Pregenerated sensors for KLRE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050241Ensembl transcript IDs: ENSMUST00000053708.9, ENSMUST00000203322.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CAA 90 bp | ATCAAAGGCATCGGGCAGTGGCATGAGGTGATAGGCTGGGCCAGGTaGATCCAGGGATTGCTTTCATCAGCAGAGCATTCCAATGATTCA | + |
Preference number: 2 (lower is better) Translates to: IKGIGQWHEVIGWAR*IQGLLSSAEHSNDS Trigger: TGAATCATTGGAATGCTCTGCTGATGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTATCACCTCATGCCACTGCCCGATGCCTTTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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3UTR-3UTR TCA 90 bp | CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCCATCGGGCAGTGGCATaGGGTGATAGGCTGGGCCAG | + |
Preference number: 2 (lower is better) Translates to: LLLANICQFVRTVFFHISHRAVA*GDRLGQ Trigger: CTGGCCCAGCCTATCACCTCATGCCACTGCCCGATG...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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3UTR-3UTR TCA 90 bp | CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCAATAACAGCTGCACCTaGACCAGACCCAGTTCTCTG | + |
Preference number: 2 (lower is better) Translates to: LLLANICQFVRTVFFHISNNSCT*TRPSSL Trigger: CAGAGAACTGGGTCTGGTTCAGGTGCAGCTGTTATT...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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3UTR CCA 72 bp | GATAAACCCAAGAGTGGGATCAAAGGCATCGGGCAGTaGCATGAGGTGATAGGCTGGGCCAGGTTGATCCAG | + |
Preference number: 3 (lower is better) Translates to: DKPKSGIKGIGQ*HEVIGWARLIQ Trigger: CTGGATCAACCTGGCCCAGCCTATCACCTCATGCCACTGCCCGATGCCTTTGATCCCACTCTTGGGTTTATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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3UTR-3UTR CAA 90 bp | GTAAAAGTGGTCATCACCATGGCTACAGCCATCAGGAGAAGGCACATGGCACCGATAGGCTGGGCCAGGTaGATCCAGGGATTGCTTTCA | + |
Preference number: 3 (lower is better) Translates to: VKVVITMATAIRRRHMAPIGWAR*IQGLLS Trigger: TGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTAT...CGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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3UTR CCA 72 bp | GAAATAACAGCTGCACCTGAACCAGACCCAGTTCTCTaGACAGGGATGATGGAGCCCTTCTTGCTGAATAGT | + |
Preference number: 3 (lower is better) Translates to: EITAAPEPDPVL*TGMMEPFLLNS Trigger: ACTATTCAGCAAGAAGGGCTCCATCATCCCTGTCCAGAGAACTGGGTCTGGTTCAGGTGCAGCTGTTATTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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3UTR TCA 72 bp | CTTATGAGACTGGAGTTAAGAGACAAGCAGGCACGCTaGCTGTCTCTCCAAATTAGCTCTTCCTTGGAGAAG | + |
Preference number: 3 (lower is better) Translates to: LMRLELRDKQAR*LSLQISSSLEK Trigger: CTTCTCCAAGGAAGAGCTAATTTGGAGAGACAGTCAGCGTGCCTGCTTGTCTCTTAACTCCAGTCTCATAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS-3UTR CCA 90 bp | GGTGATAGGCTGGGCCAGGTTGATCCAGGGATTGCTTTCATCAGCAGAGCATTCGCTTTACTCTTCTGCTaGGAATTCACATTTAGGGTA | + |
Preference number: 4 (lower is better) Translates to: GDRLGQVDPGIAFISRAFALLFC*EFTFRV Trigger: TACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGC...GAATGCTCTGCTGATGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTATCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS-3UTR GCA 90 bp | GGTGATAGGCTGGGCCAGGTTGATCCAGGGATTGCTTTCATCAGCAGAGCATTCTTTGCTTTACTCTTCTaGTGGGAATTCACATTTAGG | + |
Preference number: 4 (lower is better) Translates to: GDRLGQVDPGIAFISRAFFALLF*WEFTFR Trigger: CCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAA...GAATGCTCTGCTGATGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTATCACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS-3UTR GCA 90 bp | GTAAAAGTGGTCATCACCATGGCTACAGCCATCAGGAGAAGGCACATGGCACCGTCTGCTGTGTTTTTGTaGTTCTTAAGATGTTTCTGG | + |
Preference number: 4 (lower is better) Translates to: VKVVITMATAIRRRHMAPSAVFL*FLRCFW Trigger: CCAGAAACATCTTAAGAAGCACAAAAACACAGCAGA...CGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS-3UTR TCA 90 bp | CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCGCCAGCCTTTACCACTaGTGTCTTCTGCTGTGTTTT | + |
Preference number: 4 (lower is better) Translates to: LLLANICQFVRTVFFHISASLYH*CLLLCF Trigger: AAAACACAGCAGAAGACATCAGTGGTAAAGGCTGGC...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS-3UTR GCA 90 bp | TTGATCCAGGGATTGCTTTCATCAGCAGAGCATTCCAATGATTCACTTCTGATTACCACTGATGTCTTCTaGTGTGTTTTTGTGCTTCTT | + |
Preference number: 4 (lower is better) Translates to: LIQGLLSSAEHSNDSLLITTDVF*CVFVLL Trigger: AAGAAGCACAAAAACACAGCAGAAGACATCAGTGGT...AATCAGAAGTGAATCATTGGAATGCTCTGCTGATGAAAGCAATCCCTGGATCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS-3UTR GCA 90 bp | CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCCTTAATCTTGTTCTTTaGTTTACTCTTCTGCTGGGA | + |
Preference number: 4 (lower is better) Translates to: LLLANICQFVRTVFFHISLNLVL*FTLLLG Trigger: TCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAG...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS-3UTR CAA 90 bp | GTAAAAGTGGTCATCACCATGGCTACAGCCATCAGGAGAAGGCACATGGCACCGTCTTCTGCTGTGTTTTaGTGCTTCTTAAGATGTTTC | + |
Preference number: 5 (lower is better) Translates to: VKVVITMATAIRRRHMAPSSAVF*CFLRCF Trigger: GAAACATCTTAAGAAGCACAAAAACACAGCAGAAGA...CGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203322.2 |
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CDS CCA 90 bp | GAATTAAGTGTATTCTTAATCTTGTTCTTTGCTTTACTCTTCTGCTaGGAATTCACATTTAGGGTAGAACGGGTTACAGGTGCTTCATCC | + |
Preference number: 5 (lower is better) Translates to: ELSVFLILFFALLFC*EFTFRVERVTGASS Trigger: GGATGAAGCACCTGTAACCCGTTCTACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAGAATACACTTAATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053708.9 ENSMUST00000203322.2 |
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CDS GCA 90 bp | TTTGAATTAAGTGTATTCTTAATCTTGTTCTTTGCTTTACTCTTCTaGTGGGAATTCACATTTAGGGTAGAACGGGTTACAGGTGCTTCA | + |
Preference number: 5 (lower is better) Translates to: FELSVFLILFFALLF*WEFTFRVERVTGAS Trigger: TGAAGCACCTGTAACCCGTTCTACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAGAATACACTTAATTCAAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053708.9 ENSMUST00000203322.2 |
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CDS TCA 72 bp | GGCACCGAGCACACTCGAGAGAAGCCTCCATGGAGGTaGGCAATTCCCTTTACCACTGATGTCTTCTGCTGT | + |
Preference number: 6 (lower is better) Translates to: GTEHTREKPPWR*AIPFTTDVFCC Trigger: ACAGCAGAAGACATCAGTGGTAAAGGGAATTGCTCACCTCCATGGAGGCTTCTCTCGAGTGTGCTCGGTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053708.9 |
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CDS CCA 72 bp | TCAAGTTTAGAAAACAGCCCAGAGGGTAGAACCGAATaGTCTTCCCACAGCCACTGTCTGCGAGTTTCATTA | + |
Preference number: 6 (lower is better) Translates to: SSLENSPEGRTE*SSHSHCLRVSL Trigger: TAATGAAACTCGCAGACAGTGGCTGTGGGAAGACCATTCGGTTCTACCCTCTGGGCTGTTTTCTAAACTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053708.9 |