Pregenerated sensors for KLRD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030165Ensembl transcript IDs: ENSMUST00000032268.14, ENSMUST00000112063.9, ENSMUST00000119520.8, ENSMUST00000159804.2, ENSMUST00000203965.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTGATAACTGAGAATTCTGGAAATAAATCTTTTGAGGGAACTGTGCCATCCTCCTCTACAGACACAAGATaGAAAGGTAGTAATATTGAG | + |
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Preference number: 2 (lower is better) Translates to: LITENSGNKSFEGTVPSSSTDTR*KGSNIE Trigger: CTCAATATTACTACCTTTCCATCTTGTGTCTGTAGA...GGAGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAGAATTCTCAGTTATCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159804.2 |
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| 3UTR-3UTR CCA 90 bp | AAAACCTCTCTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCTCTACAGACACAAGATaGAAAGGTAGTAATATTGAG | + |
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Preference number: 2 (lower is better) Translates to: KTSLFLLHLNFMHTCEEASTDTR*KGSNIE Trigger: CTCAATATTACTACCTTTCCATCTTGTGTCTGTAGA...GGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAGAGAGGTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| 3UTR-3UTR TCA 90 bp | ACCAAACAAAAACATTCTACAGACACAAGATGGAAAGGTAGTAATATTGAGAGCTATTTTTGCTTCATCTaGACTTTATGCACACGTGTG | + |
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Preference number: 2 (lower is better) Translates to: TKQKHSTDTRWKGSNIESYFCFI*TLCTRV Trigger: CACACGTGTGCATAAAGTTCAGATGAAGCAAAAATA...GCTCTCAATATTACTACCTTTCCATCTTGTGTCTGTAGAATGTTTTTGTTTGGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| 3UTR-3UTR CCA 90 bp | CTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCATCAAGTATTCTACAGACACAAGATaGAAAGGTAGTAATATTGAG | + |
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Preference number: 2 (lower is better) Translates to: LFLLHLNFMHTCEEAIKYSTDTR*KGSNIE Trigger: CTCAATATTACTACCTTTCCATCTTGTGTCTGTAGA...ATACTTGATGGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| 3UTR-3UTR CAA 90 bp | CAGTGCTCTGGCCTGATAACTGAGAATTCTGGAAATAAATCTTTTGAGGGAACTAACCGTGGACCTTCCTaGTCTATACCCTTTGCCTTA | + |
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Preference number: 3 (lower is better) Translates to: QCSGLITENSGNKSFEGTNRGPS*SIPFAL Trigger: TAAGGCAAAGGGTATAGACAAGGAAGGTCCACGGTT...AGTTCCCTCAAAAGATTTATTTCCAGAATTCTCAGTTATCAGGCCAGAGCACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159804.2 |
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| 3UTR-3UTR CAA 90 bp | AATTCTGGAAATAAATCTTTTGAGGGAACTGTGCCATCCTCCCATAGCCAGGCACTGGAAATAAATCTTTaGAGGGAACTGTGCCATCCT | + |
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Preference number: 3 (lower is better) Translates to: NSGNKSFEGTVPSSHSQALEINL*RELCHP Trigger: AGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAG...TGCCTGGCTATGGGAGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159804.2 ENSMUST00000203965.2 |
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| 3UTR-3UTR CAA 90 bp | AAAACCTCTCTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCAACCGTGGACCTTCCTaGTCTATACCCTTTGCCTTA | + |
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Preference number: 3 (lower is better) Translates to: KTSLFLLHLNFMHTCEEANRGPS*SIPFAL Trigger: TAAGGCAAAGGGTATAGACAAGGAAGGTCCACGGTT...GGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAGAGAGGTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| 3UTR-3UTR CAA 90 bp | CTGATAACTGAGAATTCTGGAAATAAATCTTTTGAGGGAACTGTGCCATCCTCCCAGAAACGCTTTTGCTaGGACTGTAAACAATGCAGT | + |
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Preference number: 3 (lower is better) Translates to: LITENSGNKSFEGTVPSSQKRFC*DCKQCS Trigger: ACTGCATTGTTTACAGTCCAAGCAAAAGCGTTTCTG...GGAGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAGAATTCTCAGTTATCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159804.2 ENSMUST00000203965.2 |
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| 3UTR-3UTR CAA 90 bp | TTTATGCACACGTGTGAAGAAGCCATCAAGTATAAATTACTTGGGTACAAATGTAACCGTGGACCTTCCTaGTCTATACCCTTTGCCTTA | + |
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Preference number: 3 (lower is better) Translates to: FMHTCEEAIKYKLLGYKCNRGPS*SIPFAL Trigger: TAAGGCAAAGGGTATAGACAAGGAAGGTCCACGGTT...ACATTTGTACCCAAGTAATTTATACTTGATGGCTTCTTCACACGTGTGCATAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| 3UTR-3UTR CAA 90 bp | TTTATTTTCACAGGATTCAGCAGAAACGCTTTTGCTTGGACTGTAAACAATGCACTGGAAATAAATCTTTaGAGGGAACTGTGCCATCCT | + |
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Preference number: 3 (lower is better) Translates to: FIFTGFSRNAFAWTVNNALEINL*RELCHP Trigger: AGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAG...TGCATTGTTTACAGTCCAAGCAAAAGCGTTTCTGCTGAATCCTGTGAAAATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159804.2 ENSMUST00000203965.2 |
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| CDS-3UTR TCA 90 bp | AGAATTCTGGAAATAAATCTTTTGAGGGAACTGTGCCATCCTCCCATAGCCAGGGGTTGGAGAAGGTGTTaGTTGAATGTTCTGTATAGT | + |
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Preference number: 4 (lower is better) Translates to: RILEINLLRELCHPPIARGWRRC*LNVLYS Trigger: ACTATACAGAACATTCAATCAACACCTTCTCCAACC...CCTGGCTATGGGAGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAGAATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159804.2 |
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| CDS-3UTR TCA 90 bp | CTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCATCAAGTATTTTCTGGATTGGGGCTaGAGAAGGCTGGAATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LFLLHLNFMHTCEEAIKYFLDWG*RRLEFC Trigger: GCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAA...ATACTTGATGGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR TCA 90 bp | TTTATTTTCACAGGATTCAGCAGAAACGCTTTTGCTTGGACTGTAAACAATGCATTTCTGGATTGGGGCTaGAGAAGGCTGGAATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: FIFTGFSRNAFAWTVNNAFLDWG*RRLEFC Trigger: GCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAA...TGCATTGTTTACAGTCCAAGCAAAAGCGTTTCTGCTGAATCCTGTGAAAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000203965.2 |
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| CDS-3UTR TCA 90 bp | AGAATTCTGGAAATAAATCTTTTGAGGGAACTGTGCCATCCTCCCATAGCCAGGATTTTATTCCAAAGATaGCAGACATCAGTCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: RILEINLLRELCHPPIARILFQR*QTSVST Trigger: GGTGGAGACTGATGTCTGTCATCTTTGGAATAAAAT...CCTGGCTATGGGAGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAGAATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159804.2 |
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| CDS-3UTR CCA 90 bp | GGCCTGATAACTGAGAATTCTGGAAATAAATCTTTTGAGGGAACTGTGCCATCCGGAATTCTACAGTGGTaGTTGGAGAAGGTGTTGATT | + |
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Preference number: 4 (lower is better) Translates to: GLITENSGNKSFEGTVPSGILQW*LEKVLI Trigger: AATCAACACCTTCTCCAACCACCACTGTAGAATTCC...GGATGGCACAGTTCCCTCAAAAGATTTATTTCCAGAATTCTCAGTTATCAGGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159804.2 |
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| CDS-3UTR CCA 90 bp | CTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCATCAAGTATCCTGGAATTCTACAGTaGTGGTTGGAGAAGGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: LFLLHLNFMHTCEEAIKYPGILQ*WLEKVL Trigger: CAACACCTTCTCCAACCACCACTGTAGAATTCCAGG...ATACTTGATGGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR CCA 90 bp | AAAACCTCTCTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCGGAATTCTACAGTGGTaGTTGGAGAAGGTGTTGATT | + |
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Preference number: 4 (lower is better) Translates to: KTSLFLLHLNFMHTCEEAGILQW*LEKVLI Trigger: AATCAACACCTTCTCCAACCACCACTGTAGAATTCC...GGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAGAGAGGTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR CCA 90 bp | TTTATGCACACGTGTGAAGAAGCCATCAAGTATAAATTACTTGGGTACAAATGTCCTGGAATTCTACAGTaGTGGTTGGAGAAGGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: FMHTCEEAIKYKLLGYKCPGILQ*WLEKVL Trigger: CAACACCTTCTCCAACCACCACTGTAGAATTCCAGG...ACATTTGTACCCAAGTAATTTATACTTGATGGCTTCTTCACACGTGTGCATAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR TCA 90 bp | CTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCATCAAGTATGGTTGGAGAAGGTGTTaGTTGAATGTTCTGTATAGT | + |
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Preference number: 4 (lower is better) Translates to: LFLLHLNFMHTCEEAIKYGWRRC*LNVLYS Trigger: ACTATACAGAACATTCAATCAACACCTTCTCCAACC...ATACTTGATGGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR GCA 90 bp | CTGATAACTGAGAATTCTGGAAATAAATCTTTTGAGGGAACTGTGCCATCCTCCAAGCACAGAAATCTCTaGTTCTTTTCCAAGACTTTT | + |
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Preference number: 4 (lower is better) Translates to: LITENSGNKSFEGTVPSSKHRNL*FFSKTF Trigger: AAAAGTCTTGGAAAAGAAGCAGAGATTTCTGTGCTT...GGAGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAGAATTCTCAGTTATCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203965.2 |
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| CDS-3UTR CCA 90 bp | TTTATGCACACGTGTGAAGAAGCCATCAAGTATAAATTACTTGGGTACAAATGTGGAATTCTACAGTGGTaGTTGGAGAAGGTGTTGATT | + |
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Preference number: 4 (lower is better) Translates to: FMHTCEEAIKYKLLGYKCGILQW*LEKVLI Trigger: AATCAACACCTTCTCCAACCACCACTGTAGAATTCC...ACATTTGTACCCAAGTAATTTATACTTGATGGCTTCTTCACACGTGTGCATAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR TCA 90 bp | ACCAAACAAAAACATTCTACAGACACAAGATGGAAAGGTAGTAATATTGAGAGCGGTTGGAGAAGGTGTTaGTTGAATGTTCTGTATAGT | + |
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Preference number: 4 (lower is better) Translates to: TKQKHSTDTRWKGSNIESGWRRC*LNVLYS Trigger: ACTATACAGAACATTCAATCAACACCTTCTCCAACC...GCTCTCAATATTACTACCTTTCCATCTTGTGTCTGTAGAATGTTTTTGTTTGGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 ENSMUST00000159804.2 |
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| CDS-3UTR TCA 90 bp | TTTATGCACACGTGTGAAGAAGCCATCAAGTATAAATTACTTGGGTACAAATGTATTTTATTCCAAAGATaGCAGACATCAGTCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: FMHTCEEAIKYKLLGYKCILFQR*QTSVST Trigger: GGTGGAGACTGATGTCTGTCATCTTTGGAATAAAAT...ACATTTGTACCCAAGTAATTTATACTTGATGGCTTCTTCACACGTGTGCATAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR TCA 90 bp | ACCAAACAAAAACATTCTACAGACACAAGATGGAAAGGTAGTAATATTGAGAGCATTTTATTCCAAAGATaGCAGACATCAGTCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: TKQKHSTDTRWKGSNIESILFQR*QTSVST Trigger: GGTGGAGACTGATGTCTGTCATCTTTGGAATAAAAT...GCTCTCAATATTACTACCTTTCCATCTTGTGTCTGTAGAATGTTTTTGTTTGGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 ENSMUST00000159804.2 |
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| CDS-3UTR GCA 90 bp | AAAACCTCTCTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCAAGCACAGAAATCTCTaGTTCTTTTCCAAGACTTTT | + |
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Preference number: 4 (lower is better) Translates to: KTSLFLLHLNFMHTCEEAKHRNL*FFSKTF Trigger: AAAAGTCTTGGAAAAGAAGCAGAGATTTCTGTGCTT...GGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAGAGAGGTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS TCA 90 bp | CAGCATCTTGTAACCTCTCCAACCAATTCATTTCTGGATTGGGGCTaGAGAAGGCTGGAATTCTGCGAAGCACAGAAATCTCTGCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: QHLVTSPTNSFLDWG*RRLEFCEAQKSLLL Trigger: AAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTGGTTGGAGAGGTTACAAGATGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203965.2 |
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| CDS-3UTR CAA 90 bp | AAAACCTCTCTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCCAGAAACGCTTTTGCTaGGACTGTAAACAATGCAGT | + |
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Preference number: 5 (lower is better) Translates to: KTSLFLLHLNFMHTCEEAQKRFC*DCKQCS Trigger: ACTGCATTGTTTACAGTCCAAGCAAAAGCGTTTCTG...GGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAGAGAGGTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR CAA 90 bp | CTATTTTTGCTTCATCTGAACTTTATGCACACGTGTGAAGAAGCCATCAAGTATATTCTACAGTGGTGGTaGGAGAAGGTGTTGATTGAA | + |
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Preference number: 5 (lower is better) Translates to: LFLLHLNFMHTCEEAIKYILQWW*EKVLIE Trigger: TTCAATCAACACCTTCTCCAACCACCACTGTAGAAT...ATACTTGATGGCTTCTTCACACGTGTGCATAAAGTTCAGATGAAGCAAAAATAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS-3UTR CAA 90 bp | TGGACCTTCCTTGTCTATACCCTTTGCCTTAAGAAACATTTAAATAGGCAGTTTATTCTACAGTGGTGGTaGGAGAAGGTGTTGATTGAA | + |
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Preference number: 5 (lower is better) Translates to: WTFLVYTLCLKKHLNRQFILQWW*EKVLIE Trigger: TTCAATCAACACCTTCTCCAACCACCACTGTAGAAT...AAACTGCCTATTTAAATGTTTCTTAAGGCAAAGGGTATAGACAAGGAAGGTCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159804.2 |
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| CDS-3UTR CAA 90 bp | ACCAAACAAAAACATTCTACAGACACAAGATGGAAAGGTAGTAATATTGAGAGCATTCTACAGTGGTGGTaGGAGAAGGTGTTGATTGAA | + |
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Preference number: 5 (lower is better) Translates to: TKQKHSTDTRWKGSNIESILQWW*EKVLIE Trigger: TTCAATCAACACCTTCTCCAACCACCACTGTAGAAT...GCTCTCAATATTACTACCTTTCCATCTTGTGTCTGTAGAATGTTTTTGTTTGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 ENSMUST00000159804.2 |
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| CDS-3UTR CAA 90 bp | ACCAAACAAAAACATTCTACAGACACAAGATGGAAAGGTAGTAATATTGAGAGCCTGGAAATAAATCTTTaGAGGGAACTGTGCCATCCT | + |
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Preference number: 5 (lower is better) Translates to: TKQKHSTDTRWKGSNIESLEINL*RELCHP Trigger: AGGATGGCACAGTTCCCTCAAAAGATTTATTTCCAG...GCTCTCAATATTACTACCTTTCCATCTTGTGTCTGTAGAATGTTTTTGTTTGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112063.9 ENSMUST00000119520.8 |
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| CDS TCA 72 bp | GTAACCTCTCCAACCAATTCATTTCTGGATTGGGGCTaGAGAAGGCTGGAATTCTGCGAAGCACAGAAATCT | + |
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Preference number: 6 (lower is better) Translates to: VTSPTNSFLDWG*RRLEFCEAQKS Trigger: AGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTGGTTGGAGAGGTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203965.2 |
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| CDS CCA 72 bp | CAACCAATTCATTTCTGGATTGGGGCTGAAGAAGGCTaGAATTCTGCGAAGCACAGAAATCTCTGCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: QPIHFWIGAEEG*NSAKHRNLCFF Trigger: AAAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203965.2 |
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| CDS CCA 72 bp | AACTCAATTCATTTCTGGATTGGGGCTGAAGAAGGCTaGAATTCTGCGAAGCACAGAAATCTCTGCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: NSIHFWIGAEEG*NSAKHRNLCFF Trigger: AAAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032268.14 ENSMUST00000112063.9 |
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| CDS CCA 72 bp | TTGTCAATTCATTTCTGGATTGGGGCTGAAGAAGGCTaGAATTCTGCGAAGCACAGAAATCTCTGCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LSIHFWIGAEEG*NSAKHRNLCFF Trigger: AAAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTGACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119520.8 |
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| CDS TCA 72 bp | AAGTTCATAAAACTCAATTCATTTCTGGATTGGGGCTaGAGAAGGCTGGAATTCTGCGAAGCACAGAAATCT | + |
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Preference number: 6 (lower is better) Translates to: KFIKLNSFLDWG*RRLEFCEAQKS Trigger: AGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTGAGTTTTATGAACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032268.14 ENSMUST00000112063.9 |
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| CDS CCA 72 bp | ACTGAAGTTCATAAAACTCTTCCTGGAATTCTACAGTaGTGGTTGGAGAAGGTGTTGATTGAATGTTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: TEVHKTLPGILQ*WLEKVLIECSV Trigger: TACAGAACATTCAATCAACACCTTCTCCAACCACCACTGTAGAATTCCAGGAAGAGTTTTATGAACTTCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159804.2 |
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