RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for KLRE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050241

Ensembl transcript IDs: ENSMUST00000053708.9, ENSMUST00000203322.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp ATCAAAGGCATCGGGCAGTGGCATGAGGTGATAGGCTGGGCCAGGTaGATCCAGGGATTGCTTTCATCAGCAGAGCATTCCAATGATTCA +
Preference number: 2 (lower is better)
Translates to: IKGIGQWHEVIGWAR*IQGLLSSAEHSNDS
Trigger: TGAATCATTGGAATGCTCTGCTGATGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTATCACCTCATGCCACTGCCCGATGCCTTTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
3UTR-3UTR TCA 90 bp CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCCATCGGGCAGTGGCATaGGGTGATAGGCTGGGCCAG +
Preference number: 2 (lower is better)
Translates to: LLLANICQFVRTVFFHISHRAVA*GDRLGQ
Trigger: CTGGCCCAGCCTATCACCTCATGCCACTGCCCGATG...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
3UTR-3UTR TCA 90 bp CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCAATAACAGCTGCACCTaGACCAGACCCAGTTCTCTG +
Preference number: 2 (lower is better)
Translates to: LLLANICQFVRTVFFHISNNSCT*TRPSSL
Trigger: CAGAGAACTGGGTCTGGTTCAGGTGCAGCTGTTATT...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
3UTR CCA 72 bp GATAAACCCAAGAGTGGGATCAAAGGCATCGGGCAGTaGCATGAGGTGATAGGCTGGGCCAGGTTGATCCAG +
Preference number: 3 (lower is better)
Translates to: DKPKSGIKGIGQ*HEVIGWARLIQ
Trigger: CTGGATCAACCTGGCCCAGCCTATCACCTCATGCCACTGCCCGATGCCTTTGATCCCACTCTTGGGTTTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
3UTR-3UTR CAA 90 bp GTAAAAGTGGTCATCACCATGGCTACAGCCATCAGGAGAAGGCACATGGCACCGATAGGCTGGGCCAGGTaGATCCAGGGATTGCTTTCA +
Preference number: 3 (lower is better)
Translates to: VKVVITMATAIRRRHMAPIGWAR*IQGLLS
Trigger: TGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTAT...CGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
3UTR CCA 72 bp GAAATAACAGCTGCACCTGAACCAGACCCAGTTCTCTaGACAGGGATGATGGAGCCCTTCTTGCTGAATAGT +
Preference number: 3 (lower is better)
Translates to: EITAAPEPDPVL*TGMMEPFLLNS
Trigger: ACTATTCAGCAAGAAGGGCTCCATCATCCCTGTCCAGAGAACTGGGTCTGGTTCAGGTGCAGCTGTTATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
3UTR TCA 72 bp CTTATGAGACTGGAGTTAAGAGACAAGCAGGCACGCTaGCTGTCTCTCCAAATTAGCTCTTCCTTGGAGAAG +
Preference number: 3 (lower is better)
Translates to: LMRLELRDKQAR*LSLQISSSLEK
Trigger: CTTCTCCAAGGAAGAGCTAATTTGGAGAGACAGTCAGCGTGCCTGCTTGTCTCTTAACTCCAGTCTCATAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS-3UTR CCA 90 bp GGTGATAGGCTGGGCCAGGTTGATCCAGGGATTGCTTTCATCAGCAGAGCATTCGCTTTACTCTTCTGCTaGGAATTCACATTTAGGGTA +
Preference number: 4 (lower is better)
Translates to: GDRLGQVDPGIAFISRAFALLFC*EFTFRV
Trigger: TACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGC...GAATGCTCTGCTGATGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTATCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS-3UTR GCA 90 bp GGTGATAGGCTGGGCCAGGTTGATCCAGGGATTGCTTTCATCAGCAGAGCATTCTTTGCTTTACTCTTCTaGTGGGAATTCACATTTAGG +
Preference number: 4 (lower is better)
Translates to: GDRLGQVDPGIAFISRAFFALLF*WEFTFR
Trigger: CCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAA...GAATGCTCTGCTGATGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTATCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS-3UTR GCA 90 bp GTAAAAGTGGTCATCACCATGGCTACAGCCATCAGGAGAAGGCACATGGCACCGTCTGCTGTGTTTTTGTaGTTCTTAAGATGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: VKVVITMATAIRRRHMAPSAVFL*FLRCFW
Trigger: CCAGAAACATCTTAAGAAGCACAAAAACACAGCAGA...CGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS-3UTR TCA 90 bp CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCGCCAGCCTTTACCACTaGTGTCTTCTGCTGTGTTTT +
Preference number: 4 (lower is better)
Translates to: LLLANICQFVRTVFFHISASLYH*CLLLCF
Trigger: AAAACACAGCAGAAGACATCAGTGGTAAAGGCTGGC...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS-3UTR GCA 90 bp TTGATCCAGGGATTGCTTTCATCAGCAGAGCATTCCAATGATTCACTTCTGATTACCACTGATGTCTTCTaGTGTGTTTTTGTGCTTCTT +
Preference number: 4 (lower is better)
Translates to: LIQGLLSSAEHSNDSLLITTDVF*CVFVLL
Trigger: AAGAAGCACAAAAACACAGCAGAAGACATCAGTGGT...AATCAGAAGTGAATCATTGGAATGCTCTGCTGATGAAAGCAATCCCTGGATCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS-3UTR GCA 90 bp CTACTTCTTGCAAATATATGTCAGTTTGTTCGCACAGTTTTCTTCCATATAAGCCTTAATCTTGTTCTTTaGTTTACTCTTCTGCTGGGA +
Preference number: 4 (lower is better)
Translates to: LLLANICQFVRTVFFHISLNLVL*FTLLLG
Trigger: TCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAG...GCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS-3UTR CAA 90 bp GTAAAAGTGGTCATCACCATGGCTACAGCCATCAGGAGAAGGCACATGGCACCGTCTTCTGCTGTGTTTTaGTGCTTCTTAAGATGTTTC +
Preference number: 5 (lower is better)
Translates to: VKVVITMATAIRRRHMAPSSAVF*CFLRCF
Trigger: GAAACATCTTAAGAAGCACAAAAACACAGCAGAAGA...CGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000203322.2
CDS CCA 90 bp GAATTAAGTGTATTCTTAATCTTGTTCTTTGCTTTACTCTTCTGCTaGGAATTCACATTTAGGGTAGAACGGGTTACAGGTGCTTCATCC +
Preference number: 5 (lower is better)
Translates to: ELSVFLILFFALLFC*EFTFRVERVTGASS
Trigger: GGATGAAGCACCTGTAACCCGTTCTACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAGAATACACTTAATTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053708.9
ENSMUST00000203322.2
CDS GCA 90 bp TTTGAATTAAGTGTATTCTTAATCTTGTTCTTTGCTTTACTCTTCTaGTGGGAATTCACATTTAGGGTAGAACGGGTTACAGGTGCTTCA +
Preference number: 5 (lower is better)
Translates to: FELSVFLILFFALLF*WEFTFRVERVTGAS
Trigger: TGAAGCACCTGTAACCCGTTCTACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAGAATACACTTAATTCAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053708.9
ENSMUST00000203322.2
CDS TCA 72 bp GGCACCGAGCACACTCGAGAGAAGCCTCCATGGAGGTaGGCAATTCCCTTTACCACTGATGTCTTCTGCTGT +
Preference number: 6 (lower is better)
Translates to: GTEHTREKPPWR*AIPFTTDVFCC
Trigger: ACAGCAGAAGACATCAGTGGTAAAGGGAATTGCTCACCTCCATGGAGGCTTCTCTCGAGTGTGCTCGGTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053708.9
CDS CCA 72 bp TCAAGTTTAGAAAACAGCCCAGAGGGTAGAACCGAATaGTCTTCCCACAGCCACTGTCTGCGAGTTTCATTA +
Preference number: 6 (lower is better)
Translates to: SSLENSPEGRTE*SSHSHCLRVSL
Trigger: TAATGAAACTCGCAGACAGTGGCTGTGGGAAGACCATTCGGTTCTACCCTCTGGGCTGTTTTCTAAACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053708.9