Trigger: ACAGCCTCTGCCCCAGGTGCACCGAGCTCTATGAAA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAATCAGAGTTCTCCATaGCACCTCCAAGCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRNQSSP*HLQALC
Trigger: GCAGAGAGCTTGGAGGTGGCATGGAGAACTCTGATT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCCGTGCATGCCCTCGTaGTTCTTGCACTTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHPCMPS*FLHFLN
Trigger: ATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGCTGTCCTCCACGTTTaGGGGTTCCAGGTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKAVLHV*GFQVLD
Trigger: GTCCAGGACCTGGAACCCCCAAACGTGGAGGACAGC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCCTCTTCCTTCTCCTTaGCTAGCATCGCTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHPLPSP*LASLLP
Trigger: AGGAAGAAGCGATGCTAGCCAAGGAGAAGGAAGAGG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAATCTTCTTGCCATGGTaGGATGGCAGTGACCGCCGT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLIFLPW*DGSDRR
Trigger: ACGGCGGTCACTGCCATCCCACCATGGCAAGAAGAT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATTCCAGTCCAGCCATTaGGAAAAGAGGCAAAGGGGC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRFQSSH*EKRQRG
Trigger: GCCCCTTTGCCTCTTTTCCCAATGGCTGGACTGGAA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGACATGGTCCAAGGATaGAGGCAACACAGCATTGGG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRDMVQG*RQHSIG
Trigger: CCCAATGCTGTGTTGCCTCCATCCTTGGACCATGTC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCGGGCACACATGAAGTaGAAGTTGCTGAGACATGAG +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGRAHMK*KLLRHE
Trigger: CTCATGTCTCAGCAACTTCCACTTCATGTGTGCCCG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCGGGCACACATGAAGTaGAAGTTGCTGAGACATGAG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHRAHMK*KLLRHE
Trigger: CTCATGTCTCAGCAACTTCCACTTCATGTGTGCCCG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCACTGGCTCCTCCCTTaGCCCCCAAGGGCGATACTC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGHWLLP*PPRAIL
Trigger: GAGTATCGCCCTTGGGGGCCAAGGGAGGAGCCAGTG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTTGGGCTATGCACAATaGTCTGGTTCTCCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHLGYAQ*SGSPLL
Trigger: CAGCAGAGGAGAACCAGACCATTGTGCATAGCCCAA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGAACTCCACGGACTGTaGGCGTTTTCATGCGAACAC +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRELHGL*AFSCEH
Trigger: GTGTTCGCATGAAAACGCCCACAGTCCGTGGAGTTC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTTTGTCCTCTGGAGATaGAGGCTCTTCCTCAGAGCT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHFVLWR*RLFLRA
Trigger: AGCTCTGAGGAAGAGCCTCCATCTCCAGAGGACAAA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGTTTGTCCTCTGGAGATaGAGGCTCTTCCTCAGAGCT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGFVLWR*RLFLRA
Trigger: AGCTCTGAGGAAGAGCCTCCATCTCCAGAGGACAAA...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGTGGACCAACCCGTTTaGGGACCTGGTTTTCTTTGT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHVDQPV*GPGFLC
Trigger: ACAAAGAAAACCAGGTCCCCAAACGGGTTGGTCCAC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTTGGGCTCACATGAGTaGTTGATGAATCGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLGSHE*LMNRAA
Trigger: TGCTGCCCGATTCATCAACCACTCATGTGAGCCCAA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGATGACAATGTGTTTCTaGCCTTCCACATGGATGACA +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGMTMCF*PSTWMT
Trigger: TGTCATCCATGTGGAAGGCCAGAAACACATTGTCAT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACGATTCTGGGGTCTCTaGTTCCTGTTGTCTCCACTG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRFWGL*FLLSPL
Trigger: CAGTGGAGACAACAGGAATCAGAGACCCCAGAATCG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACAGCATCCCCATACTTaGGACAGAGTGCACACTGAC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLQHPHT*DRVHTD
Trigger: GTCAGTGTGCACTCTGTCTCAAGTATGGGGATGCTG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGTTTGATTCGAGCCCCTaGGAAGGAGCGAGGGGTGGG +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGFDSSP*EGARGG
Trigger: CCCACCCCTCGCTCCTTCTCAGGGGCTCGAATCAAA...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGGCCTCCGAGACGGTaGGTAGTTGGGCACTTTGAT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGPPRR*VVGHFD
Trigger: ATCAAAGTGCCCAACTACTCACCGTCTCGGAGGCCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGCTGAGGGGAAGTTCTaGGAGGAGAGGAGGTCCTCC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGAEGKF*EERRSS
Trigger: GGAGGACCTCCTCTCCTCTCAGAACTTCCCCTCAGC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTCAGCACAGAGCGAATaGCAATGCCAGAGTACTCAA +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSAQSE*QCQSTQ
Trigger: TTGAGTACTCTGGCATTGTCATTCGCTCTGTGCTGA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGGCGCAAGGCAAAGATaGCAATGTGTTTCTGGCCTT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRGARQR*QCVSGL
Trigger: AAGGCCAGAAACACATTGTCATCTTTGCCTTGCGCC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACAGAGAATCTGTATCTaGGGAAGGGGTTGGGCTATG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRQRICI*GRGWAM
Trigger: CATAGCCCAACCCCTTCCTCAGATACAGATTCTCTG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGCAGGTGGGGAGGTTaGAACAGGAGGTCGAACAAT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSRWGG*NRRSNN
Trigger: ATTGTTCGACCTCCTGTTGCAACCTCCCCACCTGCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGTTGCGGGGCCGGCTCTaGTCCTCAGGTTCTAGTACT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKLRGRL*SSGSST
Trigger: AGTACTAGAACCTGAGGAGCAGAGCCGGCCCCGCAA...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCGACATCCCAGTTCTTaGCTGGAGTTGCCCCACAGC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKRHPSS*LELPHS
Trigger: GCTGTGGGGCAACTCCAGGCAAGAACTGGGATGTCG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTTCATAGCAGCGTGTaGAAATTGGGCAGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLHSSV*KLGSSS
Trigger: GGAACTACTGCCCAATTTGCACACGCTGCTATGAAG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCACACTGCATCATCTTaGTCTCATAGTCATTGTCTT +
Preference number: 4 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGHTASS*SHSHCL
Trigger: AAGACAATGACTATGAGAGCAAGATGATGCAGTGTG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACCAGTGGTCACACTGTaGACACTGCATCATCTTGCT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRPVVTL*TLHHLA
Trigger: AGCAAGATGATGCAGTGTGCACAGTGTGACCACTGG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGAAGGGGTTGGGCTATaGACAATGGTCTGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLEGVGL*TMVWFS
Trigger: GGAGAACCAGACCATTGTGCATAGCCCAACCCCTTC...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCTGCTTTACTGGGGGTaGTACAGGCTCACCCTCCCC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGLLYWG*YRLTLP
Trigger: GGGGAGGGTGAGCCTGTAGCACCCCCAGTAAAGCAG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTCCCGCATCGATGTTaGGTTTACAAAACAGACCTC +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLPHRC*VYKTDL
Trigger: GAGGTCTGTTTTGTAAACGCAACATCGATGCGGGAG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCTCCCGCATCGATGTTaGGTTTACAAAACAGACCTC +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHLPHRC*VYKTDL
Trigger: GAGGTCTGTTTTGTAAACGCAACATCGATGCGGGAG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGATGACGTATCCTCAGTaGCGAGGTCCTGCCGATCCC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKMTYPQ*RGPADP
Trigger: GGGATCGGCAGGACCTCGCCACTGAGGATACGTCAT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATCCAGACAGAAGGGGTaGAAAGGATCGCAGCAGACT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSRQKG*KGSQQT
Trigger: AGTCTGCTGCGATCCTTTCCACCCCTTCTGTCTGGA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGTCACAGGGTCCTGGGTaGAGCTGCTTCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGSQGPG*SCFPSC
Trigger: GCAGGATGGGAAGCAGCTCCACCCAGGACCCTGTGA...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTACATTGATGACATCTaGTTCAAGTCCAGTCAAGAA +
Preference number: 4 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRYIDDI*FKSSQE
Trigger: TTCTTGACTGGACTTGAACCAGATGTCATCAATGTA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGCATTGGTAGCCAATaGGGAAGAGTCGACCCTCAC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSIGSQ*GRVDPH
Trigger: GTGAGGGTCGACTCTTCCCCATTGGCTACCAATGCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTATGCACAATGGTCTaGTTCTCCTCTGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLCTMV*FSSAAS
Trigger: AGAAGCAGCAGAGGAGAACCAGACCATTGTGCATAG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATTGGGCTATGCACAATaGTCTGGTTCTCCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRLGYAQ*SGSPLL
Trigger: CAGCAGAGGAGAACCAGACCATTGTGCATAGCCCAA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGATCCAGATTCTGAATaGGGGAGTGGTGTACAGGAT +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGDPDSE*GSGVQD
Trigger: ATCCTGTACACCACTCCCCCATTCAGAATCTGGATC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAACAGTAGGGATGTGGTaGGTCAGGGAAGATGGACTT +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRTVGMW*VREDGL
Trigger: AAGTCCATCTTCCCTGACCCACCACATCCCTACTGT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGTGGATGTGGCAGGTTTaGGGGGTTCTGGAGCAGGAC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKWMWQV*GVLEQD
Trigger: GTCCTGCTCCAGAACCCCCCAAACCTGCCACATCCA...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGAACTCCACGGACTGTaGGCGTTTTCATGCGAACAC +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLELHGL*AFSCEH
Trigger: GTGTTCGCATGAAAACGCCCACAGTCCGTGGAGTTC...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGTTTTCTTTGTCCTCTaGAGATGGAGGCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRVFFVL*RWRLFL
Trigger: GAGGAAGAGCCTCCATCTCCAGAGGACAAAGAAAAC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGATGGGGATTCAGAGGTaGCTCTTCCTGGCCCTCTCC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKMGIQR*LFLALS
Trigger: GGAGAGGGCCAGGAAGAGCCACCTCTGAATCCCCAT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGAGACAGAGTGCACACTaGCGAGGGTCATCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKRQSAH*RGSSRC
Trigger: ACACCTGGATGACCCTCGTCAGTGTGCACTCTGTCT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCTCAAACACTTCAGCTaGCCAAATGGCACAATTGAC +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGLKHFS*PNGTID
Trigger: GTCAATTGTGCCATTTGGTCAGCTGAAGTGTTTGAG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGGGGATCCAGATTCTaGATGGGGGAGTGGTGTACA +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGGSRF*MGEWCT
Trigger: TGTACACCACTCCCCCATTCAGAATCTGGATCCCCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGAAATCCACAATTTCTaGAGGCAGGTCTTCAGGAGG +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILREIHNF*RQVFRR
Trigger: CCTCCTGAAGACCTGCCTTCAGAAATTGTGGATTTC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGCTCTGCCAGGAAGATaGCAGCATCGTGGTGGATGC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGALPGR*QHRGGC
Trigger: GCATCCACCACGATGCTGTCATCTTCCTGGCAGAGC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCTTTGGATGTCTTTTTaGGATGACGAAAGCGCATGG +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRLWMSF*DDESAW
Trigger: CCATGCGCTTTCGTCATCTCAAAAAGACATCCAAAG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGCGCAAGGCAAAGATaGCAATGTGTTTCTGGCCTT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLGARQR*QCVSGL
Trigger: AAGGCCAGAAACACATTGTCATCTTTGCCTTGCGCC...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGGTGATGGAGGTGGCTaGGCTTGTGGTTGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGGDGGG*ACGCCG
Trigger: ACCACAGCAACCACAAGCGCAGCCACCTCCATCACC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGGCTCACCCTCCCCTaGCATCTTCACAAATACTTG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLRLTLP*HLHKYL
Trigger: CAAGTATTTGTGAAGATGGCAGGGGAGGGTGAGCCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCTTTCCTCCTCAGGCTaGTCCCCAGGATTGTTCAGG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKLSSSG*SPGLFR
Trigger: CCTGAACAATCCTGGGGAGCAGCCTGAGGAGGAAAG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCACCTCCAAGCTCTCTaGCTCCACACTGAAGCCATC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKHLQAL*LHTEAI
Trigger: GATGGCTTCAGTGTGGAGGCAGAGAGCTTGGAGGTG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACCGTGCATGCCCTCGTaGTTCTTGCACTTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLPCMPS*FLHFLN
Trigger: ATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCATCAAAGTCATCCATaGGGAACATGTAGCACCCAA +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRHQSHP*GTCSTQ
Trigger: TTGGGTGCTACATGTTCCGCATGGATGACTTTGATG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCATCAAAGTCATCCATaGGGAACATGTAGCACCCAA +
Preference number: 4 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGHQSHP*GTCSTQ
Trigger: TTGGGTGCTACATGTTCCGCATGGATGACTTTGATG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGGTGGTGCTAGGGTTTaGAGTGGGAGAAAGGGTGCC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGGGARV*SGRKGA
Trigger: GGCACCCTTTCTCCCACTCCAAACCCTAGCACCACC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGTTGGCATGCACCCAGTaGTCACACTGTGCACACTGC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKLACTQ*SHCAHC
Trigger: GCAGTGTGCACAGTGTGACCACTGGGTGCATGCCAA...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGTGTCGCCCCAGCACATaGCCCACACGTGTACAACAC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGCRPST*PTRVQH
Trigger: GTGTTGTACACGTGTGGGCCATGTGCTGGGGCGACA...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAGGTCTTCAGGAGGTTaGGCTCTGTCGCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGRSSGG*ALSPAA
Trigger: AGCAGCAGGCGACAGAGCCCAACCTCCTGAAGACCT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGTGGATGTGGCAGGTTTaGGGGGTTCTGGAGCAGGAC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGWMWQV*GVLEQD
Trigger: GTCCTGCTCCAGAACCCCCCAAACCTGCCACATCCA...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGATGACAGCATCGTaGTGGATGCCCAGGAGCCGC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGKMTAS*WMPRSR
Trigger: GCGGCTCCTGGGCATCCACCACGATGCTGTCATCTT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGATGGGGATTCAGAGGTaGCTCTTCCTGGCCCTCTCC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGMGIQR*LFLALS
Trigger: GGAGAGGGCCAGGAAGAGCCACCTCTGAATCCCCAT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCTTCTTCATCACAGGTaGCTCCCTCGGGGAGCACAC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGLLHHR*LPRGAH
Trigger: GTGTGCTCCCCGAGGGAGCCACCTGTGATGAAGAAG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCAGCATTGCCGTGCATaGTGGCGTCCACCACATCAA +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKQHCRA*WRPPHQ
Trigger: TTGATGTGGTGGACGCCACCATGCACGGCAATGCTG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAGGAGTCAAGGGTGGTaGCGGAAGCTTTGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGRSQGW*RKLCLF
Trigger: GAAGAGGCAAAGCTTCCGTCACCACCCTTGACTCCT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCTCGTAGTCTTCATCTaGGAGTCCCTCACACTTGGC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKLVVFI*ESLTLG
Trigger: GCCAAGTGTGAGGGACTCTCAGATGAAGACTACGAG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAGCCAAGGGAGGTGCTaGAGGAAGAGAGTCCTCTCT +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGSQGRC*RKRVLS
Trigger: AGAGAGGACTCTCTTCCTTCAGCACCTCCCTTGGCT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGGCCTTCCACATGGATaGCACGAGAGAAGCAGTTGG +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGGLPHG*HERSSW
Trigger: CCAACTGCTTCTCTCGTGTCATCCATGTGGAAGGCC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGAGGAGACTCTTCCTaGTTCTCTGGGGCTGGATAT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGGDSS*FSGAGY
Trigger: ATATCCAGCCCCAGAGAAGCAGGAAGAGTCTCCTCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGAAGGGGTTGGGCTATaGACAATGGTCTGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKEGVGL*TMVWFS
Trigger: GGAGAACCAGACCATTGTGCATAGCCCAACCCCTTC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCTGGTGGACCGAAGCTaGACCTCATCCTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKLVDRS*TSSSSS
Trigger: TGAAGAAGAGGATGAGGTGCAGCTTCGGTCCACCAG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGTCCAGACAGAAGGGGTaGAAAGGATCGCAGCAGACT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKSRQKG*KGSQQT
Trigger: AGTCTGCTGCGATCCTTTCCACCCCTTCTGTCTGGA...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGCTGGGTCCTTGCTCTaGAAAGCTGCTGAAGGATCC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGAGSLL*KAAEGS
Trigger: GGATCCTTCAGCAGCTTTCCAGAGCAAGGACCCAGC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGAGCATTGGTAGCCAATaGGGAAGAGTCGACCCTCAC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKSIGSQ*GRVDPH
Trigger: GTGAGGGTCGACTCTTCCCCATTGGCTACCAATGCT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGATCCAGATTCTGAATaGGGGAGTGGTGTACAGGAT +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLDPDSE*GSGVQD
Trigger: ATCCTGTACACCACTCCCCCATTCAGAATCTGGATC...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGACACGTGTACAACACTaGGTCTGGCAGTCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKTRVQH*VWQSRK
Trigger: CTTTCTGGACTGCCAGACTCAGTGTTGTACACGTGT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCAGCATCCCCATACTTaGGACAGAGTGCACACTGAC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGQHPHT*DRVHTD
Trigger: GTCAGTGTGCACTCTGTCTCAAGTATGGGGATGCTG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGGAGGCCAGGAAGTTaGACATGTCAAAGGTACACT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGRPGS*TCQRYT
Trigger: AGTGTACCTTTGACATGTTCAACTTCCTGGCCTCCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGCGCAAGGCAAAGATaGCAATGTGTTTCTGGCCTT +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGARQR*QCVSGL
Trigger: AAGGCCAGAAACACATTGTCATCTTTGCCTTGCGCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACCACACTGCATCATCTTaGTCTCATAGTCATTGTCTT +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHHTASS*SHSHCL
Trigger: AAGACAATGACTATGAGAGCAAGATGATGCAGTGTG...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGAATCAGAGTTCTCCATaGCACCTCCAAGCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKNQSSP*HLQALC
Trigger: GCAGAGAGCTTGGAGGTGGCATGGAGAACTCTGATT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCCTAGAGCATGTAGCTaGGACAAGAGGAGGAGACTC +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGPRACS*DKRRRL
Trigger: GAGTCTCCTCCTCTTGTCCCAGCTACATGCTCTAGG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAATGACAATGTGTTTCTaGCCTTCCACATGGATGACA +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRMTMCF*PSTWMT
Trigger: TGTCATCCATGTGGAAGGCCAGAAACACATTGTCAT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGAAATCCACAATTTCTaGAGGCAGGTCTTCAGGAGG +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKEIHNF*RQVFRR
Trigger: CCTCCTGAAGACCTGCCTTCAGAAATTGTGGATTTC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTCGATCTTGAATAACTaGACCTTAGCTCTCTTAAGA +
Preference number: 4 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSILNN*TLALLR
Trigger: TCTTAAGAGAGCTAAGGTGCAGTTATTCAAGATCGA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCTTCATAGCAGCGTGTaGAAATTGGGCAGTAGTTCC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKLHSSV*KLGSSS
Trigger: GGAACTACTGCCCAATTTGCACACGCTGCTATGAAG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCCAGTGGTCACACTGTaGACACTGCATCATCTTGCT +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGPVVTL*TLHHLA
Trigger: AGCAAGATGATGCAGTGTGCACAGTGTGACCACTGG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAATCTTCACAAATACTTaGCCCAGCTTGTTGACAAGG +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLIFTNT*PSLLTR
Trigger: CCTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGAT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCCGTGCATGCCCTCGTaGTTCTTGCACTTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGPCMPS*FLHFLN
Trigger: ATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTACATTGATGACATCTaGTTCAAGTCCAGTCAAGAA +
Preference number: 4 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHYIDDI*FKSSQE
Trigger: TTCTTGACTGGACTTGAACCAGATGTCATCAATGTA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGTGGACCAACCCGTTTaGGGACCTGGTTTTCTTTGT +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGVDQPV*GPGFLC
Trigger: ACAAAGAAAACCAGGTCCCCAAACGGGTTGGTCCAC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAATGACAATGTGTTTCTaGCCTTCCACATGGATGACA +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLMTMCF*PSTWMT
Trigger: TGTCATCCATGTGGAAGGCCAGAAACACATTGTCAT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATCGATCTTGAATAACTaGACCTTAGCTCTCTTAAGA +
Preference number: 4 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSILNN*TLALLR
Trigger: TCTTAAGAGAGCTAAGGTGCAGTTATTCAAGATCGA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCATCAAAGTCATCCATaGGGAACATGTAGCACCCAA +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKHQSHP*GTCSTQ
Trigger: TTGGGTGCTACATGTTCCGCATGGATGACTTTGATG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR TCA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGTTCTGCTGTTGCTGTTaGTCGATCTTGAATAACTGC +
Preference number: 4 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKFCCCC*SILNNC
Trigger: GCAGTTATTCAAGATCGATCAACAGCAACAGCAGAA...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CCA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATACATTGATGACATCTaGTTCAAGTCCAGTCAAGAA +
Preference number: 4 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLYIDDI*FKSSQE
Trigger: TTCTTGACTGGACTTGAACCAGATGTCATCAATGTA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR GCA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCACACTGCATCATCTTaGTCTCATAGTCATTGTCTT +
Preference number: 4 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGHTASS*SHSHCL
Trigger: AAGACAATGACTATGAGAGCAAGATGATGCAGTGTG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp TTGACGCAGCGTCGGGCTGACTTGCGCTGCAGTAGGAGGGAGTCCTaGTCCTCGGGCCCGGGAGTGGCCCCCACCTCCTCCCGGGACCCC +
Preference number: 5 (lower is better)
Translates to: LTQRRADLRCSRRES*SSGPGVAPTSSRDP
Trigger: GGGGTCCCGGGAGGAGGTGGGGGCCACTCCCGGGCCCGAGGAGCAGGACTCCCTCCTACTGCAGCGCAAGTCAGCCCGACGCTGCGTCAA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGCTGCAGGGTGGGTTaGCGGGGCCGGCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESGCRVG*RGRLCS
Trigger: GGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp CCAGGGGCTAAAGCATCCTTGTCCAGGCGCCTTCGGGCCTTGAGCTaGAACACAGGCTGCAGGGTGGGTTTGCGGGGCCGGCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PGAKASLSRRLRALS*NTGCRVGLRGRLCS
Trigger: GGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCCTGGACAAGGATGCTTTAGCCCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp GGTGATGGAGGTGGCTGCGCTTGTGGTTGCTGTGGTGGTAGTGCCTaGGGTAGGAGCTGGGTCTGCAAGGCCTGCGGGGGCTGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: GDGGGCACGCCGGSA*GRSWVCKACGGCWS
Trigger: GCTCCAGCAGCCCCCGCAGGCCTTGCAGACCCAGCTCCTACCCCAGGCACTACCACCACAGCAACCACAAGCGCAGCCACCTCCATCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp GAGCTGAGGGGAAGTTCTGAGAGGAGAGGAGGTCCTCCGGGATGGTaGTGGCCTGGTGGCCAGGGGGCTAGGACGCCGAGATCGCCTTGG +
Preference number: 5 (lower is better)
Translates to: ELRGSSERRGGPPGW*WPGGQGARTPRSPW
Trigger: CCAAGGCGATCTCGGCGTCCTAGCCCCCTGGCCACCAGGCCACCACCATCCCGGAGGACCTCCTCTCCTCTCAGAACTTCCCCTCAGCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CCTGAGCTGAGGGGAAGTTCTGAGAGGAGAGGAGGTCCTCCGGGATaGTGGTGGCCTGGTGGCCAGGGGGCTAGGACGCCGAGATCGCCT +
Preference number: 5 (lower is better)
Translates to: PELRGSSERRGGPPG*WWPGGQGARTPRSP
Trigger: AGGCGATCTCGGCGTCCTAGCCCCCTGGCCACCAGGCCACCACCATCCCGGAGGACCTCCTCTCCTCTCAGAACTTCCCCTCAGCTCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp TATCCTCAGTGGCGAGGTCCTGCCGATCCCGGAGAGGGAGGGCACTaGGGCGGGGTACATCTTCAGGCACCATGGCCCGAGCCTGACCCA +
Preference number: 5 (lower is better)
Translates to: YPQWRGPADPGEGGH*GGVHLQAPWPEPDP
Trigger: TGGGTCAGGCTCGGGCCATGGTGCCTGAAGATGTACCCCGCCTCAGTGCCCTCCCTCTCCGGGATCGGCAGGACCTCGCCACTGAGGATA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CCTGGTGGCCAGGGGGCTAGGACGCCGAGATCGCCTTGGGGGAGCTaGAAAGTCCGAGTCTCCCACAGTAGGGATGTGGTGGGTCAGGGA +
Preference number: 5 (lower is better)
Translates to: PGGQGARTPRSPWGS*KVRVSHSRDVVGQG
Trigger: TCCCTGACCCACCACATCCCTACTGTGGGAGACTCGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGTCCTAGCCCCCTGGCCACCAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp TGGTGGTGGCCTGGTGGCCAGGGGGCTAGGACGCCGAGATCGCCTTaGGGGAGCTGGAAAGTCCGAGTCTCCCACAGTAGGGATGTGGTG +
Preference number: 5 (lower is better)
Translates to: WWWPGGQGARTPRSP*GSWKVRVSHSRDVV
Trigger: CACCACATCCCTACTGTGGGAGACTCGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGTCCTAGCCCCCTGGCCACCAGGCCACCACCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGGCGCCTTCGGGCCTaGAGCTGCAACACAGGCTGC +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESRRLRA*SCNTGC
Trigger: GCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCCT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCAGGCTTTGTGGGGGTaGGCTGCCATTAGCCAAGGG +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQQALWG*AAISQG
Trigger: CCCTTGGCTAATGGCAGCCAACCCCCACAAAGCCTG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGATGAATCGGGCAGCATaGCCGTGCATGGTGGCGTCC +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQMNRAA*PCMVAS
Trigger: GGACGCCACCATGCACGGCAATGCTGCCCGATTCAT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp GGTGGTGCTAGGGTTTGGAGTGGGAGAAAGGGTGCCCTCTGGTCCTaGCCGAGCAGCTTCCCTCTCTGCCCGCTGGCTAGGAGTCAGGGG +
Preference number: 5 (lower is better)
Translates to: GGARVWSGRKGALWS*PSSFPLCPLARSQG
Trigger: CCCCTGACTCCTAGCCAGCGGGCAGAGAGGGAAGCTGCTCGGTCAGGACCAGAGGGCACCCTTTCTCCCACTCCAAACCCTAGCACCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 90 bp GCATCCTTGTCCAGGCGCCTTCGGGCCTTGAGCTGCAACACAGGCTaGAGGGTGGGTTTGCGGGGCCGGCTCTGCTCCTCAGGTTCTAGT +
Preference number: 5 (lower is better)
Translates to: ASLSRRLRALSCNTG*RVGLRGRLCSSGSS
Trigger: ACTAGAACCTGAGGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCCTGGACAAGGATGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp ACAGCCTCAGCCTCGCTGTCTGTGCCATCATCCACTCCGTCCAGCTaGTCGATTCGGGGAGCTCCAGCAAGGGAACTGGGGGCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: TASASLSVPSSTPSS*SIRGAPARELGARA
Trigger: TGCCCTGGCCCCCAGTTCCCTTGCTGGAGCTCCCCGAATCGAGCAGCTGGACGGAGTGGATGATGGCACAGACAGCGAGGCTGAGGCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp AGGGTGCCCTCTGGTCCTGACCGAGCAGCTTCCCTCTCTGCCCGCTaGCTAGGAGTCAGGGGAGGCCTGCCCCTCTTCCTAGAGCATGTA +
Preference number: 5 (lower is better)
Translates to: RVPSGPDRAASLSAR*LGVRGGLPLFLEHV
Trigger: TACATGCTCTAGGAAGAGGGGCAGGCCTCCCCTGACTCCTAGCCAGCGGGCAGAGAGGGAAGCTGCTCGGTCAGGACCAGAGGGCACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 90 bp AACAGATCCAGTGGCGCCGTCTACGCGTGGCCCGGGTTGGGTAGCTaGGTCCCAGGCAGGCTGGGTGGTAAGCATGACGACAGCGTTCAC +
Preference number: 5 (lower is better)
Translates to: NRSSGAVYAWPGLGS*VPGRLGGKHDDSVH
Trigger: GTGAACGCTGTCGTCATGCTTACCACCCAGCCTGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGTAGACGGCGCCACTGGATCTGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGCTGTCCTCCACGTTaGGGGGTTCCAGGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESGCPPR*GVPGPG
Trigger: TCCAGGACCTGGAACCCCCAAACGTGGAGGACAGCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGGGGCTAAAGCATCCTaGTCCAGGCGCCTTCGGGCC +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREGAKAS*SRRLRA
Trigger: GGCCCGAAGGCGCCTGGACAAGGATGCTTTAGCCCC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGCACTGGCTCCTCCCTaGGCCCCCAAGGGCGATACT +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREALAPP*APKGDT
Trigger: AGTATCGCCCTTGGGGGCCAAGGGAGGAGCCAGTGC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGCTGCTCCCCAGGATaGTTCAGGTCCAGAACTCCA +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQGCSPG*FRSRTP
Trigger: TGGAGTTCTGGACCTGAACAATCCTGGGGAGCAGCC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CAACCCCGACAGTGCCCACAACGAGCCATTCTCATCTTCTTGCCATaGTGGGATGGCAGTGACCGCCGTGGTGTGTGGGCCAGGGCCCCT +
Preference number: 5 (lower is better)
Translates to: QPRQCPQRAILIFLP*WDGSDRRGVWARAP
Trigger: AGGGGCCCTGGCCCACACACCACGGCGGTCACTGCCATCCCACCATGGCAAGAAGATGAGAATGGCTCGTTGTGGGCACTGTCGGGGTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CCGTCTACGCGTGGCCCGGGTTGGGTAGCTGGGTCCCAGGCAGGCTaGGTGGTAAGCATGACGACAGCGTTCACATTCCAGGAGGTGCTT +
Preference number: 5 (lower is better)
Translates to: PSTRGPGWVAGSQAG*VVSMTTAFTFQEVL
Trigger: AAGCACCTCCTGGAATGTGAACGCTGTCGTCATGCTTACCACCCAGCCTGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGTAGACGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCTGTCCGGGGTCTGTTaGACAGTCCCCACAGCCTCC +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRARELSGVC*TVPTAS
Trigger: GGAGGCTGTGGGGACTGTCAAACAGACCCCGGACAG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGCTCTGAGGAAGGGGTaGGGCTATGCACAATGGTCT +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQALRKG*GYAQWS
Trigger: AGACCATTGTGCATAGCCCAACCCCTTCCTCAGAGC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCATGAATCGGGCAGCATaGCCGTGCATGGTGGCGTCC +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESMNRAA*PCMVAS
Trigger: GGACGCCACCATGCACGGCAATGCTGCCCGATTCAT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp CCCGAGCCTGACCCAAGGCCACAGCAGCGTGACGGCAGACATGTTTaGTTCGGGGGCCTTGTAAAGGTGACTCAGGGCCCGAGGCTCGAT +
Preference number: 5 (lower is better)
Translates to: PEPDPRPQQRDGRHV*FGGLVKVTQGPRLD
Trigger: ATCGAGCCTCGGGCCCTGAGTCACCTTTACAAGGCCCCCGAATCAAACATGTCTGCCGTCACGCTGCTGTGGCCTTGGGTCAGGCTCGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAATCGCCGGGGTGTCTaGATAACACGGGAGGAGCGA +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESNRRGV*ITREER
Trigger: TCGCTCCTCCCGTGTTATCAAGACACCCCGGCGATT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTTTCCAGTCCAGCCATaGGGAAAAGAGGCAAAGGGG +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQFPVQP*GKEAKG
Trigger: CCCCTTTGCCTCTTTTCCCAATGGCTGGACTGGAAA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCCAAACATGGCAGAACTaGCAGCGCCTGCAGCACCAG +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESQTWQN*QRLQHQ
Trigger: CTGGTGCTGCAGGCGCTGCAAGTTCTGCCATGTTTG...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGGAGGCAACACAGCATaGGGGAGCACTCCGTTTGGC +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREGGNTA*GSTPFG
Trigger: GCCAAACGGAGTGCTCCCCAATGCTGTGTTGCCTCC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGGTCACGATCTCCTaGCCATCTAGGAGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESGVTIS*PSRRSV
Trigger: CACAGACCTCCTAGATGGCAAGGAGATCGTGACCCC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGTGGGAGGAGGGCCATaGCTTGAATCTGTCCGAAGC +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESVGGGP*LESVRS
Trigger: GCTTCGGACAGATTCAAGCAATGGCCCTCCTCCCAC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGCTCTTCCTCAGAGCTaGAGGCCTCGCCTGCTGAAT +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESALPQS*RPRLLN
Trigger: ATTCAGCAGGCGAGGCCTCAAGCTCTGAGGAAGAGC...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp GGTTTAGGGATTGTCACAGCCGCTTCTGCTAACACTACTGCTTGCTaGTTTTTCCGGCAGGGACCGGCTGGCCGTCCTGGGGGCCTTCCC +
Preference number: 5 (lower is better)
Translates to: GLGIVTAASANTTAC*FFRQGPAGRPGGLP
Trigger: GGGAAGGCCCCCAGGACGGCCAGCCGGTCCCTGCCGGAAAAAGCAGCAAGCAGTAGTGTTAGCAGAAGCGGCTGTGACAATCCCTAAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 90 bp AGTGGTGGTGTGTGTTGTGGTGATGGAGGTGGCTGCGCTTGTGGTTaGTGTGGTGGTAGTGCCTGGGGTAGGAGCTGGGTCTGCAAGGCC +
Preference number: 5 (lower is better)
Translates to: SGGVCCGDGGGCACG*CGGSAWGRSWVCKA
Trigger: GGCCTTGCAGACCCAGCTCCTACCCCAGGCACTACCACCACAGCAACCACAAGCGCAGCCACCTCCATCACCACAACACACACCACCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp TTGAGCTGCAACACAGGCTGCAGGGTGGGTTTGCGGGGCCGGCTCTaGTCCTCAGGTTCTAGTACTGGCAGCTCATGTTCTCTGGGGGTG +
Preference number: 5 (lower is better)
Translates to: LSCNTGCRVGLRGRL*SSGSSTGSSCSLGV
Trigger: CACCCCCAGAGAACATGAGCTGCCAGTACTAGAACCTGAGGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCTCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp GACGACAGCGTTCACATTCCAGGAGGTGCTTGGACCCTCGGCCTTTaGGCCCACAAACATGGCAGAACTTGCAGCGCCTGCAGCACCAGG +
Preference number: 5 (lower is better)
Translates to: DDSVHIPGGAWTLGL*AHKHGRTCSACSTR
Trigger: CCTGGTGCTGCAGGCGCTGCAAGTTCTGCCATGTTTGTGGGCGCAAAGGCCGAGGGTCCAAGCACCTCCTGGAATGTGAACGCTGTCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CGCCTTGGGGGAGCTGGAAAGTCCGAGTCTCCCACAGTAGGGATGTaGTGGGTCAGGGAAGATGGACTTCCTGGAGAGGGCAGAGGACCA +
Preference number: 5 (lower is better)
Translates to: RLGGAGKSESPTVGM*WVREDGLPGEGRGP
Trigger: TGGTCCTCTGCCCTCTCCAGGAAGTCCATCTTCCCTGACCCACCACATCCCTACTGTGGGAGACTCGGACTTTCCAGCTCCCCCAAGGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CCCTGGAGCTCCAGGGAGCCAAGCAAATGTTCGGGTGGGGTCAGCTaGGCTAGTGGACAGGCTTTGTGGGGGTTGGCTGCCATTAGCCAA +
Preference number: 5 (lower is better)
Translates to: PWSSREPSKCSGGVS*ASGQALWGLAAISQ
Trigger: TTGGCTAATGGCAGCCAACCCCCACAAAGCCTGTCCACTAGCCCAGCTGACCCCACCCGAACATTTGCTTGGCTCCCTGGAGCTCCAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGCAGGGAACCCAGACTaGCAACACGGGCCTTTTCCA +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREAGNPD*QHGPFP
Trigger: TGGAAAAGGCCCGTGTTGCAAGTCTGGGTTCCCTGC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCTGTCCGGGGTCTGTTaGACAGTCCCCACAGCCTCC +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRLSGVC*TVPTAS
Trigger: GGAGGCTGTGGGGACTGTCAAACAGACCCCGGACAG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGGGTTTATCCAAGCAGTaGACACAAGAGCCACAGTCC +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQGLSKQ*TQEPQS
Trigger: GGACTGTGGCTCTTGTGTCAACTGCTTGGATAAACC...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGGGGCTAAAGCATCCTaGTCCAGGCGCCTTCGGGCC +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGGAKAS*SRRLRA
Trigger: GGCCCGAAGGCGCCTGGACAAGGATGCTTTAGCCCC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
61% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGGGTGCCCAGGGAGTaGATTCTGATGGAGCCAATG +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESRVPRE*ILMEPM
Trigger: CATTGGCTCCATCAGAATCAACTCCCTGGGCACCCT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAAGGTGGATACCCTCTaGACACGAATGGCCTGGCGT +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESKVDTL*TRMAWR
Trigger: ACGCCAGGCCATTCGTGTCAAGAGGGTATCCACCTT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGGCTGCTCCCCAGGATaGTTCAGGTCCAGAACTCCA +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREGCSPG*FRSRTP
Trigger: TGGAGTTCTGGACCTGAACAATCCTGGGGAGCAGCC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTGGGAGGCCAGGAAGTaGAACATGTCAAAGGTACAC +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQWEARK*NMSKVH
Trigger: GTGTACCTTTGACATGTTCAACTTCCTGGCCTCCCA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp TTAACAGGACTGGTGACCACAGGGACAAAGCGAGGCAAGCTGAGGTaGTTGGTCCGCCCCACTGCCCTAGGCTCAGGCTCTGCTGGAGAG +
Preference number: 5 (lower is better)
Translates to: LTGLVTTGTKRGKLR*LVRPTALGSGSAGE
Trigger: CTCTCCAGCAGAGCCTGAGCCTAGGGCAGTGGGGCGGACCAATCACCTCAGCTTGCCTCGCTTTGTCCCTGTGGTCACCAGTCCTGTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 90 bp TCGGGTTTAGGGATTGTCACAGCCGCTTCTGCTAACACTACTGCTTaGTGCTTTTTCCGGCAGGGACCGGCTGGCCGTCCTGGGGGCCTT +
Preference number: 5 (lower is better)
Translates to: SGLGIVTAASANTTA*CFFRQGPAGRPGGL
Trigger: AAGGCCCCCAGGACGGCCAGCCGGTCCCTGCCGGAAAAAGCAGCAAGCAGTAGTGTTAGCAGAAGCGGCTGTGACAATCCCTAAACCCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 90 bp CTCTCAGTCTCTGATGCTGATGACGTATCCTCAGTGGCGAGGTCCTaGCGATCCCGGAGAGGGAGGGCACTGAGGCGGGGTACATCTTCA +
Preference number: 5 (lower is better)
Translates to: LSVSDADDVSSVARS*RSRRGRALRRGTSS
Trigger: TGAAGATGTACCCCGCCTCAGTGCCCTCCCTCTCCGGGATCGGCAGGACCTCGCCACTGAGGATACGTCATCAGCATCAGAGACTGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp AGGAGGGGTAAGCACCGATTCATAGATCTTCAGGTGGGCTTCACTTaGGGTAAACTGAGGGGCCCGAAGGAGCAAGGGCCTCCGGGAGGG +
Preference number: 5 (lower is better)
Translates to: RRGKHRFIDLQVGFT*GKLRGPKEQGPPGG
Trigger: CCCTCCCGGAGGCCCTTGCTCCTTCGGGCCCCTCAGTTTACCCCAAGTGAAGCCCACCTGAAGATCTATGAATCGGTGCTTACCCCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGGCTGTCCTCCACGTTaGGGGGTTCCAGGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGGCPPR*GVPGPG
Trigger: TCCAGGACCTGGAACCCCCAAACGTGGAGGACAGCC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGCCTCTTCCTTCTCCTaGGCTAGCATCGCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREASSFS*ASIASS
Trigger: GGAAGAAGCGATGCTAGCCAAGGAGAAGGAAGAGGC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCGCCACTTTCTGCTGTaGCTGTTGATCGATCTTGAA +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQRHFLL*LLIDLE
Trigger: TTCAAGATCGATCAACAGCAACAGCAGAAAGTGGCG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGGCTGCAGGGTGGGTTaGCGGGGCCGGCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRGCRVG*RGRLCS
Trigger: GGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCATTCCAGGAGGTGCTaGGACCCTCGGCCTTTGCGC +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGHSRRC*DPRPLR
Trigger: GCGCAAAGGCCGAGGGTCCAAGCACCTCCTGGAATG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAGCAGCGTGTGCAAATaGGGCAGTAGTTCCCTTTTT +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQSSVCK*GSSSLF
Trigger: AAAAAGGGAACTACTGCCCAATTTGCACACGCTGCT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGGAGGCAACACAGCATaGGGGAGCACTCCGTTTGGC +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRGGNTA*GSTPFG
Trigger: GCCAAACGGAGTGCTCCCCAATGCTGTGTTGCCTCC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGTGGCAGAAAACCTTCTaGTCATCCTGGAAGATGCAG +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQWQKTF*SSWKMQ
Trigger: CTGCATCTTCCAGGATGACAAGAAGGTTTTCTGCCA...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGAACTTTCGCTTGAAGTaGATGCCCTCGAAGTCCACA +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQNFRLK*MPSKST
Trigger: TGTGGACTTCGAGGGCATCAACTTCAAGCGAAAGTT...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGAGGGTGCCCAGGGAGTaGATTCTGATGGAGCCAATG +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRARERVPRE*ILMEPM
Trigger: CATTGGCTCCATCAGAATCAACTCCCTGGGCACCCT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGCAGGCTTTGTGGGGGTaGGCTGCCATTAGCCAAGGG +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRQALWG*AAISQG
Trigger: CCCTTGGCTAATGGCAGCCAACCCCCACAAAGCCTG...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp CTGAGTCATCTGAGTCCTCGAAGACATCATAGGAGGGCCGCTGTTTaGCGCAGCGTCGGGCTGACTTGCGCTGCAGTAGGAGGGAGTCCT +
Preference number: 5 (lower is better)
Translates to: LSHLSPRRHHRRAAV*RSVGLTCAAVGGSP
Trigger: AGGACTCCCTCCTACTGCAGCGCAAGTCAGCCCGACGCTGCGTCAAACAGCGGCCCTCCTATGATGTCTTCGAGGACTCAGATGACTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp ACAGCTTGTAAATCACAGGGTCCTGGGTGGAGCTGCTTCCCATCCTaGCCACACTGGGTGCACAGCAGCAATGGGCCTGCCACCTTTGAG +
Preference number: 5 (lower is better)
Translates to: TACKSQGPGWSCFPS*PHWVHSSNGPATFE
Trigger: CTCAAAGGTGGCAGGCCCATTGCTGCTGTGCACCCAGTGTGGGCAGGATGGGAAGCAGCTCCACCCAGGACCCTGTGATTTACAAGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp TGCCACTGGGACTCAAACAGTAGGTCTGAGGAACCATCGAGGGCCTaGGAAGGAGCTTCTGCAAGTGGCAGCAAAGGACACCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: CHWDSNSRSEEPSRA*EGASASGSKGHRSW
Trigger: CCAGGACCGGTGTCCTTTGCTGCCACTTGCAGAAGCTCCTTCCCAGGCCCTCGATGGTTCCTCAGACCTACTGTTTGAGTCCCAGTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGCAGGGAACCCAGACTaGCAACACGGGCCTTTTCCA +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRAGNPD*QHGPFP
Trigger: TGGAAAAGGCCCGTGTTGCAAGTCTGGGTTCCCTGC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGCCATTCTCATCTTCTaGCCATGGTGGGATGGCAGT +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREAILIF*PWWDGS
Trigger: ACTGCCATCCCACCATGGCAAGAAGATGAGAATGGC...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCGGGCAGCATCTTCACAAATACTaGCCCCAGCTTGTTGACAAG +
Preference number: 5 (lower is better)
Translates to: REPQARVRWQRAREESGQHLHKY*PQLVDK
Trigger: CTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGATG...CTGCCCGGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp CTAGAATTCGGCACCGATACCAGCAGCGCCTCCGAGCATCCACTGTaGTCCAATACAGGCGGGAGCATTGGTAGCCAATGGGGAAGAGTC +
Preference number: 5 (lower is better)
Translates to: LEFGTDTSSASEHPL*SNTGGSIGSQWGRV
Trigger: GACTCTTCCCCATTGGCTACCAATGCTCCCGCCTGTATTGGAGCACAGTGGATGCTCGGAGGCGCTGCTGGTATCGGTGCCGAATTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CTGGGTGGTAAGCATGACGACAGCGTTCACATTCCAGGAGGTGCTTaGACCCTCGGCCTTTGCGCCCACAAACATGGCAGAACTTGCAGC +
Preference number: 5 (lower is better)
Translates to: LGGKHDDSVHIPGGA*TLGLCAHKHGRTCS
Trigger: GCTGCAAGTTCTGCCATGTTTGTGGGCGCAAAGGCCGAGGGTCCAAGCACCTCCTGGAATGTGAACGCTGTCGTCATGCTTACCACCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp ATGGTCCAAGGATGGAGGCAACACAGCATTGGGGAGCACTCCGTTTaGCAGCCGTGTACTCCGTCGCCAGTACTTAGGATCATGGGCGTC +
Preference number: 5 (lower is better)
Translates to: MVQGWRQHSIGEHSV*QPCTPSPVLRIMGV
Trigger: GACGCCCATGATCCTAAGTACTGGCGACGGAGTACACGGCTGCCAAACGGAGTGCTCCCCAATGCTGTGTTGCCTCCATCCTTGGACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CTTGGGGGAGCTGGAAAGTCCGAGTCTCCCACAGTAGGGATGTGGTaGGTCAGGGAAGATGGACTTCCTGGAGAGGGCAGAGGACCAAAA +
Preference number: 5 (lower is better)
Translates to: LGGAGKSESPTVGMW*VREDGLPGEGRGPK
Trigger: TTTTGGTCCTCTGCCCTCTCCAGGAAGTCCATCTTCCCTGACCCACCACATCCCTACTGTGGGAGACTCGGACTTTCCAGCTCCCCCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCAGGGCTTAGCGGCATaGAAGCCGCCACTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGQGLAA*KPPLSA
Trigger: AGCAGAAAGTGGCGGCTTCAATGCCGCTAAGCCCTG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGGCGCCTTCGGGCCTaGAGCTGCAACACAGGCTGC +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRRRLRA*SCNTGC
Trigger: GCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCCT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGGGGCTAAAGCATCCTaGTCCAGGCGCCTTCGGGCC +
Preference number: 5 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHGAKAS*SRRLRA
Trigger: GGCCCGAAGGCGCCTGGACAAGGATGCTTTAGCCCC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGCAAACATGGCAGAACTaGCAGCGCCTGCAGCACCAG +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGQTWQN*QRLQHQ
Trigger: CTGGTGCTGCAGGCGCTGCAAGTTCTGCCATGTTTG...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAGCAGCGTGTGCAAATaGGGCAGTAGTTCCCTTTTT +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESSSVCK*GSSSLF
Trigger: AAAAAGGGAACTACTGCCCAATTTGCACACGCTGCT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCACATGAAGTGGAAGTaGCTGAGACATGAGGACAGG +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREHMKWK*LRHEDR
Trigger: CCTGTCCTCATGTCTCAGCAACTTCCACTTCATGTG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGTGGGAGGAGGGCCATaGCTTGAATCTGTCCGAAGC +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGVGGGP*LESVRS
Trigger: GCTTCGGACAGATTCAAGCAATGGCCCTCCTCCCAC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGACGCCGAGATCGCCTaGGGGGAGCTGGAAAGTCCG +
Preference number: 5 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGDAEIA*GELESP
Trigger: CGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGTC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGCTCTTCCTCAGAGCTaGAGGCCTCGCCTGCTGAAT +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGALPQS*RPRLLN
Trigger: ATTCAGCAGGCGAGGCCTCAAGCTCTGAGGAAGAGC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp TTCATGCGAACACGACTGAACCCACTGCCACTGATCCCTGGCACATaGTGGGCATCCTCCAAGGACTCTCCATCTTCATCCAGCCGGGGA +
Preference number: 5 (lower is better)
Translates to: FMRTRLNPLPLIPGT*WASSKDSPSSSSRG
Trigger: TCCCCGGCTGGATGAAGATGGAGAGTCCTTGGAGGATGCCCATCATGTGCCAGGGATCAGTGGCAGTGGGTTCAGTCGTGTTCGCATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp TTGACACAAGAGCCACAGTCCTGCACACGCAAGCAACCCCGACAGTaGCCACAACGAGCCATTCTCATCTTCTTGCCATGGTGGGATGGC +
Preference number: 5 (lower is better)
Translates to: LTQEPQSCTRKQPRQ*PQRAILIFLPWWDG
Trigger: GCCATCCCACCATGGCAAGAAGATGAGAATGGCTCGTTGTGGGCACTGTCGGGGTTGCTTGCGTGTGCAGGACTGTGGCTCTTGTGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CAGCAGAACGCAGACTCTAGCAGCTTCAGTAGGAGTCCTTTCATCTaGCTTCCAGCCCGGCGCTCTGGGGTCTCTCCTTCTTCTGAATGC +
Preference number: 5 (lower is better)
Translates to: QQNADSSSFSRSPFI*LPARRSGVSPSSEC
Trigger: GCATTCAGAAGAAGGAGAGACCCCAGAGCGCCGGGCTGGAAGCCAGATGAAAGGACTCCTACTGAAGCTGCTAGAGTCTGCGTTCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGCACTGCTTCTTAGTGTaGGGACCCCCAAATTTAGGT +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRAREHCFLV*GPPNLG
Trigger: ACCTAAATTTGGGGGTCCCAACACTAAGAAGCAGTG...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAGCTCATGGAGGCCTTaGCTAGCACACAGCAGACAC +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGSSWRP*LAHSRH
Trigger: GTGTCTGCTGTGTGCTAGCAAAGGCCTCCATGAGCT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGAAAGCAGCTGGGTCCTaGCTCTGGAAAGCTGCTGAA +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRKAAGS*LWKAAE
Trigger: TTCAGCAGCTTTCCAGAGCAAGGACCCAGCTGCTTT...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGACGCCGAGATCGCCTaGGGGGAGCTGGAAAGTCCG +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRDAEIA*GELESP
Trigger: CGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGTC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGACTTGCCCCAGCTTGTaGACAAGGATGATCTTGGAT +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRARETCPSL*TRMILD
Trigger: ATCCAAGATCATCCTTGTCAACAAGCTGGGGCAAGT...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCAATACTTGCCCCAGCTaGTTGACAAGGATGATCTTG +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESNTCPS*LTRMIL
Trigger: CAAGATCATCCTTGTCAACAAGCTGGGGCAAGTATT...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAAGGTGGATACCCTCTaGACACGAATGGCCTGGCGT +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGKVDTL*TRMAWR
Trigger: ACGCCAGGCCATTCGTGTCAAGAGGGTATCCACCTT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp GCCTCCTTAGAGTCAGCATCCCCATACTTGAGACAGAGTGCACACTaGCGAGGGTCATCCAGGTGTGAGAAAGCAGCTGGGTCCTTGCTC +
Preference number: 5 (lower is better)
Translates to: ASLESASPYLRQSAH*RGSSRCEKAAGSLL
Trigger: GAGCAAGGACCCAGCTGCTTTCTCACACCTGGATGACCCTCGTCAGTGTGCACTCTGTCTCAAGTATGGGGATGCTGACTCTAAGGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp TGGAGAGGAGACTGGTACTGGTTCCTGGGGAGCAGGTGGGGAGGTTaGAACAGGAGGTCGAACAATAGAAGCCTCCACCTTTGGAGGTTT +
Preference number: 5 (lower is better)
Translates to: WRGDWYWFLGSRWGG*NRRSNNRSLHLWRF
Trigger: AAACCTCCAAAGGTGGAGGCTTCTATTGTTCGACCTCCTGTTGCAACCTCCCCACCTGCTCCCCAGGAACCAGTACCAGTCTCCTCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 90 bp ATCTGGCTTCCAGCCCGGCGCTCTGGGGTCTCTCCTTCTTCTGAATaGCTCATCAAGATGGCCACTACGTCTTCCATGAAGCTGTGCACA +
Preference number: 5 (lower is better)
Translates to: IWLPARRSGVSPSSE*LIKMATTSSMKLCT
Trigger: TGTGCACAGCTTCATGGAAGACGTAGTGGCCATCTTGATGAGGCATTCAGAAGAAGGAGAGACCCCAGAGCGCCGGGCTGGAAGCCAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp GTTGGGCTATGCACAATGGTCTGGTTCTCCTCTGCTGCTTCTAGGTaGACTGGCTCCTCCCTTGGCCCCCAAGGGCGATACTCTAGAATT +
Preference number: 5 (lower is better)
Translates to: VGLCTMVWFSSAASR*TGSSLGPQGRYSRI
Trigger: AATTCTAGAGTATCGCCCTTGGGGGCCAAGGGAGGAGCCAGTGCACCTAGAAGCAGCAGAGGAGAACCAGACCATTGTGCATAGCCCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp ACTCCGTTTGGCAGCCGTGTACTCCGTCGCCAGTACTTAGGATCATaGGCGTCAAACCAGCAGAACGCAGACTCTAGCAGCTTCAGTAGG +
Preference number: 5 (lower is better)
Translates to: TPFGSRVLRRQYLGS*ASNQQNADSSSFSR
Trigger: CCTACTGAAGCTGCTAGAGTCTGCGTTCTGCTGGTTTGACGCCCATGATCCTAAGTACTGGCGACGGAGTACACGGCTGCCAAACGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp GGGCGTTTTCATGCGAACACGACTGAACCCACTGCCACTGATCCCTaGCACATGATGGGCATCCTCCAAGGACTCTCCATCTTCATCCAG +
Preference number: 5 (lower is better)
Translates to: GRFHANTTEPTATDP*HMMGILQGLSIFIQ
Trigger: CTGGATGAAGATGGAGAGTCCTTGGAGGATGCCCATCATGTGCCAGGGATCAGTGGCAGTGGGTTCAGTCGTGTTCGCATGAAAACGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGGCTGCAGGGTGGGTTaGCGGGGCCGGCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGGCRVG*RGRLCS
Trigger: GGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACAGGTCTTCAGGAGGTaGGGCTCTGTCGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRQVFRR*GSVACC
Trigger: GCAGCAGGCGACAGAGCCCAACCTCCTGAAGACCTG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGATGAATCGGGCAGCATaGCCGTGCATGGTGGCGTCC +
Preference number: 5 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGMNRAA*PCMVAS
Trigger: GGACGCCACCATGCACGGCAATGCTGCCCGATTCAT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp TTTCATCTGGCTTCCAGCCCGGCGCTCTGGGGTCTCTCCTTCTTCTaGATGCCTCATCAAGATGGCCACTACGTCTTCCATGAAGCTGTG +
Preference number: 5 (lower is better)
Translates to: FHLASSPALWGLSFF*MPHQDGHYVFHEAV
Trigger: CACAGCTTCATGGAAGACGTAGTGGCCATCTTGATGAGGCATTCAGAAGAAGGAGAGACCCCAGAGCGCCGGGCTGGAAGCCAGATGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp AGCGTGTGCAAATTGGGCAGTAGTTCCCTTTTTCATAGAGCTCGGTaGACCTGGGGCAGAGGCTGTAATCTCCAGACCACTCGACATCCC +
Preference number: 5 (lower is better)
Translates to: SVCKLGSSSLFHRAR*TWGRGCNLQTTRHP
Trigger: GGGATGTCGAGTGGTCTGGAGATTACAGCCTCTGCCCCAGGTGCACCGAGCTCTATGAAAAAGGGAACTACTGCCCAATTTGCACACGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp GGGGGTGCTACAGGCTCACCCTCCCCTGCCATCTTCACAAATACTTaGCCCAGCTTGTTGACAAGGATGATCTTGGATGTGGCAGGTTTG +
Preference number: 5 (lower is better)
Translates to: GGATGSPSPAIFTNT*PSLLTRMILDVAGL
Trigger: CAAACCTGCCACATCCAAGATCATCCTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGATGGCAGGGGAGGGTGAGCCTGTAGCACCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp CAGTTGGGCTCACATGAGTGGTTGATGAATCGGGCAGCATTGCCGTaGATGGTGGCGTCCACCACATCAAAGTCATCCATGCGGAACATG +
Preference number: 5 (lower is better)
Translates to: QLGSHEWLMNRAALP*MVASTTSKSSMRNM
Trigger: CATGTTCCGCATGGATGACTTTGATGTGGTGGACGCCACCATGCACGGCAATGCTGCCCGATTCATCAACCACTCATGTGAGCCCAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp AGGCAGAGCTCACAGCGCATCTGCCTTCCACGTGCAACAGCAGCATaGACGTTCTTGAGGGAGCCATCATTCTCCTCAAACACTTCAGCT +
Preference number: 5 (lower is better)
Translates to: RQSSQRICLPRATAA*TFLREPSFSSNTSA
Trigger: AGCTGAAGTGTTTGAGGAGAATGATGGCTCCCTCAAGAACGTCCATGCTGCTGTTGCACGTGGAAGGCAGATGCGCTGTGAGCTCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CTGCTGATCTCAAAGCGCAGGTGTGGACCAACCCGTTTGGGGACCTaGTTTTCTTTGTCCTCTGGAGATGGAGGCTCTTCCTCAGAGCTT +
Preference number: 5 (lower is better)
Translates to: LLISKRRCGPTRLGT*FSLSSGDGGSSSEL
Trigger: AAGCTCTGAGGAAGAGCCTCCATCTCCAGAGGACAAAGAAAACCAGGTCCCCAAACGGGTTGGTCCACACCTGCGCTTTGAGATCAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGGACCAGGTCCCTCCTaGCATTTCCAACTGCCAGCT +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRGPGPS*HFQLPA
Trigger: AGCTGGCAGTTGGAAATGCAAGGAGGGACCTGGTCC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp GAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGGAATCCTCTTCCTCTTGCTTGTaGTTATCCTCATTGTCATCT +
Preference number: 5 (lower is better)
Translates to: ETREPQARVRWQRAREESSSSCL*LSSLSS
Trigger: AGATGACAATGAGGATAACAACAAGCAAGAGGAAGA...GGATTCCTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGAGCAGGTGGGGAGGTaGCAACAGGAGGTCGAACAA +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHREQVGR*QQEVEQ
Trigger: TTGTTCGACCTCCTGTTGCAACCTCCCCACCTGCTC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGCAGGGAACCCAGACTaGCAACACGGGCCTTTTCCA +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRAGNPD*QHGPFP
Trigger: TGGAAAAGGCCCGTGTTGCAAGTCTGGGTTCCCTGC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCAGGGCTTAGCGGCATaGAAGCCGCCACTTTCTGCT +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRQGLAA*KPPLSA
Trigger: AGCAGAAAGTGGCGGCTTCAATGCCGCTAAGCCCTG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACTGTCCGGGGTCTGTTaGACAGTCCCCACAGCCTCC +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLLSGVC*TVPTAS
Trigger: GGAGGCTGTGGGGACTGTCAAACAGACCCCGGACAG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGGGTTTATCCAAGCAGTaGACACAAGAGCCACAGTCC +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGGLSKQ*TQEPQS
Trigger: GGACTGTGGCTCTTGTGTCAACTGCTTGGATAAACC...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTTCCGAGCCTCTATCTaGTCACACTTCCGGTATACA +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRFRASI*SHFRYT
Trigger: TGTATACCGGAAGTGTGACAAGATAGAGGCTCGGAA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTCGACATCCCAGTTCTaGCCTGGAGTTGCCCCACAG +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSTSQF*PGVAPQ
Trigger: CTGTGGGGCAACTCCAGGCAAGAACTGGGATGTCGA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACATGGGCCTGCCACCTTaGAGCTTAACAGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHMGLPP*SLTGPG
Trigger: TCCAGGGCCTGTTAAGCTCAAAGGTGGCAGGCCCAT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTGGCAGAAAACCTTCTaGTCATCCTGGAAGATGCAG +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRWQKTF*SSWKMQ
Trigger: CTGCATCTTCCAGGATGACAAGAAGGTTTTCTGCCA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGGTCAAGAACTTTCGCTaGAAGTTGATGCCCTCGAAG +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRVKNFR*KLMPSK
Trigger: CTTCGAGGGCATCAACTTCAAGCGAAAGTTCTTGAC...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACGTGGGAGGAGGGCCATaGCTTGAATCTGTCCGAAGC +
Preference number: 5 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHVGGGP*LESVRS
Trigger: GCTTCGGACAGATTCAAGCAATGGCCCTCCTCCCAC...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACAGGTCTTCAGGAGGTaGGGCTCTGTCGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLQVFRR*GSVACC
Trigger: GCAGCAGGCGACAGAGCCCAACCTCCTGAAGACCTG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACAGGCTTTGTGGGGGTaGGCTGCCATTAGCCAAGGG +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRQALWG*AAISQG
Trigger: CCCTTGGCTAATGGCAGCCAACCCCCACAAAGCCTG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGTCCAGCCGGGGAGTTTaGTTTGGGGGAGGAACTGGA +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSSRGV*FGGGTG
Trigger: TCCAGTTCCTCCCCCAAACAAAACTCCCCGGCTGGA...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACTCCAGCCGGGGAGTTTaGTTTGGGGGAGGAACTGGA +
Preference number: 5 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHSSRGV*FGGGTG
Trigger: TCCAGTTCCTCCCCCAAACAAAACTCCCCGGCTGGA...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGGCTGCTCCCCAGGATaGTTCAGGTCCAGAACTCCA +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRGCSPG*FRSRTP
Trigger: TGGAGTTCTGGACCTGAACAATCCTGGGGAGCAGCC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTGGGAGGCCAGGAAGTaGAACATGTCAAAGGTACAC +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGWEARK*NMSKVH
Trigger: GTGTACCTTTGACATGTTCAACTTCCTGGCCTCCCA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGGGGTGAAGGCAGACTCCTGCCCCACTACATGCCCACATTCACCATGGACAGGTCTCCCGCATCGATGTaGCGTTTACAAAACAGACCT +
Preference number: 5 (lower is better)
Translates to: RGEGRLLPHYMPTFTMDRSPASM*RLQNRP
Trigger: AGGTCTGTTTTGTAAACGCAACATCGATGCGGGAGA...CCTGTCCATGGTGAATGTGGGCATGTAGTGGGGCAGGAGTCTGCCTTCACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp GATACTGAGACTAGGGAGCCACAGGCCAGGGTGAGATGGCAGCGGGCACGTGAGTCTTCCTCTTGCTTGTaGTTATCCTCATTGTCATCT +
Preference number: 5 (lower is better)
Translates to: DTETREPQARVRWQRARESSSCL*LSSLSS
Trigger: AGATGACAATGAGGATAACAACAAGCAAGAGGAAGA...CTCACGTGCCCGCTGCCATCTCACCCTGGCCTGTGGCTCCCTAGTCTCAGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGCCTCTTCCTTCTCCTaGGCTAGCATCGCTTCTTCC +
Preference number: 5 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGASSFS*ASIASS
Trigger: GGAAGAAGCGATGCTAGCCAAGGAGAAGGAAGAGGC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTCCACCTTTGGAGGTTaGGGAGGATCTTCATCCATA +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGSTFGG*GGSSSI
Trigger: TATGGATGAAGATCCTCCCAAACCTCCAAAGGTGGA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTTCCGAGCCTCTATCTaGTCACACTTCCGGTATACA +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGFRASI*SHFRYT
Trigger: TGTATACCGGAAGTGTGACAAGATAGAGGCTCGGAA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGAGTTCTTGCCTGGAGTaGCCCCACAGCTCTTACAGC +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRSSCLE*PHSSYS
Trigger: GCTGTAAGAGCTGTGGGGCAACTCCAGGCAAGAACT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATCGACATCCCAGTTCTaGCCTGGAGTTGCCCCACAG +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSTSQF*PGVAPQ
Trigger: CTGTGGGGCAACTCCAGGCAAGAACTGGGATGTCGA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGAGCAGCGTGTGCAAATaGGGCAGTAGTTCCCTTTTT +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGSSVCK*GSSSLF
Trigger: AAAAAGGGAACTACTGCCCAATTTGCACACGCTGCT...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAATGGGCCTGCCACCTTaGAGCTTAACAGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRMGLPP*SLTGPG
Trigger: TCCAGGGCCTGTTAAGCTCAAAGGTGGCAGGCCCAT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTGGCAGAAAACCTTCTaGTCATCCTGGAAGATGCAG +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGWQKTF*SSWKMQ
Trigger: CTGCATCTTCCAGGATGACAAGAAGGTTTTCTGCCA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGGGTGCCCAGGGAGTaGATTCTGATGGAGCCAATG +
Preference number: 5 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGRVPRE*ILMEPM
Trigger: CATTGGCTCCATCAGAATCAACTCCCTGGGCACCCT...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACATACAGGCGGGAGCATaGGTAGCCAATGGGGAAGAG +
Preference number: 5 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHIQAGA*VANGEE
Trigger: CTCTTCCCCATTGGCTACCAATGCTCCCGCCTGTAT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCAGGGTCTCCCGCATCGATGTaGCGTTTACAAAACAGACCT +
Preference number: 5 (lower is better)
Translates to: HGQEGRSEILRLGSHRPGSPASM*RLQNRP
Trigger: AGGTCTGTTTTGTAAACGCAACATCGATGCGGGAGA...CCCTGGCCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp CCAAATTTAGGTTTATCCAAGCAGTTGACACAAGAGCCACAGTCCTaGACACGCAAGCAACCCCGACAGTGCCCACAACGAGCCATTCTC +
Preference number: 5 (lower is better)
Translates to: PNLGLSKQLTQEPQS*TRKQPRQCPQRAIL
Trigger: GAGAATGGCTCGTTGTGGGCACTGTCGGGGTTGCTTGCGTGTGCAGGACTGTGGCTCTTGTGTCAACTGCTTGGATAAACCTAAATTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp TGGGGAGGTTGCAACAGGAGGTCGAACAATAGAAGCCTCCACCTTTaGAGGTTTGGGAGGATCTTCATCCATAAATCGCCGGGGTGTCTT +
Preference number: 5 (lower is better)
Translates to: WGGCNRRSNNRSLHL*RFGRIFIHKSPGCL
Trigger: AAGACACCCCGGCGATTTATGGATGAAGATCCTCCCAAACCTCCAAAGGTGGAGGCTTCTATTGTTCGACCTCCTGTTGCAACCTCCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 90 bp TGCAAATTGGGCAGTAGTTCCCTTTTTCATAGAGCTCGGTGCACCTaGGGCAGAGGCTGTAATCTCCAGACCACTCGACATCCCAGTTCT +
Preference number: 5 (lower is better)
Translates to: CKLGSSSLFHRARCT*GRGCNLQTTRHPSS
Trigger: AGAACTGGGATGTCGAGTGGTCTGGAGATTACAGCCTCTGCCCCAGGTGCACCGAGCTCTATGAAAAAGGGAACTACTGCCCAATTTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGGCCATTCTCATCTTCTaGCCATGGTGGGATGGCAGT +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRAILIF*PWWDGS
Trigger: ACTGCCATCCCACCATGGCAAGAAGATGAGAATGGC...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGCTCATGGAGGCCTTaGCTAGCACACAGCAGACAC +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSSWRP*LAHSRH
Trigger: GTGTCTGCTGTGTGCTAGCAAAGGCCTCCATGAGCT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCATTCCAGGAGGTGCTaGGACCCTCGGCCTTTGCGC +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKHSRRC*DPRPLR
Trigger: GCGCAAAGGCCGAGGGTCCAAGCACCTCCTGGAATG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAGTTCTTGCCTGGAGTaGCCCCACAGCTCTTACAGC +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSSCLE*PHSSYS
Trigger: GCTGTAAGAGCTGTGGGGCAACTCCAGGCAAGAACT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAATGGGCCTGCCACCTTaGAGCTTAACAGGCCCTGGA +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLMGLPP*SLTGPG
Trigger: TCCAGGGCCTGTTAAGCTCAAAGGTGGCAGGCCCAT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGCACTGGCTCCTCCCTaGGCCCCCAAGGGCGATACT +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGALAPP*APKGDT
Trigger: AGTATCGCCCTTGGGGGCCAAGGGAGGAGCCAGTGC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGACGCCGAGATCGCCTaGGGGGAGCTGGAAAGTCCG +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGDAEIA*GELESP
Trigger: CGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGTC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAAGGTGGATACCCTCTaGACACGAATGGCCTGGCGT +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRKVDTL*TRMAWR
Trigger: ACGCCAGGCCATTCGTGTCAAGAGGGTATCCACCTT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATCCAGCCGGGGAGTTTaGTTTGGGGGAGGAACTGGA +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSSRGV*FGGGTG
Trigger: TCCAGTTCCTCCCCCAAACAAAACTCCCCGGCTGGA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGCTCTTCCTCAGAGCTaGAGGCCTCGCCTGAATAGT +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRALPQS*RPRLNS
Trigger: ACTATTCAGGCGAGGCCTCAAGCTCTGAGGAAGAGC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006470.14
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGACACGAGAGAAGCAGTaGGGCTCACATGAGTGGTTG +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRTREKQ*GSHEWL
Trigger: CAACCACTCATGTGAGCCCAACTGCTTCTCTCGTGT...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp ACTCATTCCACTAAAGGAGAGATGCCTGAGCCGTGCATGCCCTCGTaGTTCTTGCACTTTCTCAATCAGAGTTCTCCATGCCACCTCCAA +
Preference number: 5 (lower is better)
Translates to: THSTKGEMPEPCMPS*FLHFLNQSSPCHLQ
Trigger: TTGGAGGTGGCATGGAGAACTCTGATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGGCTCAGGCATCTCTCCTTTAGTGGAATGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAGCCATTCTCATCTTCTaGCCATGGTGGGATGGCAGT +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRAILIF*PWWDGS
Trigger: ACTGCCATCCCACCATGGCAAGAAGATGAGAATGGC...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATTTCCAGTCCAGCCATaGGGAAAAGAGGCAAAGGGG +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRFPVQP*GKEAKG
Trigger: CCCCTTTGCCTCTTTTCCCAATGGCTGGACTGGAAA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAGCTCATGGAGGCCTTaGCTAGCACACAGCAGACAC +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSSWRP*LAHSRH
Trigger: GTGTCTGCTGTGTGCTAGCAAAGGCCTCCATGAGCT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCATTCCAGGAGGTGCTaGGACCCTCGGCCTTTGCGC +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGHSRRC*DPRPLR
Trigger: GCGCAAAGGCCGAGGGTCCAAGCACCTCCTGGAATG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGAAAAGCAGCTGGGTCCTaGCTCTGGAAAGCTGCTGAA +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRKAAGS*LWKAAE
Trigger: TTCAGCAGCTTTCCAGAGCAAGGACCCAGCTGCTTT...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCACATGAAGTGGAAGTaGCTGAGACATGAGGACAGG +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRHMKWK*LRHEDR
Trigger: CCTGTCCTCATGTCTCAGCAACTTCCACTTCATGTG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCAGGTCTTCAGGAGGTaGGGCTCTGTCGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGQVFRR*GSVACC
Trigger: GCAGCAGGCGACAGAGCCCAACCTCCTGAAGACCTG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp ACTTGGCATGCACCCAGTGGTCACACTGTGCACACTGCATCATCTTaGTCTCATAGTCATTGTCTTCATAGCAGCGTGTGCAAATTGGGC +
Preference number: 5 (lower is better)
Translates to: TWHAPSGHTVHTASS*SHSHCLHSSVCKLG
Trigger: GCCCAATTTGCACACGCTGCTATGAAGACAATGACTATGAGAGCAAGATGATGCAGTGTGCACAGTGTGACCACTGGGTGCATGCCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGAATCGCCGGGGTGTCTaGATAACACGGGAGGAGCGA +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKNRRGV*ITREER
Trigger: TCGCTCCTCCCGTGTTATCAAGACACCCCGGCGATT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGGGGTCACGATCTCCTaGCCATCTAGGAGGTCTGTG +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKGVTIS*PSRRSV
Trigger: CACAGACCTCCTAGATGGCAAGGAGATCGTGACCCC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGGTCAAGAACTTTCGCTaGAAGTTGATGCCCTCGAAG +
Preference number: 5 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGVKNFR*KLMPSK
Trigger: CTTCGAGGGCATCAACTTCAAGCGAAAGTTCTTGAC...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACACTTGCCCCAGCTTGTaGACAAGGATGATCTTGGAT +
Preference number: 5 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHTCPSL*TRMILD
Trigger: ATCCAAGATCATCCTTGTCAACAAGCTGGGGCAAGT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGGACCAGGTCCCTCCTaGCATTTCCAACTGCCAGCT +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGGPGPS*HFQLPA
Trigger: AGCTGGCAGTTGGAAATGCAAGGAGGGACCTGGTCC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp ATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAGGCCCATCTTCACTTTCTaGGCCTTGGAAACAAACTTG +
Preference number: 5 (lower is better)
Translates to: IHHGQEGRSEILRLGSHRPIFTF*ALETNL
Trigger: CAAGTTTGTTTCCAAGGCCAAGAAAGTGAAGATGGG...CCTGTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGATCCACCTTTGGAGGTTaGGGAGGATCTTCATCCATA +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRSTFGG*GGSSSI
Trigger: TATGGATGAAGATCCTCCCAAACCTCCAAAGGTGGA...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp CCACTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACACTGCTTCTTAGTGTaGGGACCCCCAAATTTAGGT +
Preference number: 5 (lower is better)
Translates to: PLHAHIHHGQEGRSEILRHCFLV*GPPNLG
Trigger: ACCTAAATTTGGGGGTCCCAACACTAAGAAGCAGTG...TCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGAGTTCTTGCCTGGAGTaGCCCCACAGCTCTTACAGC +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKSSCLE*PHSSYS
Trigger: GCTGTAAGAGCTGTGGGGCAACTCCAGGCAAGAACT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGTCGACATCCCAGTTCTaGCCTGGAGTTGCCCCACAG +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGSTSQF*PGVAPQ
Trigger: CTGTGGGGCAACTCCAGGCAAGAACTGGGATGTCGA...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGATACAGGCGGGAGCATaGGTAGCCAATGGGGAAGAG +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKIQAGA*VANGEE
Trigger: CTCTTCCCCATTGGCTACCAATGCTCCCGCCTGTAT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGAGCCACAATACTTGCCCCAGCTaGTTGACAAGGATGATCTTG +
Preference number: 5 (lower is better)
Translates to: HIHHGQEGRSEILRLGSHNTCPS*LTRMIL
Trigger: CAAGATCATCCTTGTCAACAAGCTGGGGCAAGTATT...GTGGCTCCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAGGGCATCTTCACAAATACTaGCCCCAGCTTGTTGACAAG +
Preference number: 5 (lower is better)
Translates to: HAHIHHGQEGRSEILRLGHLHKY*PQLVDK
Trigger: CTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGATG...CCCTAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATGGGAGGCCAGGAAGTaGAACATGTCAAAGGTACAC +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLWEARK*NMSKVH
Trigger: GTGTACCTTTGACATGTTCAACTTCCTGGCCTCCCA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGAAAGCAGCTGGGTCCTaGCTCTGGAAAGCTGCTGAA +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKKAAGS*LWKAAE
Trigger: TTCAGCAGCTTTCCAGAGCAAGGACCCAGCTGCTTT...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGCTCTGAGGAAGGGGTaGGGCTATGCACAATGGTCT +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGALRKG*GYAQWS
Trigger: AGACCATTGTGCATAGCCCAACCCCTTCCTCAGAGC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTATCTCCCGCATCGATGTaGCGTTTACAAAACAGACCT +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLSPASM*RLQNRP
Trigger: AGGTCTGTTTTGTAAACGCAACATCGATGCGGGAGA...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 90 bp CGCATCGATGTTGCGTTTACAAAACAGACCTCGTCCATGGATAGCTaGTCTGTAGACTCCCACAGCCTCTTTGGATGTCTTTTTGAGATG +
Preference number: 5 (lower is better)
Translates to: RIDVAFTKQTSSMDS*SVDSHSLFGCLFEM
Trigger: CATCTCAAAAAGACATCCAAAGAGGCTGTGGGAGTCTACAGATCAGCTATCCATGGACGAGGTCTGTTTTGTAAACGCAACATCGATGCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 90 bp ACTGCATCATCTTGCTCTCATAGTCATTGTCTTCATAGCAGCGTGTaGAAATTGGGCAGTAGTTCCCTTTTTCATAGAGCTCGGTGCACC +
Preference number: 5 (lower is better)
Translates to: TASSCSHSHCLHSSV*KLGSSSLFHRARCT
Trigger: GGTGCACCGAGCTCTATGAAAAAGGGAACTACTGCCCAATTTGCACACGCTGCTATGAAGACAATGACTATGAGAGCAAGATGATGCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTACCCATCTTCACTTTCTaGGCCTTGGAAACAAACTTG +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLPIFTF*ALETNL
Trigger: CAAGTTTGTTTCCAAGGCCAAGAAAGTGAAGATGGG...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp CTACATGCCCACATTCACCATGGACAGGAAGGTAGGAGTGAGATACTGAGACTAAATACTTGCCCCAGCTaGTTGACAAGGATGATCTTG +
Preference number: 5 (lower is better)
Translates to: LHAHIHHGQEGRSEILRLNTCPS*LTRMIL
Trigger: CAAGATCATCCTTGTCAACAAGCTGGGGCAAGTATT...TAGTCTCAGTATCTCACTCCTACCTTCCTGTCCATGGTGAATGTGGGCATGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGACACGAGAGAAGCAGTaGGGCTCACATGAGTGGTTG +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGTREKQ*GSHEWL
Trigger: CAACCACTCATGTGAGCCCAACTGCTTCTCTCGTGT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 90 bp CAGGGAGTTGATTCTGATGGAGCCAATGAGTACATTGATGACATCTaGTTCAAGTCCAGTCAAGAACTTTCGCTTGAAGTTGATGCCCTC +
Preference number: 5 (lower is better)
Translates to: QGVDSDGANEYIDDI*FKSSQELSLEVDAL
Trigger: GAGGGCATCAACTTCAAGCGAAAGTTCTTGACTGGACTTGAACCAGATGTCATCAATGTACTCATTGGCTCCATCAGAATCAACTCCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGGCCTTGGAAACAAACTaGATCATAAGGGGAAGTCCG +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKALETN*IIRGSP
Trigger: CGGACTTCCCCTTATGATCAAGTTTGTTTCCAAGGC...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp AGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAAGCGCCACTTTCTGCTGTaGCTGTTGATCGATCTTGAA +
Preference number: 5 (lower is better)
Translates to: RRDLETFVQYLHPGSPGKRHFLL*LLIDLE
Trigger: TTCAAGATCGATCAACAGCAACAGCAGAAAGTGGCG...CTTCCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCACATGAAGTGGAAGTaGCTGAGACATGAGGACAGG +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGHMKWK*LRHEDR
Trigger: CCTGTCCTCATGTCTCAGCAACTTCCACTTCATGTG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGTATCTGAGGAAGGGGTaGGGCTATGCACAATGGTCT +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGYLRKG*GYAQWS
Trigger: AGACCATTGTGCATAGCCCAACCCCTTCCTCAGATA...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108154.9
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCGCCACTTTCTGCTGTaGCTGTTGATCGATCTTGAA +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGRHFLL*LLIDLE
Trigger: TTCAAGATCGATCAACAGCAACAGCAGAAAGTGGCG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGAACTTTCGCTTGAAGTaGATGCCCTCGAAGTCCACA +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGNFRLK*MPSKST
Trigger: TGTGGACTTCGAGGGCATCAACTTCAAGCGAAAGTT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGGTCAAGAACTTTCGCTaGAAGTTGATGCCCTCGAAG +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGVKNFR*KLMPSK
Trigger: CTTCGAGGGCATCAACTTCAAGCGAAAGTTCTTGAC...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGACTTGCCCCAGCTTGTaGACAAGGATGATCTTGGAT +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGTCPSL*TRMILD
Trigger: ATCCAAGATCATCCTTGTCAACAAGCTGGGGCAAGT...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS-3UTR CAA 90 bp AAAAGAAGGGATTTAGAAACCTTTGTACAATATCTACATCCTGGGTCCCCAGGGCATCTTCACAAATACTaGCCCCAGCTTGTTGACAAG +
Preference number: 5 (lower is better)
Translates to: KRRDLETFVQYLHPGSPGHLHKY*PQLVDK
Trigger: CTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGATG...CCCTGGGGACCCAGGATGTAGATATTGTACAAAGGTTTCTAAATCCCTTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp CGTCGGGCTGACTTGCGCTGCAGTAGGAGGGAGTCCTaGTCCTCGGGCCCGGGAGTGGCCCCCACCTCCTCC +
Preference number: 6 (lower is better)
Translates to: RRADLRCSRRES*SSGPGVAPTSS
Trigger: GGAGGAGGTGGGGGCCACTCCCGGGCCCGAGGAGCAGGACTCCCTCCTACTGCAGCGCAAGTCAGCCCGACG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp TGGCGAGGTCCTGCCGATCCCGGAGAGGGAGGGCACTaGGGCGGGGTACATCTTCAGGCACCATGGCCCGAG +
Preference number: 6 (lower is better)
Translates to: WRGPADPGEGGH*GGVHLQAPWPE
Trigger: CTCGGGCCATGGTGCCTGAAGATGTACCCCGCCTCAGTGCCCTCCCTCTCCGGGATCGGCAGGACCTCGCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp TCCAGGCGCCTTCGGGCCTTGAGCTGCAACACAGGCTaGAGGGTGGGTTTGCGGGGCCGGCTCTGCTCCTCA +
Preference number: 6 (lower is better)
Translates to: SRRLRALSCNTG*RVGLRGRLCSS
Trigger: TGAGGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCCTGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp AGTGGCGCCGTCTACGCGTGGCCCGGGTTGGGTAGCTaGGTCCCAGGCAGGCTGGGTGGTAAGCATGACGAC +
Preference number: 6 (lower is better)
Translates to: SGAVYAWPGLGS*VPGRLGGKHDD
Trigger: GTCGTCATGCTTACCACCCAGCCTGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGTAGACGGCGCCACT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp ACAGATCCAGTGGCGCCGTCTACGCGTGGCCCGGGTTaGGTAGCTGGGTCCCAGGCAGGCTGGGTGGTAAGC +
Preference number: 6 (lower is better)
Translates to: TDPVAPSTRGPG*VAGSQAGWVVS
Trigger: GCTTACCACCCAGCCTGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGTAGACGGCGCCACTGGATCTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp CACAGGCTGAACAGATCCAGTGGCGCCGTCTACGCGTaGCCCGGGTTGGGTAGCTGGGTCCCAGGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: HRLNRSSGAVYA*PGLGSWVPGRL
Trigger: CAGCCTGCCTGGGACCCAGCTACCCAACCCGGGCCACGCGTAGACGGCGCCACTGGATCTGTTCAGCCTGTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp AGGGGAAGTTCTGAGAGGAGAGGAGGTCCTCCGGGATaGTGGTGGCCTGGTGGCCAGGGGGCTAGGACGCCG +
Preference number: 6 (lower is better)
Translates to: RGSSERRGGPPG*WWPGGQGARTP
Trigger: CGGCGTCCTAGCCCCCTGGCCACCAGGCCACCACCATCCCGGAGGACCTCCTCTCCTCTCAGAACTTCCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp CGGTCCTGGGGGCGCCCAGGGCTTTCCTCCTCAGGCTaGTCCCCAGGATTGTTCAGGTCCAGAACTCCACGG +
Preference number: 6 (lower is better)
Translates to: RSWGRPGLSSSG*SPGLFRSRTPR
Trigger: CCGTGGAGTTCTGGACCTGAACAATCCTGGGGAGCAGCCTGAGGAGGAAAGCCCTGGGCGCCCCCAGGACCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp CTCCACGGCCTCCTCTCCCAGGCTGTCCTCCACGTTTaGGGGTTCCAGGTCCTGGACCAGGTCCCTCCTTGC +
Preference number: 6 (lower is better)
Translates to: LHGLLSQAVLHV*GFQVLDQVPPC
Trigger: GCAAGGAGGGACCTGGTCCAGGACCTGGAACCCCCAAACGTGGAGGACAGCCTGGGAGAGGAGGCCGTGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp CCTGGTGGCCAGGGGGCTAGGACGCCGAGATCGCCTTaGGGGAGCTGGAAAGTCCGAGTCTCCCACAGTAGG +
Preference number: 6 (lower is better)
Translates to: PGGQGARTPRSP*GSWKVRVSHSR
Trigger: CCTACTGTGGGAGACTCGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGTCCTAGCCCCCTGGCCACCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp AGTTCTGAGAGGAGAGGAGGTCCTCCGGGATGGTGGTaGCCTGGTGGCCAGGGGGCTAGGACGCCGAGATCG +
Preference number: 6 (lower is better)
Translates to: SSERRGGPPGWW*PGGQGARTPRS
Trigger: CGATCTCGGCGTCCTAGCCCCCTGGCCACCAGGCCACCACCATCCCGGAGGACCTCCTCTCCTCTCAGAACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GGAGCTTCTGCAAGTGGCAGCAAAGGACACCGGTCCTaGGGGCGCCCAGGGCTTTCCTCCTCAGGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: GASASGSKGHRS*GRPGLSSSGCS
Trigger: GGAGCAGCCTGAGGAGGAAAGCCCTGGGCGCCCCCAGGACCGGTGTCCTTTGCTGCCACTTGCAGAAGCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GGAACCATCGAGGGCCTGGGAAGGAGCTTCTGCAAGTaGCAGCAAAGGACACCGGTCCTGGGGGCGCCCAGG +
Preference number: 6 (lower is better)
Translates to: GTIEGLGRSFCK*QQRTPVLGAPR
Trigger: CCTGGGCGCCCCCAGGACCGGTGTCCTTTGCTGCCACTTGCAGAAGCTCCTTCCCAGGCCCTCGATGGTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CCTCCACGGCCTCCTCTCCCAGGCTGTCCTCCACGTTaGGGGGTTCCAGGTCCTGGACCAGGTCCCTCCTTG +
Preference number: 6 (lower is better)
Translates to: PPRPPLPGCPPR*GVPGPGPGPSL
Trigger: CAAGGAGGGACCTGGTCCAGGACCTGGAACCCCCAAACGTGGAGGACAGCCTGGGAGAGGAGGCCGTGGAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 72 bp AAAGCATCCTTGTCCAGGCGCCTTCGGGCCTTGAGCTaGAACACAGGCTGCAGGGTGGGTTTGCGGGGCCGG +
Preference number: 6 (lower is better)
Translates to: KASLSRRLRALS*NTGCRVGLRGR
Trigger: CCGGCCCCGCAAACCCACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCCTGGACAAGGATGCTTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp TCTGGTCCTGACCGAGCAGCTTCCCTCTCTGCCCGCTaGCTAGGAGTCAGGGGAGGCCTGCCCCTCTTCCTA +
Preference number: 6 (lower is better)
Translates to: SGPDRAASLSAR*LGVRGGLPLFL
Trigger: TAGGAAGAGGGGCAGGCCTCCCCTGACTCCTAGCCAGCGGGCAGAGAGGGAAGCTGCTCGGTCAGGACCAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS TCA 72 bp AGGGTTTGGAGTGGGAGAAAGGGTGCCCTCTGGTCCTaGCCGAGCAGCTTCCCTCTCTGCCCGCTGGCTAGG +
Preference number: 6 (lower is better)
Translates to: RVWSGRKGALWS*PSSFPLCPLAR
Trigger: CCTAGCCAGCGGGCAGAGAGGGAAGCTGCTCGGTCAGGACCAGAGGGCACCCTTTCTCCCACTCCAAACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 72 bp TTGGGGTGCTTGGGACCGCCGGAGAAGTTCAGTCAGTaGCTGCACCATCCGTTCTGTGCCCTCCTCACCCCG +
Preference number: 6 (lower is better)
Translates to: LGCLGPPEKFSQ*LHHPFCALLTP
Trigger: CGGGGTGAGGAGGGCACAGAACGGATGGTGCAGGCACTGACTGAACTTCTCCGGCGGTCCCAAGCACCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 72 bp GTGATTGGTCCGCCCCACTGCCCTAGGCTCAGGCTCTaGTGGAGAGTCATCAGCAGGAGGCAGCTCTGGCTC +
Preference number: 6 (lower is better)
Translates to: VIGPPHCPRLRL*WRVISRRQLWL
Trigger: GAGCCAGAGCTGCCTCCTGCTGATGACTCTCCAGCAGAGCCTGAGCCTAGGGCAGTGGGGCGGACCAATCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 72 bp TCTGATGCTGATGACGTATCCTCAGTGGCGAGGTCCTaGCGATCCCGGAGAGGGAGGGCACTGAGGCGGGGT +
Preference number: 6 (lower is better)
Translates to: SDADDVSSVARS*RSRRGRALRRG
Trigger: ACCCCGCCTCAGTGCCCTCCCTCTCCGGGATCGGCAGGACCTCGCCACTGAGGATACGTCATCAGCATCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp GCCTCGCTGTCTGTGCCATCATCCACTCCGTCCAGCTaGTCGATTCGGGGAGCTCCAGCAAGGGAACTGGGG +
Preference number: 6 (lower is better)
Translates to: ASLSVPSSTPSS*SIRGAPARELG
Trigger: CCCCAGTTCCCTTGCTGGAGCTCCCCGAATCGAGCAGCTGGACGGAGTGGATGATGGCACAGACAGCGAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp CCCGGGGTTGTTGGACAGCCTCAGCCTCGCTGTCTGTaGCATCATCCACTCCGTCCAGCTGCTCGATTCGGG +
Preference number: 6 (lower is better)
Translates to: PGVVGQPQPRCL*HHPLRPAARFG
Trigger: CCCGAATCGAGCAGCTGGACGGAGTGGATGATGGCACAGACAGCGAGGCTGAGGCTGTCCAACAACCCCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp ATTGGTCCGCCCCACTGCCCTAGGCTCAGGCTCTGCTaGAGAGTCATCAGCAGGAGGCAGCTCTGGCTCAGG +
Preference number: 6 (lower is better)
Translates to: IGPPHCPRLRLC*RVISRRQLWLR
Trigger: CCTGAGCCAGAGCTGCCTCCTGCTGATGACTCTCCAGCAGAGCCTGAGCCTAGGGCAGTGGGGCGGACCAAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp CGTGGCCCGGGTTGGGTAGCTGGGTCCCAGGCAGGCTaGGTGGTAAGCATGACGACAGCGTTCACATTCCAG +
Preference number: 6 (lower is better)
Translates to: RGPGWVAGSQAG*VVSMTTAFTFQ
Trigger: CTGGAATGTGAACGCTGTCGTCATGCTTACCACCCAGCCTGCCTGGGACCCAGCTACCCAACCCGGGCCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp CAGGGGGCTAGGACGCCGAGATCGCCTTGGGGGAGCTaGAAAGTCCGAGTCTCCCACAGTAGGGATGTGGTG +
Preference number: 6 (lower is better)
Translates to: QGARTPRSPWGS*KVRVSHSRDVV
Trigger: CACCACATCCCTACTGTGGGAGACTCGGACTTTCCAGCTCCCCCAAGGCGATCTCGGCGTCCTAGCCCCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp GGGGCTAAAGCATCCTTGTCCAGGCGCCTTCGGGCCTaGAGCTGCAACACAGGCTGCAGGGTGGGTTTGCGG +
Preference number: 6 (lower is better)
Translates to: GAKASLSRRLRA*SCNTGCRVGLR
Trigger: CCGCAAACCCACCCTGCAGCCTGTGTTGCAGCTCAAGGCCCGAAGGCGCCTGGACAAGGATGCTTTAGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 90 bp CGCAAGCAACCCCGACAGTGCCCACAACGAGCCATTCTCATCTTCTaGCCATGGTGGGATGGCAGTGACCGCCGTGGTGTGTGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: RKQPRQCPQRAILIF*PWWDGSDRRGVWAR
Trigger: CCTGGCCCACACACCACGGCGGTCACTGCCATCCCACCATGGCAAGAAGATGAGAATGGCTCGTTGTGGGCACTGTCGGGGTTGCTTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp CTGGTGACCACAGGGACAAAGCGAGGCAAGCTGAGGTaGTTGGTCCGCCCCACTGCCCTAGGCTCAGGCTCT +
Preference number: 6 (lower is better)
Translates to: LVTTGTKRGKLR*LVRPTALGSGS
Trigger: AGAGCCTGAGCCTAGGGCAGTGGGGCGGACCAATCACCTCAGCTTGCCTCGCTTTGTCCCTGTGGTCACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS TCA 72 bp TTGTGGGGGTTGGCTGCCATTAGCCAAGGGAGGTGCTaGAGGAAGAGAGTCCTCTCTGGGGCCAGCAGCCCC +
Preference number: 6 (lower is better)
Translates to: LWGLAAISQGRC*RKRVLSGASSP
Trigger: GGGGCTGCTGGCCCCAGAGAGGACTCTCTTCCTTCAGCACCTCCCTTGGCTAATGGCAGCCAACCCCCACAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp GGTGCTTGGGACCGCCGGAGAAGTTCAGTCAGTGCCTaGACCATCCGTTCTGTGCCCTCCTCACCCCGTTTC +
Preference number: 6 (lower is better)
Translates to: GAWDRRRSSVSA*TIRSVPSSPRF
Trigger: GAAACGGGGTGAGGAGGGCACAGAACGGATGGTGCAGGCACTGACTGAACTTCTCCGGCGGTCCCAAGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp CCCAGGCTGTCCTCCACGTTTGGGGGTTCCAGGTCCTaGACCAGGTCCCTCCTTGCATTTCCAACTGCCAGC +
Preference number: 6 (lower is better)
Translates to: PRLSSTFGGSRS*TRSLLAFPTAS
Trigger: GCTGGCAGTTGGAAATGCAAGGAGGGACCTGGTCCAGGACCTGGAACCCCCAAACGTGGAGGACAGCCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp GGGAGTTGGGACACGAGGTGGAGAGGAGACTGGTACTaGTTCCTGGGGAGCAGGTGGGGAGGTTGCAACAGG +
Preference number: 6 (lower is better)
Translates to: GSWDTRWRGDWY*FLGSRWGGCNR
Trigger: CCTGTTGCAACCTCCCCACCTGCTCCCCAGGAACCAGTACCAGTCTCCTCTCCACCTCGTGTCCCAACTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp GCTCCTCAGGTTCTAGTACTGGCAGCTCATGTTCTCTaGGGGTGCGACGTCTTGGAGCAGGAGGACCCCCGG +
Preference number: 6 (lower is better)
Translates to: APQVLVLAAHVL*GCDVLEQEDPR
Trigger: CCGGGGGTCCTCCTGCTCCAAGACGTCGCACCCCCAGAGAACATGAGCTGCCAGTACTAGAACCTGAGGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp TCCAGGGAGCCAAGCAAATGTTCGGGTGGGGTCAGCTaGGCTAGTGGACAGGCTTTGTGGGGGTTGGCTGCC +
Preference number: 6 (lower is better)
Translates to: SREPSKCSGGVS*ASGQALWGLAA
Trigger: GGCAGCCAACCCCCACAAAGCCTGTCCACTAGCCCAGCTGACCCCACCCGAACATTTGCTTGGCTCCCTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp CCAGGGAGCTGCTCTGCCAGGAAGATGACAGCATCGTaGTGGATGCCCAGGAGCCGCGCTCCACTCATTCCA +
Preference number: 6 (lower is better)
Translates to: PGSCSARKMTAS*WMPRSRAPLIP
Trigger: TGGAATGAGTGGAGCGCGGCTCCTGGGCATCCACCACGATGCTGTCATCTTCCTGGCAGAGCAGCTCCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp GTACTGGCAGCTCATGTTCTCTGGGGGTGCGACGTCTaGGAGCAGGAGGACCCCCGGGCTCTGAGTCATCTG +
Preference number: 6 (lower is better)
Translates to: VLAAHVLWGCDV*EQEDPRALSHL
Trigger: CAGATGACTCAGAGCCCGGGGGTCCTCCTGCTCCAAGACGTCGCACCCCCAGAGAACATGAGCTGCCAGTAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CACACTGGGTGCACAGCAGCAATGGGCCTGCCACCTTaGAGCTTAACAGGCCCTGGAGCACCTGACGCAGGC +
Preference number: 6 (lower is better)
Translates to: HTGCTAAMGLPP*SLTGPGAPDAG
Trigger: GCCTGCGTCAGGTGCTCCAGGGCCTGTTAAGCTCAAAGGTGGCAGGCCCATTGCTGCTGTGCACCCAGTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp GACCCAAGGCCACAGCAGCGTGACGGCAGACATGTTTaGTTCGGGGGCCTTGTAAAGGTGACTCAGGGCCCG +
Preference number: 6 (lower is better)
Translates to: DPRPQQRDGRHV*FGGLVKVTQGP
Trigger: CGGGCCCTGAGTCACCTTTACAAGGCCCCCGAATCAAACATGTCTGCCGTCACGCTGCTGTGGCCTTGGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp CTAAGGGCCTCCGAGACGGTGAGTAGTTGGGCACTTTaGTTCGAGCCCCTGAGAAGGAGCGAGGGGTGGGAG +
Preference number: 6 (lower is better)
Translates to: LRASETVSSWAL*FEPLRRSEGWE
Trigger: CTCCCACCCCTCGCTCCTTCTCAGGGGCTCGAATCAAAGTGCCCAACTACTCACCGTCTCGGAGGCCCTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp GTGTGTTGTGGTGATGGAGGTGGCTGCGCTTGTGGTTaGTGTGGTGGTAGTGCCTGGGGTAGGAGCTGGGTC +
Preference number: 6 (lower is better)
Translates to: VCCGDGGGCACG*CGGSAWGRSWV
Trigger: GACCCAGCTCCTACCCCAGGCACTACCACCACAGCAACCACAAGCGCAGCCACCTCCATCACCACAACACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp GGCACCGATACCAGCAGCGCCTCCGAGCATCCACTGTaGTCCAATACAGGCGGGAGCATTGGTAGCCAATGG +
Preference number: 6 (lower is better)
Translates to: GTDTSSASEHPL*SNTGGSIGSQW
Trigger: CCATTGGCTACCAATGCTCCCGCCTGTATTGGAGCACAGTGGATGCTCGGAGGCGCTGCTGGTATCGGTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp AGGCTCTGCTGGAGAGTCATCAGCAGGAGGCAGCTCTaGCTCAGGGGTTTCAAGAGCCCCAAGAGGAGGAGG +
Preference number: 6 (lower is better)
Translates to: RLCWRVISRRQL*LRGFKSPKRRR
Trigger: CCTCCTCCTCTTGGGGCTCTTGAAACCCCTGAGCCAGAGCTGCCTCCTGCTGATGACTCTCCAGCAGAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp CAGTGCCCACAACGAGCCATTCTCATCTTCTTGCCATaGTGGGATGGCAGTGACCGCCGTGGTGTGTGGGCC +
Preference number: 6 (lower is better)
Translates to: QCPQRAILIFLP*WDGSDRRGVWA
Trigger: GGCCCACACACCACGGCGGTCACTGCCATCCCACCATGGCAAGAAGATGAGAATGGCTCGTTGTGGGCACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp AGGTGCTTGGACCCTCGGCCTTTGCGCCCACAAACATaGCAGAACTTGCAGCGCCTGCAGCACCAGGTGTCA +
Preference number: 6 (lower is better)
Translates to: RCLDPRPLRPQT*QNLQRLQHQVS
Trigger: TGACACCTGGTGCTGCAGGCGCTGCAAGTTCTGCCATGTTTGTGGGCGCAAAGGCCGAGGGTCCAAGCACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp TTCTGGAGCAGGACCCAGACTCAATACCCGGACCCCTaGAGCTCCAGGGAGCCAAGCAAATGTTCGGGTGGG +
Preference number: 6 (lower is better)
Translates to: FWSRTQTQYPDP*SSREPSKCSGG
Trigger: CCCACCCGAACATTTGCTTGGCTCCCTGGAGCTCCAGGGGTCCGGGTATTGAGTCTGGGTCCTGCTCCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CCCCGACAGTGCCCACAACGAGCCATTCTCATCTTCTaGCCATGGTGGGATGGCAGTGACCGCCGTGGTGTG +
Preference number: 6 (lower is better)
Translates to: PRQCPQRAILIF*PWWDGSDRRGV
Trigger: CACACCACGGCGGTCACTGCCATCCCACCATGGCAAGAAGATGAGAATGGCTCGTTGTGGGCACTGTCGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp CTGAGTCCTCGAAGACATCATAGGAGGGCCGCTGTTTaGCGCAGCGTCGGGCTGACTTGCGCTGCAGTAGGA +
Preference number: 6 (lower is better)
Translates to: LSPRRHHRRAAV*RSVGLTCAAVG
Trigger: TCCTACTGCAGCGCAAGTCAGCCCGACGCTGCGTCAAACAGCGGCCCTCCTATGATGTCTTCGAGGACTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp ATTGTCACAGCCGCTTCTGCTAACACTACTGCTTGCTaGTTTTTCCGGCAGGGACCGGCTGGCCGTCCTGGG +
Preference number: 6 (lower is better)
Translates to: IVTAASANTTAC*FFRQGPAGRPG
Trigger: CCCAGGACGGCCAGCCGGTCCCTGCCGGAAAAAGCAGCAAGCAGTAGTGTTAGCAGAAGCGGCTGTGACAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 72 bp AACACAGGCTGCAGGGTGGGTTTGCGGGGCCGGCTCTaGTCCTCAGGTTCTAGTACTGGCAGCTCATGTTCT +
Preference number: 6 (lower is better)
Translates to: NTGCRVGLRGRL*SSGSSTGSSCS
Trigger: AGAACATGAGCTGCCAGTACTAGAACCTGAGGAGCAGAGCCGGCCCCGCAAACCCACCCTGCAGCCTGTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp GTTCACATTCCAGGAGGTGCTTGGACCCTCGGCCTTTaGGCCCACAAACATGGCAGAACTTGCAGCGCCTGC +
Preference number: 6 (lower is better)
Translates to: VHIPGGAWTLGL*AHKHGRTCSAC
Trigger: GCAGGCGCTGCAAGTTCTGCCATGTTTGTGGGCGCAAAGGCCGAGGGTCCAAGCACCTCCTGGAATGTGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GGAGCTGGAAAGTCCGAGTCTCCCACAGTAGGGATGTaGTGGGTCAGGGAAGATGGACTTCCTGGAGAGGGC +
Preference number: 6 (lower is better)
Translates to: GAGKSESPTVGM*WVREDGLPGEG
Trigger: GCCCTCTCCAGGAAGTCCATCTTCCCTGACCCACCACATCCCTACTGTGGGAGACTCGGACTTTCCAGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CGTTCACATTCCAGGAGGTGCTTGGACCCTCGGCCTTaGCGCCCACAAACATGGCAGAACTTGCAGCGCCTG +
Preference number: 6 (lower is better)
Translates to: RSHSRRCLDPRP*RPQTWQNLQRL
Trigger: CAGGCGCTGCAAGTTCTGCCATGTTTGTGGGCGCAAAGGCCGAGGGTCCAAGCACCTCCTGGAATGTGAACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 90 bp CCAGGTCCTGGACCAGGTCCCTCCTTGCATTTCCAACTGCCAGCTTaGTTCTTTACTGGAACCACAGGGGGCGGAGGCTCGGGTTTAGGG +
Preference number: 6 (lower is better)
Translates to: PGPGPGPSLHFQLPA*FFTGTTGGGGSGLG
Trigger: CCCTAAACCCGAGCCTCCGCCCCCTGTGGTTCCAGTAAAGAACAAAGCTGGCAGTTGGAAATGCAAGGAGGGACCTGGTCCAGGACCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 72 bp GAGCCACAGTCCTGCACACGCAAGCAACCCCGACAGTaGCCACAACGAGCCATTCTCATCTTCTTGCCATGG +
Preference number: 6 (lower is better)
Translates to: EPQSCTRKQPRQ*PQRAILIFLPW
Trigger: CCATGGCAAGAAGATGAGAATGGCTCGTTGTGGGCACTGTCGGGGTTGCTTGCGTGTGCAGGACTGTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp CTTGAGGCAGAGCTCACAGCGCATCTGCCTTCCACGTaGAACAGCAGCATGGACGTTCTTGAGGGAGCCATC +
Preference number: 6 (lower is better)
Translates to: LEAELTAHLPST*NSSMDVLEGAI
Trigger: GATGGCTCCCTCAAGAACGTCCATGCTGCTGTTGCACGTGGAAGGCAGATGCGCTGTGAGCTCTGCCTCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp AGGAGCCGCGCTCCACTCATTCCACTAAAGGAGAGATaGCTGAGCCGTGCATGCCCTCGTGCTTCTTGCACT +
Preference number: 6 (lower is better)
Translates to: RSRAPLIPLKER*LSRACPRASCT
Trigger: AGTGCAAGAAGCACGAGGGCATGCACGGCTCAGGCATCTCTCCTTTAGTGGAATGAGTGGAGCGCGGCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GACCTCGCTGGGACCGAAGCGCAGAGCGCAGGGAACTaGGGGCCACATCTTCATCTGAATGAAAACCCTGAA +
Preference number: 6 (lower is better)
Translates to: DLAGTEAQSAGN*GPHLHLNENPE
Trigger: TTCAGGGTTTTCATTCAGATGAAGATGTGGCCCCCAGTTCCCTGCGCTCTGCGCTTCGGTCCCAGCGAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp GCAGACTCTAGCAGCTTCAGTAGGAGTCCTTTCATCTaGCTTCCAGCCCGGCGCTCTGGGGTCTCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: ADSSSFSRSPFI*LPARRSGVSPS
Trigger: AGAAGGAGAGACCCCAGAGCGCCGGGCTGGAAGCCAGATGAAAGGACTCCTACTGAAGCTGCTAGAGTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GGCAGCCGTGTACTCCGTCGCCAGTACTTAGGATCATaGGCGTCAAACCAGCAGAACGCAGACTCTAGCAGC +
Preference number: 6 (lower is better)
Translates to: GSRVLRRQYLGS*ASNQQNADSSS
Trigger: GCTGCTAGAGTCTGCGTTCTGCTGGTTTGACGCCCATGATCCTAAGTACTGGCGACGGAGTACACGGCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GGATGGAGGCAACACAGCATTGGGGAGCACTCCGTTTaGCAGCCGTGTACTCCGTCGCCAGTACTTAGGATC +
Preference number: 6 (lower is better)
Translates to: GWRQHSIGEHSV*QPCTPSPVLRI
Trigger: GATCCTAAGTACTGGCGACGGAGTACACGGCTGCCAAACGGAGTGCTCCCCAATGCTGTGTTGCCTCCATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp TCATCACAGGTGGCTCCCTCGGGGAGCACACGGTGCTaGGAGGCCAGGAAGTTGAACATGTCAAAGGTACAC +
Preference number: 6 (lower is better)
Translates to: SSQVAPSGSTRC*EARKLNMSKVH
Trigger: GTGTACCTTTGACATGTTCAACTTCCTGGCCTCCCAGCACCGTGTGCTCCCCGAGGGAGCCACCTGTGATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp GGACCAGGTCCCTCCTTGCATTTCCAACTGCCAGCTTaGTTCTTTACTGGAACCACAGGGGGCGGAGGCTCG +
Preference number: 6 (lower is better)
Translates to: GPGPSLHFQLPA*FFTGTTGGGGS
Trigger: CGAGCCTCCGCCCCCTGTGGTTCCAGTAAAGAACAAAGCTGGCAGTTGGAAATGCAAGGAGGGACCTGGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 72 bp CTGAGAAGGAGCGAGGGGTGGGAGGAGGGCCATTGCTaGAATCTGTCCGAAGCGGGGGATCCAGATTCTGAA +
Preference number: 6 (lower is better)
Translates to: LRRSEGWEEGHC*NLSEAGDPDSE
Trigger: TTCAGAATCTGGATCCCCCGCTTCGGACAGATTCAAGCAATGGCCCTCCTCCCACCCCTCGCTCCTTCTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 90 bp GAGGTGGTGAAGGGACTGGAGGAGTCAAGGGTGGTGACGGAAGCTTaGCCTCTTCCTTCTCCTTGGCTAGCATCGCTTCTTCCTCAGCCA +
Preference number: 6 (lower is better)
Translates to: EVVKGLEESRVVTEA*PLPSPWLASLLPQP
Trigger: TGGCTGAGGAAGAAGCGATGCTAGCCAAGGAGAAGGAAGAGGCAAAGCTTCCGTCACCACCCTTGACTCCTCCAGTCCCTTCACCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 90 bp TCAAAGCGCAGGTGTGGACCAACCCGTTTGGGGACCTGGTTTTCTTaGTCCTCTGGAGATGGAGGCTCTTCCTCAGAGCTTGAGGCCTCG +
Preference number: 6 (lower is better)
Translates to: SKRRCGPTRLGTWFS*SSGDGGSSSELEAS
Trigger: CGAGGCCTCAAGCTCTGAGGAAGAGCCTCCATCTCCAGAGGACAAAGAAAACCAGGTCCCCAAACGGGTTGGTCCACACCTGCGCTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp GCTTCCAGCCCGGCGCTCTGGGGTCTCTCCTTCTTCTaGATGCCTCATCAAGATGGCCACTACGTCTTCCAT +
Preference number: 6 (lower is better)
Translates to: ASSPALWGLSFF*MPHQDGHYVFH
Trigger: ATGGAAGACGTAGTGGCCATCTTGATGAGGCATTCAGAAGAAGGAGAGACCCCAGAGCGCCGGGCTGGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp GAGACAGAGTGCACACTGACGAGGGTCATCCAGGTGTaGGAAAGCAGCTGGGTCCTTGCTCTGGAAAGCTGC +
Preference number: 6 (lower is better)
Translates to: ETECTLTRVIQV*ESSWVLALESC
Trigger: GCAGCTTTCCAGAGCAAGGACCCAGCTGCTTTCTCACACCTGGATGACCCTCGTCAGTGTGCACTCTGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp CCAGCCCGGCGCTCTGGGGTCTCTCCTTCTTCTGAATaGCTCATCAAGATGGCCACTACGTCTTCCATGAAG +
Preference number: 6 (lower is better)
Translates to: PARRSGVSPSSE*LIKMATTSSMK
Trigger: CTTCATGGAAGACGTAGTGGCCATCTTGATGAGGCATTCAGAAGAAGGAGAGACCCCAGAGCGCCGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp TTGCTCTGGAAAGCTGCTGAAGGATCCCCTGGAGGCTaGCCCGATTCTGGGGTCTCTGATTCCTGTTGTCTC +
Preference number: 6 (lower is better)
Translates to: LLWKAAEGSPGG*PDSGVSDSCCL
Trigger: GAGACAACAGGAATCAGAGACCCCAGAATCGGGGCAGCCTCCAGGGGATCCTTCAGCAGCTTTCCAGAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp TCTTCATCACAGGTGGCTCCCTCGGGGAGCACACGGTaGTGGGAGGCCAGGAAGTTGAACATGTCAAAGGTA +
Preference number: 6 (lower is better)
Translates to: SSSQVAPSGSTR*WEARKLNMSKV
Trigger: TACCTTTGACATGTTCAACTTCCTGGCCTCCCAGCACCGTGTGCTCCCCGAGGGAGCCACCTGTGATGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp TCTCCTCCACCCCAGATAGTGGCAGGGAACCCAGACTaGCAACACGGGCCTTTTCCAGTGGTGGTGTGTGTT +
Preference number: 6 (lower is better)
Translates to: SPPPQIVAGNPD*QHGPFPVVVCV
Trigger: AACACACACCACCACTGGAAAAGGCCCGTGTTGCAAGTCTGGGTTCCCTGCCACTATCTGGGGTGGAGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp TCTTCAGACCTGACACAGCCTCTGTCCGGGGTCTGTTaGACAGTCCCCACAGCCTCCTCGGTTTGTACTGCA +
Preference number: 6 (lower is better)
Translates to: SSDLTQPLSGVC*TVPTASSVCTA
Trigger: TGCAGTACAAACCGAGGAGGCTGTGGGGACTGTCAAACAGACCCCGGACAGAGGCTGTGTCAGGTCTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CTTTGTCCTCTGGAGATGGAGGCTCTTCCTCAGAGCTaGAGGCCTCGCCTGCTGAATAGTGATGCCACTGGG +
Preference number: 6 (lower is better)
Translates to: LCPLEMEALPQS*RPRLLNSDATG
Trigger: CCCAGTGGCATCACTATTCAGCAGGCGAGGCCTCAAGCTCTGAGGAAGAGCCTCCATCTCCAGAGGACAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp CGCAGAGCGCAGGGAACTGGGGGCCACATCTTCATCTaGATGAAAACCCTGAAACTCCTCCTCCTCGGATTC +
Preference number: 6 (lower is better)
Translates to: RRAQGTGGHIFI*MKTLKLLLLGF
Trigger: GAATCCGAGGAGGAGGAGTTTCAGGGTTTTCATTCAGATGAAGATGTGGCCCCCAGTTCCCTGCGCTCTGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS TCA 72 bp GAGTCAGCATCCCCATACTTGAGACAGAGTGCACACTaGCGAGGGTCATCCAGGTGTGAGAAAGCAGCTGGG +
Preference number: 6 (lower is better)
Translates to: ESASPYLRQSAH*RGSSRCEKAAG
Trigger: CCCAGCTGCTTTCTCACACCTGGATGACCCTCGTCAGTGTGCACTCTGTCTCAAGTATGGGGATGCTGACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp GGTTTATCCAAGCAGTTGACACAAGAGCCACAGTCCTaGACACGCAAGCAACCCCGACAGTGCCCACAACGA +
Preference number: 6 (lower is better)
Translates to: GLSKQLTQEPQS*TRKQPRQCPQR
Trigger: TCGTTGTGGGCACTGTCGGGGTTGCTTGCGTGTGCAGGACTGTGGCTCTTGTGTCAACTGCTTGGATAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp TCTACTCGGACCCGGTGCACACCGTCAGGAGACTTCTaGTTTCCAGTCCAGCCATTGGGAAAAGAGGCAAAG +
Preference number: 6 (lower is better)
Translates to: STRTRCTPSGDF*FPVQPLGKEAK
Trigger: CTTTGCCTCTTTTCCCAATGGCTGGACTGGAAAGCAGAAGTCTCCTGACGGTGTGCACCGGGTCCGAGTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp AAGCACCGATTCATAGATCTTCAGGTGGGCTTCACTTaGGGTAAACTGAGGGGCCCGAAGGAGCAAGGGCCT +
Preference number: 6 (lower is better)
Translates to: KHRFIDLQVGFT*GKLRGPKEQGP
Trigger: AGGCCCTTGCTCCTTCGGGCCCCTCAGTTTACCCCAAGTGAAGCCCACCTGAAGATCTATGAATCGGTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CCA 72 bp CTGTGCTCCAATACAGGCGGGAGCATTGGTAGCCAATaGGGAAGAGTCGACCCTCACAGTCTGAGAGATCAG +
Preference number: 6 (lower is better)
Translates to: LCSNTGGSIGSQ*GRVDPHSLRDQ
Trigger: CTGATCTCTCAGACTGTGAGGGTCGACTCTTCCCCATTGGCTACCAATGCTCCCGCCTGTATTGGAGCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GACTCAAACAGTAGGTCTGAGGAACCATCGAGGGCCTaGGAAGGAGCTTCTGCAAGTGGCAGCAAAGGACAC +
Preference number: 6 (lower is better)
Translates to: DSNSRSEEPSRA*EGASASGSKGH
Trigger: GTGTCCTTTGCTGCCACTTGCAGAAGCTCCTTCCCAGGCCCTCGATGGTTCCTCAGACCTACTGTTTGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp TCAAAGCGCAGGTGTGGACCAACCCGTTTGGGGACCTaGTTTTCTTTGTCCTCTGGAGATGGAGGCTCTTCC +
Preference number: 6 (lower is better)
Translates to: SKRRCGPTRLGT*FSLSSGDGGSS
Trigger: GGAAGAGCCTCCATCTCCAGAGGACAAAGAAAACCAGGTCCCCAAACGGGTTGGTCCACACCTGCGCTTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CTTTGTCCTCTGGAGATGGAGGCTCTTCCTCAGAGCTaGAGGCCTCGCCTGAATAGTGATGCCACTGGGACT +
Preference number: 6 (lower is better)
Translates to: LCPLEMEALPQS*RPRLNSDATGT
Trigger: AGTCCCAGTGGCATCACTATTCAGGCGAGGCCTCAAGCTCTGAGGAAGAGCCTCCATCTCCAGAGGACAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006470.14
CDS CAA 72 bp GGAGAGATGCCTGAGCCGTGCATGCCCTCGTGCTTCTaGCACTTTCTCAATCAGAGTTCTCCATGCCACCTC +
Preference number: 6 (lower is better)
Translates to: GEMPEPCMPSCF*HFLNQSSPCHL
Trigger: GAGGTGGCATGGAGAACTCTGATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGGCTCAGGCATCTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GGCAGTAGTTCCCTTTTTCATAGAGCTCGGTGCACCTaGGGCAGAGGCTGTAATCTCCAGACCACTCGACAT +
Preference number: 6 (lower is better)
Translates to: GSSSLFHRARCT*GRGCNLQTTRH
Trigger: ATGTCGAGTGGTCTGGAGATTACAGCCTCTGCCCCAGGTGCACCGAGCTCTATGAAAAAGGGAACTACTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GGATCTCGTAGTCTTCATCTGAGAGTCCCTCACACTTaGCATGCACCCAGTGGTCACACTGTGCACACTGCA +
Preference number: 6 (lower is better)
Translates to: GSRSLHLRVPHT*HAPSGHTVHTA
Trigger: TGCAGTGTGCACAGTGTGACCACTGGGTGCATGCCAAGTGTGAGGGACTCTCAGATGAAGACTACGAGATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp CTGTTGTCTCCACTGAGCATAGACATGGTCCAAGGATaGAGGCAACACAGCATTGGGGAGCACTCCGTTTGG +
Preference number: 6 (lower is better)
Translates to: LLSPLSIDMVQG*RQHSIGEHSVW
Trigger: CCAAACGGAGTGCTCCCCAATGCTGTGTTGCCTCCATCCTTGGACCATGTCTATGCTCAGTGGAGACAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp TGGATGACACGAGAGAAGCAGTTGGGCTCACATGAGTaGTTGATGAATCGGGCAGCATTGCCGTGCATGGTG +
Preference number: 6 (lower is better)
Translates to: WMTREKQLGSHE*LMNRAALPCMV
Trigger: CACCATGCACGGCAATGCTGCCCGATTCATCAACCACTCATGTGAGCCCAACTGCTTCTCTCGTGTCATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp TTGGGAGGATCTTCATCCATAAATCGCCGGGGTGTCTaGATAACACGGGAGGAGCGAGCACTCACTACAGGC +
Preference number: 6 (lower is better)
Translates to: LGGSSSINRRGV*ITREERALTTG
Trigger: GCCTGTAGTGAGTGCTCGCTCCTCCCGTGTTATCAAGACACCCCGGCGATTTATGGATGAAGATCCTCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 90 bp TCCACTAAAGGAGAGATGCCTGAGCCGTGCATGCCCTCGTGCTTCTaGCACTTTCTCAATCAGAGTTCTCCATGCCACCTCCAAGCTCTC +
Preference number: 6 (lower is better)
Translates to: STKGEMPEPCMPSCF*HFLNQSSPCHLQAL
Trigger: GAGAGCTTGGAGGTGGCATGGAGAACTCTGATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGGCTCAGGCATCTCTCCTTTAGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp TCACATGAGTGGTTGATGAATCGGGCAGCATTGCCGTaGATGGTGGCGTCCACCACATCAAAGTCATCCATG +
Preference number: 6 (lower is better)
Translates to: SHEWLMNRAALP*MVASTTSKSSM
Trigger: CATGGATGACTTTGATGTGGTGGACGCCACCATGCACGGCAATGCTGCCCGATTCATCAACCACTCATGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GAAGCCATCATCACTGCTGATCTCAAAGCGCAGGTGTaGACCAACCCGTTTGGGGACCTGGTTTTCTTTGTC +
Preference number: 6 (lower is better)
Translates to: EAIITADLKAQV*TNPFGDLVFFV
Trigger: GACAAAGAAAACCAGGTCCCCAAACGGGTTGGTCCACACCTGCGCTTTGAGATCAGCAGTGATGATGGCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp GGAGGTCGAACAATAGAAGCCTCCACCTTTGGAGGTTaGGGAGGATCTTCATCCATAAATCGCCGGGGTGTC +
Preference number: 6 (lower is better)
Translates to: GGRTIEASTFGG*GGSSSINRRGV
Trigger: GACACCCCGGCGATTTATGGATGAAGATCCTCCCAAACCTCCAAAGGTGGAGGCTTCTATTGTTCGACCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 72 bp TTCTGGCCTTCCACATGGATGACACGAGAGAAGCAGTaGGGCTCACATGAGTGGTTGATGAATCGGGCAGCA +
Preference number: 6 (lower is better)
Translates to: FWPSTWMTREKQ*GSHEWLMNRAA
Trigger: TGCTGCCCGATTCATCAACCACTCATGTGAGCCCAACTGCTTCTCTCGTGTCATCCATGTGGAAGGCCAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CTCCAGGGATCAGAGAATCTGTATCTGAGGAAGGGGTaGGGCTATGCACAATGGTCTGGTTCTCCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: LQGSENLYLRKG*GYAQWSGSPLL
Trigger: CAGCAGAGGAGAACCAGACCATTGTGCATAGCCCAACCCCTTCCTCAGATACAGATTCTCTGATCCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108154.9
CDS CAA 90 bp ACAATGTGTTTCTGGCCTTCCACATGGATGACACGAGAGAAGCAGTaGGGCTCACATGAGTGGTTGATGAATCGGGCAGCATTGCCGTGC +
Preference number: 6 (lower is better)
Translates to: TMCFWPSTWMTREKQ*GSHEWLMNRAALPC
Trigger: GCACGGCAATGCTGCCCGATTCATCAACCACTCATGTGAGCCCAACTGCTTCTCTCGTGTCATCCATGTGGAAGGCCAGAAACACATTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 90 bp GTACAGGATCTCCAGGGATCAGAGAATCTGTATCTGAGGAAGGGGTaGGGCTATGCACAATGGTCTGGTTCTCCTCTGCTGCTTCTAGGT +
Preference number: 6 (lower is better)
Translates to: VQDLQGSENLYLRKG*GYAQWSGSPLLLLG
Trigger: ACCTAGAAGCAGCAGAGGAGAACCAGACCATTGTGCATAGCCCAACCCCTTCCTCAGATACAGATTCTCTGATCCCTGGAGATCCTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108154.9
CDS GCA 72 bp AAATTGGGCAGTAGTTCCCTTTTTCATAGAGCTCGGTaGACCTGGGGCAGAGGCTGTAATCTCCAGACCACT +
Preference number: 6 (lower is better)
Translates to: KLGSSSLFHRAR*TWGRGCNLQTT
Trigger: AGTGGTCTGGAGATTACAGCCTCTGCCCCAGGTGCACCGAGCTCTATGAAAAAGGGAACTACTGCCCAATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp GCACCCAGTGGTCACACTGTGCACACTGCATCATCTTaGTCTCATAGTCATTGTCTTCATAGCAGCGTGTGC +
Preference number: 6 (lower is better)
Translates to: APSGHTVHTASS*SHSHCLHSSVC
Trigger: GCACACGCTGCTATGAAGACAATGACTATGAGAGCAAGATGATGCAGTGTGCACAGTGTGACCACTGGGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp ACTAAAGGAGAGATGCCTGAGCCGTGCATGCCCTCGTaGTTCTTGCACTTTCTCAATCAGAGTTCTCCATGC +
Preference number: 6 (lower is better)
Translates to: TKGEMPEPCMPS*FLHFLNQSSPC
Trigger: GCATGGAGAACTCTGATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGGCTCAGGCATCTCTCCTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS GCA 72 bp TCCACTCATTCCACTAAAGGAGAGATGCCTGAGCCGTaGATGCCCTCGTGCTTCTTGCACTTTCTCAATCAG +
Preference number: 6 (lower is better)
Translates to: STHSTKGEMPEP*MPSCFLHFLNQ
Trigger: CTGATTGAGAAAGTGCAAGAAGCACGAGGGCATGCACGGCTCAGGCATCTCTCCTTTAGTGGAATGAGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp ATCTGCCTTCCACGTGCAACAGCAGCATGGACGTTCTaGAGGGAGCCATCATTCTCCTCAAACACTTCAGCT +
Preference number: 6 (lower is better)
Translates to: ICLPRATAAWTF*REPSFSSNTSA
Trigger: AGCTGAAGTGTTTGAGGAGAATGATGGCTCCCTCAAGAACGTCCATGCTGCTGTTGCACGTGGAAGGCAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp TCCCCTGCCATCTTCACAAATACTTGCCCCAGCTTGTaGACAAGGATGATCTTGGATGTGGCAGGTTTGGGG +
Preference number: 6 (lower is better)
Translates to: SPAIFTNTCPSL*TRMILDVAGLG
Trigger: CCCCAAACCTGCCACATCCAAGATCATCCTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGATGGCAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CCCTCCCCTGCCATCTTCACAAATACTTGCCCCAGCTaGTTGACAAGGATGATCTTGGATGTGGCAGGTTTG +
Preference number: 6 (lower is better)
Translates to: PSPAIFTNTCPS*LTRMILDVAGL
Trigger: CAAACCTGCCACATCCAAGATCATCCTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGATGGCAGGGGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp GTGTACAGGATCTCCAGGGATCAGAGAATCTGTATCTaGGGAAGGGGTTGGGCTATGCACAATGGTCTGGTT +
Preference number: 6 (lower is better)
Translates to: VYRISRDQRICI*GRGWAMHNGLV
Trigger: AACCAGACCATTGTGCATAGCCCAACCCCTTCCTCAGATACAGATTCTCTGATCCCTGGAGATCCTGTACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108154.9
CDS GCA 72 bp ATCAGAGAATCTGTATCTGAGGAAGGGGTTGGGCTATaGACAATGGTCTGGTTCTCCTCTGCTGCTTCTAGG +
Preference number: 6 (lower is better)
Translates to: IRESVSEEGVGL*TMVWFSSAASR
Trigger: CCTAGAAGCAGCAGAGGAGAACCAGACCATTGTGCATAGCCCAACCCCTTCCTCAGATACAGATTCTCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108154.9
CDS CCA 72 bp TGCAACAGGAGGTCGAACAATAGAAGCCTCCACCTTTaGAGGTTTGGGAGGATCTTCATCCATAAATCGCCG +
Preference number: 6 (lower is better)
Translates to: CNRRSNNRSLHL*RFGRIFIHKSP
Trigger: CGGCGATTTATGGATGAAGATCCTCCCAAACCTCCAAAGGTGGAGGCTTCTATTGTTCGACCTCCTGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 72 bp GTGTTGGGACCCCCAAATTTAGGTTTATCCAAGCAGTaGACACAAGAGCCACAGTCCTGCACACGCAAGCAA +
Preference number: 6 (lower is better)
Translates to: VLGPPNLGLSKQ*TQEPQSCTRKQ
Trigger: TTGCTTGCGTGTGCAGGACTGTGGCTCTTGTGTCAACTGCTTGGATAAACCTAAATTTGGGGGTCCCAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp TACAGGCTCACCCTCCCCTGCCATCTTCACAAATACTaGCCCCAGCTTGTTGACAAGGATGATCTTGGATGT +
Preference number: 6 (lower is better)
Translates to: YRLTLPCHLHKY*PQLVDKDDLGC
Trigger: ACATCCAAGATCATCCTTGTCAACAAGCTGGGGCAAGTATTTGTGAAGATGGCAGGGGAGGGTGAGCCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 90 bp GATTCTAGTTCCTGGGACAATTGTCCCATCTTCACTTTCTTGGCCTaGGAAACAAACTTGATCATAAGGGGAAGTCCGCCTCGGCCTCTG +
Preference number: 6 (lower is better)
Translates to: DSSSWDNCPIFTFLA*ETNLIIRGSPPRPL
Trigger: CAGAGGCCGAGGCGGACTTCCCCTTATGATCAAGTTTGTTTCCAAGGCCAAGAAAGTGAAGATGGGACAATTGTCCCAGGAACTAGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 90 bp TTTGGAGGTTTGGGAGGATCTTCATCCATAAATCGCCGGGGTGTCTaGATAACACGGGAGGAGCGAGCACTCACTACAGGCATAATAAAC +
Preference number: 6 (lower is better)
Translates to: FGGLGGSSSINRRGV*ITREERALTTGIIN
Trigger: GTTTATTATGCCTGTAGTGAGTGCTCGCTCCTCCCGTGTTATCAAGACACCCCGGCGATTTATGGATGAAGATCCTCCCAAACCTCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 90 bp GTTGCAACAGGAGGTCGAACAATAGAAGCCTCCACCTTTGGAGGTTaGGGAGGATCTTCATCCATAAATCGCCGGGGTGTCTTGATAACA +
Preference number: 6 (lower is better)
Translates to: VATGGRTIEASTFGG*GGSSSINRRGVLIT
Trigger: TGTTATCAAGACACCCCGGCGATTTATGGATGAAGATCCTCCCAAACCTCCAAAGGTGGAGGCTTCTATTGTTCGACCTCCTGTTGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS CAA 90 bp AGTCGACCCTCACAGTCTGAGAGATCAGATAGGGTGCCCAGGGAGTaGATTCTGATGGAGCCAATGAGTACATTGATGACATCTGGTTCA +
Preference number: 6 (lower is better)
Translates to: SRPSQSERSDRVPRE*ILMEPMSTLMTSGS
Trigger: TGAACCAGATGTCATCAATGTACTCATTGGCTCCATCAGAATCAACTCCCTGGGCACCCTATCTGATCTCTCAGACTGTGAGGGTCGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp ACGATCTCCTTGCCATCTAGGAGGTCTGTGTGTTTCTaGCAGAAAACCTTCTTGTCATCCTGGAAGATGCAG +
Preference number: 6 (lower is better)
Translates to: TISLPSRRSVCF*QKTFLSSWKMQ
Trigger: CTGCATCTTCCAGGATGACAAGAAGGTTTTCTGCCAGAAACACACAGACCTCCTAGATGGCAAGGAGATCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp CCAGAGTACTCAATGACCATCTCTCCCGCATCGATGTaGCGTTTACAAAACAGACCTCGTCCATGGATAGCT +
Preference number: 6 (lower is better)
Translates to: PEYSMTISPASM*RLQNRPRPWIA
Trigger: AGCTATCCATGGACGAGGTCTGTTTTGTAAACGCAACATCGATGCGGGAGAGATGGTCATTGAGTACTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS TCA 72 bp AGCGGCATTGAAGCCGCCACTTTCTGCTGTTGCTGTTaGTCGATCTTGAATAACTGCACCTTAGCTCTCTTA +
Preference number: 6 (lower is better)
Translates to: SGIEAATFCCCC*SILNNCTLALL
Trigger: TAAGAGAGCTAAGGTGCAGTTATTCAAGATCGATCAACAGCAACAGCAGAAAGTGGCGGCTTCAATGCCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp TCACAGTCTGAGAGATCAGATAGGGTGCCCAGGGAGTaGATTCTGATGGAGCCAATGAGTACATTGATGACA +
Preference number: 6 (lower is better)
Translates to: SQSERSDRVPRE*ILMEPMSTLMT
Trigger: TGTCATCAATGTACTCATTGGCTCCATCAGAATCAACTCCCTGGGCACCCTATCTGATCTCTCAGACTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp CTCATAGTCATTGTCTTCATAGCAGCGTGTGCAAATTaGGCAGTAGTTCCCTTTTTCATAGAGCTCGGTGCA +
Preference number: 6 (lower is better)
Translates to: LIVIVFIAACAN*AVVPFFIELGA
Trigger: TGCACCGAGCTCTATGAAAAAGGGAACTACTGCCCAATTTGCACACGCTGCTATGAAGACAATGACTATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp TCTCATAGTCATTGTCTTCATAGCAGCGTGTGCAAATaGGGCAGTAGTTCCCTTTTTCATAGAGCTCGGTGC +
Preference number: 6 (lower is better)
Translates to: SHSHCLHSSVCK*GSSSLFHRARC
Trigger: GCACCGAGCTCTATGAAAAAGGGAACTACTGCCCAATTTGCACACGCTGCTATGAAGACAATGACTATGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 90 bp ACAGGCATAATAAACTGCCGTATATTCTTTAAAAAGGTGGTACTTTaGGGGACCACAGTAGGACTGTCTTCCAAAGGGCTTCCTGTGGTG +
Preference number: 6 (lower is better)
Translates to: TGIINCRIFFKKVVL*GTTVGLSSKGLPVV
Trigger: CACCACAGGAAGCCCTTTGGAAGACAGTCCTACTGTGGTCCCCAAAAGTACCACCTTTTTAAAGAATATACGGCAGTTTATTATGCCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
CDS GCA 72 bp TCTTGCTCTCATAGTCATTGTCTTCATAGCAGCGTGTaGAAATTGGGCAGTAGTTCCCTTTTTCATAGAGCT +
Preference number: 6 (lower is better)
Translates to: SCSHSHCLHSSV*KLGSSSLFHRA
Trigger: AGCTCTATGAAAAAGGGAACTACTGCCCAATTTGCACACGCTGCTATGAAGACAATGACTATGAGAGCAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CCA 72 bp GATTCTGATGGAGCCAATGAGTACATTGATGACATCTaGTTCAAGTCCAGTCAAGAACTTTCGCTTGAAGTT +
Preference number: 6 (lower is better)
Translates to: DSDGANEYIDDI*FKSSQELSLEV
Trigger: AACTTCAAGCGAAAGTTCTTGACTGGACTTGAACCAGATGTCATCAATGTACTCATTGGCTCCATCAGAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9
ENSMUST00000131002.2
CDS CAA 72 bp ATAAACTGCCGTATATTCTTTAAAAAGGTGGTACTTTaGGGGACCACAGTAGGACTGTCTTCCAAAGGGCTT +
Preference number: 6 (lower is better)
Translates to: INCRIFFKKVVL*GTTVGLSSKGL
Trigger: AAGCCCTTTGGAAGACAGTCCTACTGTGGTCCCCAAAAGTACCACCTTTTTAAAGAATATACGGCAGTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006470.14
ENSMUST00000108154.9